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Platform GPL4952 Query DataSets for GPL4952
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 12 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 12.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 07, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186222, GSM186271, GSM186309, GSM186349, GSM186394
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1402_0728_1024 BLOCK1MM5000P04420052 chr5P115270512 TCTGGCCACTAGGAAGCTAAGGGCAATGTGAATTTGCTGAGCTGGAGGTG NC_000071.1[115270512..115270562]
1402_0730_1024 BLOCK1MM5000P04533189 chr5P135152059 GGCGGTGTCTACCCACGTGCTGGTGGTTGGCCCTGTGAGGGGAGGCCATA NC_000071.1[135152059..135152109]
1402_0732_1024 BLOCK1MM5000P04357209 chr5P104493368 TGTGATGATCTGTTTGCTTACTTTTAACATTTATCATGTTCAGCTCCCAT NC_000071.1[104493368..104493418]
1402_0734_1024 BLOCK1MM5000P04591377 chr5P146122895 AAAAAAAAAAGCAAAGAACGTAACAAGAAATGGTCCTGCTTGCCCTAAGA NC_000071.1[146122895..146122945]
1402_0736_1024 BLOCK1MM5000P04517270 chr5P132160015 CCTTTGATCTCTGATTGGTGGATAACAAAGGACCTAAGGTCACTTGAGTG NC_000071.1[132160015..132160065]
1402_0738_1024 BLOCK1MM5000P04287404 chr5P92405290 AGAATTTGCTCTTTGAGCCCTAGTGAGTCAGCAAATGGAATCCTCAAAGG NC_000071.1[92405290..92405340]
1402_0740_1024 BLOCK1MM5000P04455508 chr5P121006627 AAATCTTTTTACCTGAAACTCTTGTGAGCTAATGTACAGACTCTTATCTT NC_000071.1[121006627..121006677]
1402_0742_1024 BLOCK1MM5000P04588244 chr5P145622073 ATCTAGGCTGATTAAGGAGACAGTCCACCCTTCTAATCATACCACAAAAA NC_000071.1[145622073..145622123]
1402_0744_1024 BLOCK1MM5000P04314054 chr5P97021937 AAGGCTGATAGCTGAACAGCCAGTCTTCTTCACCTCTTGTCTCTGGAGCT NC_000071.1[97021937..97021987]
1402_0746_1024 BLOCK1MM5000P04358868 chr5P104736199 GAATCTAGGCACAAGCCATTCAAGACTTCATACTCGGTAGAAAACTTTTT NC_000071.1[104736199..104736249]
1402_0748_1024 BLOCK1MM5000P04444263 chr5P119139863 CAGCCAAAATGGCAGGGGCAGAATAAAGAGAGAAGGTTCACTTAAGAGAT NC_000071.1[119139863..119139913]
1402_0750_1024 BLOCK1MM5000P04546157 chr5P137520334 CAGTCCCATCCCATGAGTGCCAGGCTCCCTTTGGCTGTACTTTGTAGATC NC_000071.1[137520334..137520384]
1402_0752_1024 BLOCK1MM5000P04518402 chr5P132374904 GGATTCGGAGGCCTGAGCCAGCCTGGGCTCCAGAATAAGATGTCCCAACA NC_000071.1[132374904..132374954]
1402_0754_1024 BLOCK1MM5000P04344930 chr5P102114498 CTCGTTAAAATGAGCCAAGACGATGTTAAGGGAGTGAGAGGGAAGAAAAT NC_000071.1[102114498..102114548]
1402_0756_1024 BLOCK1MM5000P04280950 chr5P91179272 TGATCACTTTTAAAATATATTTTTTCTTTCAGCAATTCCCAAGGCTTTTT NC_000071.1[91179272..91179322]
1402_0758_1024 BLOCK1MM5000P04561003 chr5P140146438 TTTGTAAGTGTCCTGGCCTGGCCTGGCCTCCTTCTCCCACACAGGCGCCT NC_000071.1[140146438..140146488]
1402_0760_1024 BLOCK1MM5000P04375328 chr5P108104224 ACCTTCTCCTCTCCCCAGCTGCGCTCCAGGACACTCTCAGGGGCATAACC NC_000071.1[108104224..108104274]
1402_0762_1024 BLOCK1MM5000P04598066 chr5P147353951 TGTGCATATTCCATATCTAATATCCTCTTCCCACACCCTCAGATGGCACA NC_000071.1[147353951..147354001]
1402_0764_1024 BLOCK1MM5000P04407041 chr5P113046697 TGAATTAATGAGTCAACAAATTGAATTTGTTGCATGGATCCAGCTACCAG NC_000071.1[113046697..113046747]
1402_0766_1024 BLOCK1MM5000P04385018 chr5P109529021 CTCCGTGGGGATTTCTGTAAAAGCCACAGCCAACATCCACAAAGACCAGC NC_000071.1[109529021..109529071]

Total number of rows: 390619

Table truncated, full table size 51701 Kbytes.




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