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Platform GPL4125 Query DataSets for GPL4125
Status Public on Aug 17, 2006
Title Agilent-014707 Human Promoter ChIP-on-Chip Set 244K, Microarray 2 of 2 G4489A (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4489A
 
Description
Human Promoter ChIP-on-Chip Set 244K 2 of 2

Arrays of this design have barcodes that begin with 16014707 or 2514707.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Aug 17, 2006
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (130) GSM180123, GSM180314, GSM180316, GSM180319, GSM180321, GSM180323 
Series (25)
GSE7449 Genome-wide analysis reveals determinants of redundant and specific binding within a transcription factor family
GSE9367 IRF4 ChIP-on-chip for Myeloma Cell Lines
GSE11173 Defining a Chromatin Pattern That Characterizes DNA Hypermethylated Genes in Colon Cancer Cells
Relations
Alternative to GPL8170

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GB_RANGE NCBI Build 35.1 Accession.Version[start..end]

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GB_RANGE
1 267 912 HsCGHBrightCorner pos
2 267 910 DarkCorner pos
3 267 908 DarkCorner pos
4 267 906 A_17_P10337025 FALSE NM_024819 DCAKD ref|NM_024819|ref|DCAKD:25846|mgc|BC018132:-170|mgc|BC006472:25846|ens|ENST00000310604:16489 chr17:040468041-040468092 INSIDE NC_000017.9[040468041..040468092]
5 267 904 A_17_P17399900 FALSE NM_019556 MOSPD1 ref|NM_019556|ref|MOSPD1:499|mgc|BC005700:479 chrX:133774296-133774340 INSIDE NC_000023.8[133774296..133774340]
6 267 902 A_17_P07475610 FALSE NM_005871 SMNDC1 ref|NM_005871|ref|SMNDC1:-1771|mgc|BC011234:-1771 chr10:112056429-112056488 PROMOTER NC_000010.8[112056429..112056488]
7 267 900 A_17_P11858519 FALSE NM_000533 PLP1 ref|NM_000533|ref|PLP1:-5189|ref|NM_199478:-5189 chrX:102832687-102832731 PROMOTER NC_000023.8[102832687..102832731]
8 267 898 A_17_P10084768 FALSE NM_000196 HSD11B2 ref|NM_000196|ref|HSD11B2:778|mgc|BC036780:778 chr16:066023292-066023336 INSIDE NC_000016.8[066023292..066023336]
9 267 896 A_17_P09636118 FALSE NM_024966 SEMA6D ref|NM_024966|ref|SEMA6D:2223|ref|NM_020858:2223 chr15:045800171-045800230 INSIDE NC_000015.8[045800171..045800230]
10 267 894 A_17_P11850388 FALSE NM_013955 NOX1 ref|NM_013955|ref|NOX1:1066|ref|NM_013954:1066|ens|ENST00000330752:15412 chrX:099934248-099934307 INSIDE NC_000023.8[099934248..099934307]
11 267 892 A_17_P16464213 FALSE NM_024036 LRFN4 ref|NM_024036|ref|LRFN4:-382|ref|NM_022172:50832|ref|NM_000920:97290|mgc|BC015581:-382|mgc|BC011617:101246 chr11:066381144-066381188 PROMOTER NC_000011.8[066381144..066381188]
12 267 890 A_17_P10321492 FALSE NM_032524 KRTAP4-4 ref|NM_032524|ref|KRTAP4-4:921|ens|ENST00000333822:881 chr17:036569559-036569618 INSIDE NC_000017.9[036569559..036569618]
13 267 888 A_17_P09532883 FALSE NM_001014432 AKT1 ref|NM_001014432|ref|AKT1:-4177|ref|NM_005163:-6319|ref|NM_001014431:-4177|ens|ENST00000313847:-1271|ens|ENST00000342537:650209 chr14:104337280-104337324 PROMOTER NC_000014.7[104337280..104337324]
14 267 886 A_17_P08399652 FALSE NM_175895 FLJ25590 ref|NM_175895|ref|FLJ25590:914|ens|ENST00000325077:818 chr12:061282545-061282589 INSIDE NC_000012.9[061282545..061282589]
15 267 884 A_17_P17177047 FALSE NM_021220 OVOL2 ref|NM_021220|ref|OVOL2:716|mgc|BC006148:721|ens|ENST00000278780:1888 chr20:017985783-017985827 INSIDE NC_000020.9[017985783..017985827]
16 267 882 A_17_P08274599 FALSE NM_183378 OVCH1 ref|NM_183378|ref|OVCH1:1286|ens|ENST00000318184:1286 chr12:029540571-029540630 INSIDE NC_000012.9[029540571..029540630]
17 267 880 A_17_P11857768 FALSE ens|ENST00000255506:-1951 chrX:102635323-102635382 Unknown NC_000023.8[102635323..102635382]
18 267 878 A_17_P10213318 FALSE NM_020795 NLGN2 ref|NM_020795|ref|NLGN2:1308|ens|ENST00000302926:1308 chr17:007253509-007253557 INSIDE NC_000017.9[007253509..007253557]
19 267 876 A_17_P11916232 FALSE NM_006978 RNF113A ref|NM_006978|ref|RNF113A:-4514|ref|NM_004541:4571 chrX:118792157-118792216 PROMOTER NC_000023.8[118792157..118792216]
20 267 874 A_17_P07269055 FALSE NM_199452 ZNF365 ref|NM_199452|ref|ZNF365:118280|ref|NM_199451:264536|mgc|BC101083:-5046 chr10:064068463-064068522 INSIDE NC_000010.8[064068463..064068522]

Total number of rows: 243504

Table truncated, full table size 43210 Kbytes.






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Supplementary data files not provided

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