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Platform GPL4942 Query DataSets for GPL4942
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 02 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 02.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 07, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186211, GSM186261, GSM186299, GSM186339, GSM186383
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1392_0598_1024 BLOCK1MM5000P00474709 chr1P89618222 TGTTAAATGTTTCTGACCTTTTTAATGCTGAAGTGAAATCAGTCACATAA NC_000067.1[89618222..89618272]
1392_0710_1024 BLOCK1MM5000P00541954 chr1P102847815 TTCTTTTAGCATTGGTGTGCCTAAGCATGTAGGGCTGTGTGGGAAAGAAA NC_000067.1[102847815..102847865]
1392_0712_1024 BLOCK1MM5000P00671243 chr1P130798741 GAAGGAAGATAGAGTCTCCGCCCCATGCTAGGAGGATCCCAGTCTTCCAG NC_000067.1[130798741..130798791]
1392_0714_1024 BLOCK1MM5000P00483757 chr1P90931777 AGGAGACCAGGCTGGCAAGGTGGCCCTGGAAGAGGATGGTGCCACTGGGG NC_000067.1[90931777..90931827]
1392_0716_1024 BLOCK1MM5000P00660767 chr1P128893058 GATTGGGAAAAGAAAGTTTACTTATTTTCATAGTGTCTTTCTTCTACTTT NC_000067.1[128893058..128893108]
1392_0718_1024 BLOCK1MM5000P00490211 chr1P91856439 CGAGCTGGGGTTCTATCCTGATGGAGTGGTTACAAGTCCACATTCACTAA NC_000067.1[91856439..91856489]
1392_0720_1024 BLOCK1MM5000P00457600 chr1P87010248 CGTGATTCTCTAAGAGTTGGCTTGGTCTTCCTTACCAGGACAAACGGGTG NC_000067.1[87010248..87010298]
1392_0722_1024 BLOCK1MM5000P00597206 chr1P115970306 CTTGAATCCAGAACTTCTTTTTTCTCCTAATTTTCTGACTGAATTCCTAG NC_000067.1[115970306..115970356]
1392_0724_1024 BLOCK1MM5000P00536941 chr1P101582003 TATGGCTTAATTTTTCAGGTGTATTTGAGGGTTGGTTTTGTTTATTTTTT NC_000067.1[101582003..101582053]
1392_0726_1024 BLOCK1MM5000P00727245 chr1P139433229 CCATTTCTACATGTTATTGTCTTCTTTCCCTTAAGTACATAATAGTTCTG NC_000067.1[139433229..139433279]
1392_0728_1024 BLOCK1MM5000P00527850 chr1P99508570 TTTTCTTTACATTTTCTGTCATGTCTATGCAGCCAGATTTGGCATGCTTT NC_000067.1[99508570..99508620]
1392_0730_1024 BLOCK1MM5000P00490068 chr1P91841011 TGAACAAACAGCCTGAAACTGTGGTGCTGCCTTTACCTCCTTGAATCGTT NC_000067.1[91841011..91841061]
1392_0732_1024 BLOCK1MM5000P00725891 chr1P139204968 GTAATTGGAGGGAGGGTATCAAAAAATATTTCTCAAGTACTACCATCTGC NC_000067.1[139204968..139205018]
1392_0734_1024 BLOCK1MM5000P00592631 chr1P114812829 TTCTGTAGGAGACTTATCATTTAACAGTTCTCTCTATATAAATCTAGATC NC_000067.1[114812829..114812879]
1392_0736_1024 BLOCK1MM5000P00404055 chr1P77968806 CTCCTGCCGCTTCTATCCCAGTGGAATAAATGCTTAAGTTAGGAGTGCAG NC_000067.1[77968806..77968856]
1392_0738_1024 BLOCK1MM5000P00643659 chr1P125772660 TCTCATTTTCTCCTCGGTGGCCTCACTGCTTCTTAGATGTGGTTGCATGC NC_000067.1[125772660..125772710]
1392_0740_1024 BLOCK1MM5000P00671712 chr1P130882823 CTTAAGAGTTTCTGGAAGAGATGCTGTATTGATTGCTATAGTGAGAGAGA NC_000067.1[130882823..130882873]
1392_0742_1024 BLOCK1MM5000P00615472 chr1P120048325 TAGTTGTCTTTGTTAACTCCAGAAGTGACTCTGTTCTTCCCAGCTGTGAG NC_000067.1[120048325..120048375]
1392_0744_1024 BLOCK1MM5000P00511716 chr1P95605290 ACCCTATGTTTGAGAGTGACAGCCAGTGTGATAAACTGGGCAAGATTCTC NC_000067.1[95605290..95605340]
1392_0746_1024 RANDOMRANDOM00004701 RANDOM_GC11_GC28P0 GATTTTGCCAAATGATTATTGCTCGTGGCATTTTCACATTATGAACTGGG

Total number of rows: 390619

Table truncated, full table size 51606 Kbytes.




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