NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL4941 Query DataSets for GPL4941
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 01 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 01.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 07, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186210, GSM186260, GSM186298, GSM186338, GSM186382
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1391_0587_0645 BLOCK1MM5000P00357757 chr1P70680583 GTTTTTTTAATATTCAATCAGTATTGCAGAAGGAAATTCAATTGGAGAGT NC_000067.1[70680583..70680633]
1391_0589_0645 BLOCK1MM5000P00310791 chr1P62961288 CCCACAGGATGGGCTGGAGAAATAGTCAGAGAGCTTCCAATAGAGTCATA NC_000067.1[62961288..62961338]
1391_0591_0645 BLOCK1MM5000P00061681 chr1P16733724 CTTTTATTGGAGTAAGAGCAGAGACTCAAACGCTTTCCATGTTGAGTTAA NC_000067.1[16733724..16733774]
1391_0593_0645 BLOCK1MM5000P00072112 chr1P19227160 TCTTGACTTCAAGTATAGGTCAATTCTGCAGTGACAATTTGGGTGAAAAT NC_000067.1[19227160..19227210]
1391_0595_0645 BLOCK1MM5000P00305773 chr1P62281824 TTTTGCTTCAGTGTTTAACAGTGGGTTTCTGAGCTTTGACATCATCCTTC NC_000067.1[62281824..62281874]
1391_0597_0645 BLOCK1MM5000P00113054 chr1P26458378 TCCCTGCCTTCCATGTTGGTTTCTCCTACTGTAGTATTGGCATCTATTTC NC_000067.1[26458378..26458428]
1391_0599_0645 BLOCK1MM5000P00321287 chr1P64588112 CTAGTCCCCCGGTAAACAATCACATTGTTTAAAACTAAAGGGCAATCTGT NC_000067.1[64588112..64588162]
1391_0601_0645 BLOCK1MM5000P00061927 chr1P16767132 ATGACAAACCACTTGAAGCTCCTGGTAGCATGACAGATCAAAAGCCTCTG NC_000067.1[16767132..16767182]
1391_0603_0645 BLOCK1MM5000P00097735 chr1P23773597 GGGTCTTTTTCCATTTCTTCATTATAATGGCCTAATAAATCCTTATTCAT NC_000067.1[23773597..23773647]
1391_0605_0645 BLOCK1MM5000P00336625 chr1P67282967 TGGTACTGCAGAGCCTTGCAACCATTTCTGCCCCTGAGGACAGTTGCCAT NC_000067.1[67282967..67283017]
1391_0607_0645 BLOCK1MM5000P00021347 chr1P8497781 TCCTAAGAAGAACCTGTAGTATCGAGACTCACTGCATCACAAGCTCAGAA NC_000067.1[8497781..8497831]
1391_0609_0645 BLOCK1MM5000P00309196 chr1P62750581 CTCTGCCCCCCTTTATCAAACTCCATTTCTTGCGCCTGCATTTCCCTCCC NC_000067.1[62750581..62750631]
1391_0611_0645 BLOCK1MM5000P00335742 chr1P67134108 GCTTCTTTTGAAGGTAAAGTCTGCAAGAAAAAAATGTCAAACTTTCACTT NC_000067.1[67134108..67134158]
1391_0613_0645 BLOCK1MM5000P00161869 chr1P36532483 ACTAATGTGGCCAGACAGACTAACAGGGAGAATGTACTCCCGTTGCCCTC NC_000067.1[36532483..36532533]
1391_0615_0645 BLOCK1MM5000P00097968 chr1P23815798 CAAACTAATTATTTTTTGTAGAACATGATTTTAATATTTTCAACGGTTAA NC_000067.1[23815798..23815848]
1391_0617_0645 BLOCK1MM5000P00326768 chr1P65466285 ACTTTTACATTTGGGGTAGTTAAAATGCCCTTTTGTAAATATTTCACAAA NC_000067.1[65466285..65466335]
1391_0619_0645 BLOCK1MM5000P00134931 chr1P31324215 GTTTTCTTTTACAAAAAAAAAAGCATCTTAAGGATTATATGGAGCTTTTA NC_000067.1[31324215..31324265]
1391_0621_0645 BLOCK1MM5000P00223852 chr1P47127706 CTGGGAATTTTTTGATCTGGGCATTGGTTTGAGGTAATACTCCCCCTCGC NC_000067.1[47127706..47127756]
1391_0623_0645 RANDOMRANDOM00000974 RANDOM_GC11_GC28P0 TTGTTATACGTTCCCCGATTATGAACGCAATCGAAAAACGTATCTTGCTC
1391_0625_0645 BLOCK1MM5000P00054220 chr1P15236524 TGTCATATTTCAGAGTTTTATACTAAGAGTTGGGCATCTGATACCTCAGA NC_000067.1[15236524..15236574]

Total number of rows: 390619

Table truncated, full table size 50834 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap