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Platform GPL4954 Query DataSets for GPL4954
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 14 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 14.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 07, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186224, GSM186273, GSM186311, GSM186352, GSM186396
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1404_0209_0597 BLOCK1MM5000P05158911 chr6P102725390 GAAAACAGAACAATAAGAATGTGGGAGTCTTGGATCAGACCTTCCAAGGT NC_000072.1[102725390..102725440]
1404_0211_0597 BLOCK1MM5000P05177199 chr6P106094420 TGAGTGCCTAGAAATGCACAATGTCATGGGCAAGAAGCAACAGAGGCAAT NC_000072.1[106094420..106094470]
1404_0213_0597 BLOCK1MM5000P05069982 chr6P88628408 TTTCTTTCTGATCAAAATCTAACTCATGTTTTATATTATCCATTTGAACA NC_000072.1[88628408..88628458]
1404_0215_0597 BLOCK1MM5000P05174413 chr6P105524101 CAATCTCTCTATTGTTTCCCTTCAGTAAGAATGCATTGCACATCACACAA NC_000072.1[105524101..105524151]
1404_0217_0597 BLOCK1MM5000P05270597 chr6P121905473 ATTATTTATAAGAATGGAATTTGCCTTCCATCCCTGGTCTTACGTAGAGA NC_000072.1[121905473..121905523]
1404_0219_0597 BLOCK1MM5000P05243884 chr6P117568852 TGGATAGGGAAAGGGGTGGAGACATACAGTCTGCTTTGTGTTGAAACCCA NC_000072.1[117568852..117568902]
1404_0221_0597 BLOCK1MM5000P05131156 chr6P98384853 ACAGTTGCCCCAGGCATGTAGAAGTTGGTAATGTTAATGTTCCTTTGACC NC_000072.1[98384853..98384903]
1404_0223_0597 BLOCK1MM5000P05314127 chr6P130444829 CCTCACACTAGGGCTATTTCTTGTGATATAAAAACATTCTCTGGGGTATT NC_000072.1[130444829..130444879]
1404_0225_0597 BLOCK1MM5000P05366722 chr6P140611100 TTGTGTCCCTATTCAATTTGAAATCTAACTTAAACAGCAGTTGCCCTTGC NC_000072.1[140611100..140611150]
1404_0227_0597 BLOCK1MM5000P05201355 chr6P110493930 TTTCTCGTTGTTTTCAGTATTAGAGGTAAAATTTTAAATCTAACTTGCCA NC_000072.1[110493930..110493980]
1404_0229_0597 BLOCK1MM5000P05124675 chr6P97413326 TACATCAAAAGTCAAAGGGTAGGGGCGAGAAGAGGGAAAGGCATGATTAA NC_000072.1[97413326..97413376]
1404_0231_0597 BLOCK1MM5000P04999638 chr6P76026558 TACACAGTCCAAATCATCCATCCACTCCACACATTCCTTCAGTAGGTGGG NC_000072.1[76026558..76026608]
1404_0233_0597 BLOCK1MM5000P05153979 chr6P101823155 ATTCCCTCCTTTCAGATCTATTGATAAAGGCATTATCCAACAATGACAAG NC_000072.1[101823155..101823205]
1404_0235_0597 BLOCK1MM5000P05321773 chr6P132667669 ATTTGGAGGATAGCAACTGAAGTAATTAACTGAAACTATTATGCAGAAAA NC_000072.1[132667669..132667719]
1404_0237_0597 BLOCK1MM5000P05210019 chr6P112066885 GATATGGAATCGATTTATCTGACCCTACCCTCCCTTTCAGACTCAAATTC NC_000072.1[112066885..112066935]
1404_0239_0597 BLOCK1MM5000P05052150 chr6P85570456 AGTGCATACATACATGCATGCAGGAAAAACACCCAGACACATAAAAATGG NC_000072.1[85570456..85570506]
1404_0241_0597 BLOCK1MM5000P05232285 chr6P115591587 ATAAGTGGCTGGACTTGAGAAAGGGAACATGATTAGAAGTGTTGGGGATG NC_000072.1[115591587..115591637]
1404_0243_0597 BLOCK1MM5000P05194296 chr6P108968922 AACACTCTGGTTCATTTTTAAAAGCAATGGGTCGTTTTAAAAATGGCTTG NC_000072.1[108968922..108968972]
1404_0245_0597 BLOCK1MM5000P05225726 chr6P114603084 TTCTAGAGGAGTTCCCTGGGACAATCCAGGGGTCTTGGACCTCCAGAGAG NC_000072.1[114603084..114603134]
1404_0247_0597 BLOCK1MM5000P05070246 chr6P88661247 CTAACACTCTCAATGACTTGTCCTGATAAAAATCTGGTAGTTTTTCTACT NC_000072.1[88661247..88661297]

Total number of rows: 390619

Table truncated, full table size 51572 Kbytes.




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