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Status
Public on Oct 09, 2003
Title
Agilent/Paradigm Arabidopsis 60mer in situ Genome Array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Arabidopsis thaliana
Description
This array contains 20,426 Arabidopsis thaliana gene probes as specified by Paradigm Genetics. It is manufactured by Agilent Technologies by in situ synthesis of 60mer oligonucleotides using an ink-jet printing method.
Contributor(s)
Qiu Y Submission date
Sep 09, 2003
Last update date
Jun 02, 2006
Contact name
Yang Qiu
E-mail(s)
yqiu@paragen.com Phone
919-425-3720
Organization name
Paradigm Genetics, Inc
Department
Investigational Genomics
Street address
108 TW Alexander Dr.
City
RTP,
State/province
NC
ZIP/Postal code
27709
Country
USA
Samples (8)
GSM9965 , GSM9966 , GSM9967 , GSM9968 , GSM9969 , GSM9970
Series (2)
GSE663 6 Auxins treatment
GSE664 indole-3-acetic acid (IAA) time course
Data table header descriptions ID ORF TIGR ATH1 ID
Description annotation of the sequence
SPOT_ID
Data table ID ORF Description SPOT_ID 515613
AT2G26430 putative cyclin
515614
AT2G36790 putative glucosyl transferase,an EST matching the 5 end of this gene (GB:AA605508) was originally described as polyadenylated (GB:AA006321) and is probably transcribed from the opposite strand
515615
AT2G31320 putative poly (ADP-ribose) polymerase
515616
AT2G27200 putative nucleotide-binding protein
515617
AT2G35980 similar to harpin-induced protein hin1 from tobacco
515618
AT2G18730 putative diacylglycerol kinase
515619
AT2G23380 curly leaf protein (polycomb-group),identical to GB:Y10580; contains a transcriptional regulator SET domain (PS50280)
515620
AT2G38400 putative beta-alanine-pyruvate aminotransferase
515621
AT2G07690 putative DNA replication licensing factor, mcm5
515622
AT2G26890 unknown protein
515623
AT2G27300 NAM (no apical meristem)-like protein
515624
AT3G10190 calmodulin-like protein,similar to calmodulin GB:AAA34015 (Glycine max), Pfam HMM hit: EF hand
515625
AT3G02000 putative glutaredoxin,similar to glutaredoxin GB:CAB10347 (Arabidopsis thaliana)
515626
AT3G11760 unknown protein
515627
NO INFORMATION
515628
AT3G22720 hypothetical protein,similar to hypothetical protein GB:AAD25583 from (Arabidopsis thaliana)
515629
AT3G18200 integral membrane protein, putative,similar to MtN21 (nodulation-induced gene) GB:CAA75575 (Medicago truncatula)
515630
AT3G17130 hypothetical protein,predicted by genemark.hmm
515631
AT3G12820 myb-related protein, putative,myb-related protein ZM1 GB:P20024 from (Zea mays), (Mol. Gen. Genet. 216 (2-3), 183-187 (1989))
515632
AT3G13090 ABC transporter, putative,similar to AtMRP4 (transport of glutathione-conjugates into the vacuole) GB:CAA05625 (Arabidopsis thaliana); contains Pfam profile: PF00005 ABC transporter
21939 1694 Kbytes .Supplementary data files not provided
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