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Platform GPL4580 Query DataSets for GPL4580
Status Public on Nov 28, 2006
Title Pea aphid cDNA array, INRA Rennes, 3360 spots, v1
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Acyrthosiphon pisum
Manufacturer OUEST-Genopole transcriptomic platform, Rennes, France
Manufacture protocol cDNAs were amplified from bacterial lysates and PCR products were resuspended into 20 µl of 1.5 M betaine, 3x SSC buffer.
Support glass
Coating polysine
 
Description Corning UltraGAPS II slides (Corning, NY, USA). Spotted by a Microgrid II spotter (Biorobotics, Cambridge, UK)
 
Contributor(s) TAGU D, SABATER-MUNOZ B, PRUNIER N, LE TRIONNAIRE G
Submission date Nov 21, 2006
Last update date Nov 28, 2006
Contact name Denis TAGU
E-mail(s) denis.tagu@rennes.inra.fr
Organization name INRA Rennes
Department UMR 1099 BiO3P
Street address BP35327
City Le Rheu
ZIP/Postal code BP35653
Country France
 
Samples (12) GSM146711, GSM146712, GSM146713, GSM146715, GSM146718, GSM146719 
Series (1)
GSE6363 Effect of day-length shortening on gene expression on pea aphid heads

Data table header descriptions
ID
EST Name Acyrthosiphon pisum (pea aphid) ESTs. From different cDNA libraries
Accession Number From dbEST in Genbank
Contig Formed by clustered ESTs. Description available on AphidBase
Block Number of the block on the spotted array
Column Number of the column on the spotted array
Row Number of the row on the spotted array
GB_ACC GenBank accession number
SPOT_ID
Description Putative homologous sequences (tblastx) in Uniprot

Data table
ID EST Name Accession Number Contig Block Column Row GB_ACC SPOT_ID Description
1a aphl3sd-xxxi-h6 CN752385 CTG_AP_52.5-ApAL3SD-IV-C2 1 1 1 CN752385 (Q76LV1) 90-kDa heat shock protein beta
2a aphl3sd-xxv-c8 CN752113 CTG_AP_198.5-ApAL3SD-III-D12 1 1 2 CN752113
3a aphl3sd-xvi-d1 CN751791 CTG_AP_1154.5-ApHL3SD-VII-B7 1 1 3 CN751791 (Q5T6F2) OTTHUMP00000000473
4a aphl3sd-viii-b12 CN751475 CL_AP_9968.5-ApHL3SD-VIII-B12 1 1 4 CN751475 (Q9VZT7) CG12734-PA, isoform A
5a ApHL3LD-XVIII-D8 / no contig 1 1 5 ApHL3LD-XVIII-D8
6a ApHL3LD-XI-E11 CN753044 CTG_AP_193.5-ApHL3LD-XI-E11 1 1 6 CN753044 (Q56FC1) Ribosomal protein L12 variant 1
7a ApHL3LD-VI-A8 CN752796 CTG_AP_98.5-ApDT-III-G6 1 1 7 CN752796 (Q5XUA0) Putative cytosolic thioredoxin peroxidase
8a ApHL3LD-III-A12 CN752516 CTG_AP_122.5-ApHL3LD-III-A12 1 1 8 CN752516 (Q56FD2) Ribosomal protein L14
9a ApDT-XXIX-A3 CN750710 CTG_AP_218.5-ApDT-X-F6 1 1 9 CN750710 (Q6PPH4) Putative vacuolar ATP synthase subunit D
10a ApDT-XIX-A8 CN750412 no contig 1 1 10 CN750412
11a ApAL3SD-XX-H9 CN749908 CTG_AP_47.5-ApAL3SD-I-A12 1 1 11 CN749908 (Q4DUM5) Hypothetical protein
12a ApAL3SD-XIX-B3 CN749618 CTG_AP_4391.5-ApAL3SD-XIX-B3 1 1 12 CN749618
13a ApAL3SD-VII-B11 CN749290 CL_AP_6578.5-ApAL3SD-VII-B11 1 1 13 CN749290 (Q7Z7G8) Vacuolar protein sorting 13B (Cohen syndrome protein 1)
14a ApAL3SD-II-E5 CN749031 CTG_AP_9.5-ApAL3SD-II-E5 1 1 14 CN749031 (Q9VEZ6) CG10407-PA
15a Ap_SNI1_1_A04_T7 EC917572 no contig 1 2 1 EC917572
16a aphl3sd-xxv-d10 CN752116 no contig 1 2 2 CN752116
17a aphl3sd-xvi-d2 CN751793 CTG_AP_1394.5-ApAL3SD-VII-B3 1 2 3 CN751793
18a aphl3sd-viii-b4 CN751478 CTG_AP_90.5-ApHL3SD-V-D8 1 2 4 CN751478
19a aphl3sd-ii-d2 CN751113 CTG_AP_561.5-ApAL3SD-XVII-A5 1 2 5 CN751113 (Q7PND3) ENSANGP00000010523 (Fragment)
20a ApHL3LD-XI-E4 CN753046 CTG_AP_1262.5-ApHL3LD-XI-E4 1 2 6 CN753046 (Q9VXC4) CG4678-PA, isoform A (Cg4678-pb, isoform b)

Total number of rows: 6720

Table truncated, full table size 618 Kbytes.






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