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Platform GPL4955 Query DataSets for GPL4955
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 15 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 15.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 07, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186225, GSM186274, GSM186312, GSM186353, GSM186397
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1405_0529_0591 BLOCK1MM5000P05373511 chr6P141787797 TGCATACTAGGTGATCCTCCTAGCCATTCTCTTTTCTCAAAGCAAGCATT NC_000072.1[141787797..141787847]
1405_0531_0591 BLOCK1MM5000P05636393 chr7P50732417 GGTACCTCGCAGAGGTGGAAGAGTGTGTGAGGTGACTGCTGAGATAGCTC NC_000073.1[50732417..50732467]
1405_0533_0591 BLOCK1MM5000P05574527 chr7P37711936 ACTGAGTGCTTTTAGGACAGAACCTGTGAGGACATGGAGCCCACTCTCCT NC_000073.1[37711936..37711986]
1405_0535_0591 BLOCK1MM5000P05374527 chr6P142010890 ATTTTTTTAAAACAACCCATACACTTTTCTTTCTAGTGGCTTCTAGGAAT NC_000072.1[142010890..142010940]
1405_0537_0591 BLOCK1MM5000P05565751 chr7P36411015 TTCATGCATTCCTCAAGGATCAAAGATGGGCCTCTACACAGCAAGCATGG NC_000073.1[36411015..36411065]
1405_0539_0591 BLOCK1MM5000P05477928 chr7P18053032 GGCTGCGCTCATGGTGAAGGCTTTCATGAGGAGGCCGTAGCGACCCCGCT NC_000073.1[18053032..18053082]
1405_0541_0591 BLOCK1MM5000P05692328 chr7P59585765 TGTTAAGGTAAAAGTGAGATTGAAAATGTAGCTTATAGTTTAAAGTGAGT NC_000073.1[59585765..59585815]
1405_0543_0591 BLOCK1MM5000P05728218 chr7P65805795 TATAGAGAATATTCAGACCTGAGTAACATGCGTGCCCTAAACAATGAGAA NC_000073.1[65805795..65805845]
1405_0545_0591 BLOCK1MM5000P05405239 chr6P146913848 GTTGGGTTGCAAATCCATTTTATCAAAATTTCTCCAAGGAGAAAGTAAGA NC_000072.1[146913848..146913898]
1405_0547_0591 BLOCK1MM5000P05612373 chr7P45131424 GGGTACGCAGCGTGTTTTCAGCAAGAGGATTGAAATATATGGACTGCATG NC_000073.1[45131424..45131474]
1405_0549_0591 BLOCK1MM5000P05616016 chr7P45913907 AGAAGGTCAGATAATAGGAAGAAATGAGGTGACTAGAAGGATGCTTGCAT NC_000073.1[45913907..45913957]
1405_0551_0591 BLOCK1MM5000P05455437 chr7P13038044 ACATGGCTCCAACTTACAAGGCTTCTCTGCTTGTGGTCTCCCAAGCATCA NC_000073.1[13038044..13038094]
1405_0553_0591 BLOCK1MM5000P05394857 chr6P145199624 GGCCTGTAGAGGAGAAAGGGAAAGTGCCTGGAGCCCACACTGCATGGGCT NC_000072.1[145199624..145199674]
1405_0555_0591 BLOCK1MM5000P05411893 chr6P147934975 TCTCGCCTCGACAATCACCCCCACCCCGCCTCAGCCTCCCTGGCTTCCTT NC_000072.1[147934975..147935025]
1405_0557_0591 BLOCK1MM5000P05417963 chr6P148961867 TTCTGAAAGGATAAATTCTCGTTTCAGGCAGCCACAAAATCTTTGTTCAA NC_000072.1[148961867..148961917]
1405_0559_0591 BLOCK1MM5000P05472176 chr7P17032249 CCTGCAGAAGAGGGACAACTAACGCCCTATTCTGCATCCAGGCCCTAGAC NC_000073.1[17032249..17032299]
1405_0561_0591 BLOCK1MM5000P05449851 chr7P10875563 CCATGCTGGGGACTGAACTCATATCCTTGTGGCTCTGGCTCTACTGACAG NC_000073.1[10875563..10875613]
1405_0563_0591 BLOCK1MM5000P05459738 chr7P13817011 TGTGCCGGGACGGCGGGTGGGATGGGGGACTGGAGTTGAGTGCGGGGCTG NC_000073.1[13817011..13817061]
1405_0565_0591 BLOCK1MM5000P05569543 chr7P36920556 AGGATGAAGGGTTCAGAGGAGCAATGGACTACGGCTACTGAGACCTTCTG NC_000073.1[36920556..36920606]
1405_0567_0591 RANDOMRANDOM00000884 RANDOM_GC11_GC28P0 GTAACTCATTAGATCCTTCATATTATACTTCCTAGCGGATTATATCTCGC

Total number of rows: 390619

Table truncated, full table size 51002 Kbytes.




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