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Platform GPL4950 Query DataSets for GPL4950
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 10 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 10.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 07, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186220, GSM186269, GSM186307, GSM186347, GSM186392
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1400_0568_1024 BLOCK1MM5000P03560670 chr4P116597894 TTGTGTGAGCAAGCACTAGGCTGGGCCAGGCTGAGTGTGGGTGAAGCATG NC_000070.1[116597894..116597944]
1400_0570_1024 BLOCK1MM5000P03476906 chr4P101346147 GGGGGATTTACCGCCATGGAACCCTGCCATGGCCTCATCTCAGACTGGTT NC_000070.1[101346147..101346197]
1400_0572_1024 BLOCK1MM5000P03495433 chr4P104092396 TTGTTGTCTGACATCAGTTGGGTCTTTGAGGTGCTCCCTTCACACTGTGC NC_000070.1[104092396..104092446]
1400_0574_1024 BLOCK1MM5000P03521067 chr4P108290452 TGGTCCCTAACATCAGTGCCATACATACTGAGTCAGCCTGAAAACTCGCA NC_000070.1[108290452..108290502]
1400_0576_1024 BLOCK1MM5000P03597640 chr4P123537628 AACATCCGTCCCTGCTAATCTGTGGCCAGGATGCCTGTGCAGATGGATAT NC_000070.1[123537628..123537678]
1400_0578_1024 BLOCK1MM5000P03524040 chr4P108779405 GATTTACTTAAACCCTTTTTCAATATATTTTGATCATATTCCTTCTTCTA NC_000070.1[108779405..108779455]
1400_0580_1024 BLOCK1MM5000P03531075 chr4P110105697 TCCCTTCCTCTCTACAGATCTCACTTTACATTCATGACTGTGTATGCCTG NC_000070.1[110105697..110105747]
1400_0582_1024 BLOCK1MM5000P03689614 chr4P138415123 CAAATCTTTTTTTTTTCTAAGATCTCTTTTTAGTTAACAATGAGTCTTAC NC_000070.1[138415123..138415173]
1400_0584_1024 BLOCK1MM5000P03800092 chr5P5224910 GACCATACATTAAATTATTGGTCAGTCTCAGTTCATCTAACTTAACGGTG NC_000071.1[5224910..5224960]
1400_0586_1024 BLOCK1MM5000P03703762 chr4P140581124 TACCAGGGAGTGACTTTTAAGGCATAGTCCAGGTTAGTCTAAGACTCATG NC_000070.1[140581124..140581174]
1400_0588_1024 BLOCK1MM5000P03807251 chr5P6770823 TGCTTTGTTAAATACATTGAAATATGGAAGGACCCTATTTGTCCAATACT NC_000071.1[6770823..6770873]
1400_0590_1024 BLOCK1MM5000P03766891 chr4P151376675 TCCACCTCAAATAGGGGTGGAGAGCTCCCCAAATTCATTCTTCCTTTGTT NC_000070.1[151376675..151376725]
1400_0592_1024 BLOCK1MM5000P03495156 chr4P104044891 CTTAAGAGTGGTTTTGGCATACTAGAGAGATCAGGTGGCTGGTCAGTTGT NC_000070.1[104044891..104044941]
1400_0594_1024 BLOCK1MM5000P03796624 chr5P4720080 GAATTCAGGATGGACTGAAAAGTAGTAGATTGGGAAGATTCAGACACAAG NC_000071.1[4720080..4720130]
1400_0596_1024 BLOCK1MM5000P03586616 chr4P121768034 CTGTTTCATCTATGGCAGCACTTTCCTACCTTGTGACGAATAATCTGCTG NC_000070.1[121768034..121768084]
1400_0598_1024 BLOCK1MM5000P03746507 chr4P148453907 TTGAATGGTGTTTCTCATAATCTGTGAACGCATAGATTCTGAATTCATTG NC_000070.1[148453907..148453957]
1400_0710_1024 BLOCK1MM5000P03709040 chr4P141425607 GTATTTGGGCTACTCAGCTAAAATCTCCTGGCATGGCAGAAAATATATTT NC_000070.1[141425607..141425657]
1400_0712_1024 BLOCK1MM5000P03735674 chr4P146778994 CCTCAACTGGCTGGAGCTGTTGGGAGGAAGCCGACCAAGGGAAGAAGACC NC_000070.1[146778994..146779044]
1400_0714_1024 BLOCK1MM5000P03692886 chr4P138876776 CCTCCCTCTCCCATCTCACCCAGCCCAGCAGGCACTGCCTATTCCTGGTC NC_000070.1[138876776..138876826]
1400_0716_1024 BLOCK1MM5000P03527058 chr4P109450891 GTATCAGACATTCCCAGGATTGTGATGTATCTGTGTTTGTCCCTCACTTA NC_000070.1[109450891..109450941]

Total number of rows: 390619

Table truncated, full table size 51741 Kbytes.




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