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Platform GPL4945 Query DataSets for GPL4945
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 05 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 05.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 07, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186215, GSM186264, GSM186302, GSM186342, GSM186386
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1395_0726_1024 BLOCK1MM5000P01747637 chr2P122485471 CTTCAAAAGACATAACATGACACAATAAACTGTTGTGTTCTTTGCAATCA NC_000068.1[122485471..122485521]
1395_0728_1024 BLOCK1MM5000P01563325 chr2P90988200 TTGCATTCTCTCCACAAAGCCCACAATCTGTCTGCACATCTCCCCACGGG NC_000068.1[90988200..90988250]
1395_0730_1024 BLOCK1MM5000P01884638 chr2P145132572 TGATAATGTAGGTGGCTGGCGTTTAACTCTTCTGAGAACTTGGTTACCCA NC_000068.1[145132572..145132622]
1395_0732_1024 BLOCK1MM5000P01799525 chr2P131112107 ATGACTGAAGCATTCCCAATGGGGAGGAATCCTAAGCACACATGTGCATG NC_000068.1[131112107..131112157]
1395_0734_1024 BLOCK1MM5000P01735595 chr2P120483359 TCCCAGTGGAGTTAGAGAAGAGGCTCCAGGTCCATGCCCAAAAGAGTGCC NC_000068.1[120483359..120483409]
1395_0736_1024 BLOCK1MM5000P01606789 chr2P98496331 ATTAAAGTTCATGATACTAGGAAAGCCTGGTTTGGTATCATGATGCCATT NC_000068.1[98496331..98496381]
1395_0738_1024 BLOCK1MM5000P01678679 chr2P111330791 CCAGAGGAGGGAAGGTTGACATTGGAGGATTGGAAGTGAGTAGGTAGGAA NC_000068.1[111330791..111330841]
1395_0740_1024 BLOCK1MM5000P01569560 chr2P91957365 TCAACATTTTTCTCACAAAGACATCTGGGAAAGGGATCCAAAGGGCACTG NC_000068.1[91957365..91957415]
1395_0742_1024 BLOCK1MM5000P01619060 chr2P101358583 AGGGAGCAATCTTACAACAGGGACCTTCCCTCCCTAATGGGCACATTTAG NC_000068.1[101358583..101358633]
1395_0744_1024 BLOCK1MM5000P01909051 chr2P149012801 GAGGGGACACTTACTAGGGAGTAGTTATTTGGTAATTTTTCTCTGGATCA NC_000068.1[149012801..149012851]
1395_0746_1024 BLOCK1MM5000P01906061 chr2P148392377 CTACGGCTGCCTACAGAGTTACTGAGCTGATAGTAAACCTCAGACTTACT NC_000068.1[148392377..148392427]
1395_0748_1024 BLOCK1MM5000P01690097 chr2P113507526 GGTATTGGGAAAGGATCATTAACTTGGCAAGTCTGATTAAAAAAGGAGTA NC_000068.1[113507526..113507576]
1395_0750_1024 BLOCK1MM5000P01547306 chr2P87385160 TCCTGACCTTAGACACTTCTACTGCTCCTATCTCCAACTTCTCACAGCAC NC_000068.1[87385160..87385210]
1395_0752_1024 BLOCK1MM5000P01750045 chr2P122937525 AGTTTGATGCTAGGACATTGCTCTCAGCTGGGACAGAGTGTACAATGTTT NC_000068.1[122937525..122937575]
1395_0754_1024 BLOCK1MM5000P01916114 chr2P150539077 ATTCGCTATGTAAGTCTTGATCATGAATTAGGAACATAGGGAGGGAGAGG NC_000068.1[150539077..150539127]
1395_0756_1024 BLOCK1MM5000P01796156 chr2P130509956 CTTTGTGAACGGAGAAGCTGAACCAAAGATCTAAGACAGGGAGAGGAATG NC_000068.1[130509956..130510006]
1395_0758_1024 BLOCK1MM5000P01600083 chr2P97084312 TGCTAACACTCTCAATTTCATTCATCTGTTTTCAACTGCTATCTGGTGTT NC_000068.1[97084312..97084362]
1395_0760_1024 BLOCK1MM5000P01730611 chr2P119723795 AGGACTAAAGTTGAATCCAAGGAATACTAAAACTCGAAAACAAAGTGGAA NC_000068.1[119723795..119723845]
1395_0762_1024 BLOCK1MM5000P01710116 chr2P116492407 AACTCTTAGAATTTTACTGGGTCTCTAGTTTAAGACCATAACAATCTTTA NC_000068.1[116492407..116492457]
1395_0764_1024 BLOCK1MM5000P01555559 chr2P89259604 AATACAACAAATCAAGTATACAATACACATTAATAATTGATTTAGTACAT NC_000068.1[89259604..89259654]

Total number of rows: 390619

Table truncated, full table size 51807 Kbytes.




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