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Platform GPL4944 Query DataSets for GPL4944
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 04 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 04.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 07, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186214, GSM186263, GSM186301, GSM186341, GSM186385
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1394_0762_1024 BLOCK1MM5000P01388497 chr2P61267073 TGAATACATACATTTTAGGAGGAATCACAGTGTACTGTGGAACTAAATGG NC_000068.1[61267073..61267123]
1394_0764_1024 BLOCK1MM5000P01375308 chr2P59276272 GGGCTGGTGGACTCGCTGTTGTATGTGATCCACACGTGTGTGAACACTTC NC_000068.1[59276272..59276322]
1394_0766_1024 BLOCK1MM5000P01398456 chr2P62907780 CTATACTGCCTGGATGACCAGGAAGGAGAGAAGTAGTATAGAACCAAATG NC_000068.1[62907780..62907830]
1394_0768_1024 BLOCK1MM5000P01520580 chr2P81924676 TCATGGTTTGATATTCACTCATGTACTTAGTAGCAAATAGATTACAAGGA NC_000068.1[81924676..81924726]
1394_0496_1024 BLOCK1MM5000P01197229 chr2P28357605 GCTAATTAGGGCTTTGTGATCAGCCTGCCTAAACCAGCAGAGGCTGGCAT NC_000068.1[28357605..28357655]
1394_0498_1024 BLOCK1MM5000P01410407 chr2P64897149 TGGCCATGCTTACAGCGGACAGGATCAAACTCTAGAGGGTGTTCCTGCCC NC_000068.1[64897149..64897199]
1394_0500_1024 BLOCK1MM5000P01348716 chr2P54152391 GAGAAATTCAAAGTCATTATTATTTAGTCTTCATCAAATAATTTTCACCT NC_000068.1[54152391..54152441]
1394_0502_1024 BLOCK1MM5000P01177001 chr2P25499360 CTCTAGAGGGAGAAAGAGAGGAGAGGAATCTACCAGGAGGCAACCTGGTG NC_000068.1[25499360..25499410]
1394_0504_1024 BLOCK1MM5000P01400580 chr2P63210534 CACTGAAAGCTTCAATATGGGTAGTTTCGAATGTATAGATATATATGCAA NC_000068.1[63210534..63210584]
1394_0506_1024 BLOCK1MM5000P01531400 chr2P84163189 AATTCAATGTAAATAATACAGACTTTTTTTTAAAGTTTATTACAAGTGGC NC_000068.1[84163189..84163239]
1394_0508_1024 BLOCK1MM5000P01278368 chr2P42148944 AATCTTGGCATTATAAGGGGTGCCTTACCAGAAATAACTGACCGAACTAC NC_000068.1[42148944..42148994]
1394_0510_1024 BLOCK1MM5000P01517535 chr2P81274534 ATATTAACTGATGTTATTCTATAGTTGAGATATTGAGTACTTATTTTTAA NC_000068.1[81274534..81274584]
1394_0512_1024 BLOCK1MM5000P01404226 chr2P63909971 CCCAATCAGCAGTGCTGAGTTCCCAGCTAATATCCGGGGGACTCGCATTG NC_000068.1[63909971..63910021]
1394_0514_1024 BLOCK1MM5000P01367499 chr2P57984890 GGGCCCTCATGTTTGGCTCTGTTTTAGCTTTCGTGACTTTCCTGTAATGA NC_000068.1[57984890..57984940]
1394_0516_1024 BLOCK1MM5000P01328960 chr2P50784899 AAACCACACACTCAGCCATTTCAACTTGGAAAGAAATATTTCAAGCATTT NC_000068.1[50784899..50784949]
1394_0518_1024 BLOCK1MM5000P01254706 chr2P37543882 AAAGTAGGAAAGATGTTCTTTACAAATAATTTTGATCAAGTAAGTATGTG NC_000068.1[37543882..37543932]
1394_0520_1024 BLOCK1MM5000P01381856 chr2P60259990 TTACCTTTGATTTTGTCTGAGACGAGGACCTCTTGTTTGCCTGTGTGTTT NC_000068.1[60259990..60260040]
1394_0522_1024 RANDOMRANDOM00001755 RANDOM_GC11_GC28P0 ACGTGAGTCAACTGGTCAGTGGCATCACCCACTCTAGGGTACGGACCCAA
1394_0524_1024 BLOCK1MM5000P01152164 chr2P20645833 TGTAAGGCTGGGTTTATCTTATGTCACCTGATGCCTTCTCTCTAACCTCA NC_000068.1[20645833..20645883]
1394_0526_1024 BLOCK1MM5000P01226704 chr2P32783712 ATATGTTACTGTAATTTCCTAGGCGTCCACGCCTGCCTACTAGAGCATCT NC_000068.1[32783712..32783762]

Total number of rows: 390619

Table truncated, full table size 50914 Kbytes.




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