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Platform GPL4956 Query DataSets for GPL4956
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 16 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 16.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 07, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186226, GSM186275, GSM186313, GSM186354, GSM186398
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1406_0091_0593 BLOCK1MM5000P05778183 chr7P75477653 GCTATGGGTGGTGTGGTATGTGTCATAGGTCCAAGGTGAAGAGGGAGATG NC_000073.1[75477653..75477703]
1406_0093_0593 BLOCK1MM5000P05982421 chr7P111384413 ACTGACACTTGTAATATTGTGATATAGTTGTTGCTGATATACCTGCTTCA NC_000073.1[111384413..111384463]
1406_0095_0593 BLOCK1MM5000P05966322 chr7P108337753 TTGTCTAGTTATTACTGTCCTTGGAGACTTGTGCAAATAACTACAAATAT NC_000073.1[108337753..108337803]
1406_0097_0593 BLOCK1MM5000P06036999 chr7P120436492 TGCTTCCCCCTCCCTAGGCAGAGCGCCCTCTCACCCCCATCGACACCGCG NC_000073.1[120436492..120436542]
1406_0099_0593 BLOCK1MM5000P05812000 chr7P81388783 TCTTCAAAGCAAGAGGTCTGCCTGTGAAGTGGTTCCATTCAGCAGGTCCT NC_000073.1[81388783..81388833]
1406_0101_0593 BLOCK1MM5000P06052951 chr7P122848531 GAACTAACACACGAAACAACTTAGGAAACACGGCAAGGTCCTCTAGAGAC NC_000073.1[122848531..122848581]
1406_0103_0593 BLOCK1MM5000P05838305 chr7P85795290 ATCTCCGCTGCTGAGCCTAAATCCACCCTGCACTTCTGATGCTCAGTGTC NC_000073.1[85795290..85795340]
1406_0105_0593 BLOCK1MM5000P05926175 chr7P101556098 GCAATGCAATTCTACCTTAACAAGGTCCCTTAACCATGCTGGAGCTGTTG NC_000073.1[101556098..101556148]
1406_0107_0593 BLOCK1MM5000P06084110 chr7P127259252 CGGAGTGTTTCAGTTCCATGGCTTCCAGGTTTGGGCTGTCAAGAGGAGGG NC_000073.1[127259252..127259302]
1406_0109_0593 BLOCK1MM5000P05822030 chr7P83111346 AGCAGCACTTTTGTCACAGCGCCTCTCAGTGTCAAAGCAAACAGGAGTAA NC_000073.1[83111346..83111396]
1406_0111_0593 BLOCK1MM5000P06124129 chr8P3677594 ACCCAGACAGACAGGTCCACTATTGTTTTAACTTAAAAACCAAGTGATGC NC_000074.1[3677594..3677644]
1406_0113_0593 BLOCK1MM5000P06015764 chr7P117162723 AAAGTAGAAGAGTTGGGGGTCTGTCTGTAGAAATACTGACACTTTGAGAC NC_000073.1[117162723..117162773]
1406_0115_0593 BLOCK1MM5000P05843173 chr7P86555583 TAGTCTGTTGTGAAAGAGGCTTATGCTGTAAAAGCGGGGAATTAGGTTGG NC_000073.1[86555583..86555633]
1406_0117_0593 RANDOMRANDOM00000513 RANDOM_GC11_GC28P0 ACCCGCACTACTCACAGGAATTAGAACTGTATAAGATAGAGAGGGAATAG
1406_0119_0593 BLOCK1MM5000P05884756 chr7P94294550 TGATTCCCACTTTCTCATCTACCAAAAGTAACTTTTTCATATAATTATAC NC_000073.1[94294550..94294600]
1406_0121_0593 BLOCK1MM5000P05972387 chr7P109394688 CTCCAGGTATGGCTCACAAAGCTTCTTGAGCCCTACAGAACCCCACCATC NC_000073.1[109394688..109394738]
1406_0123_0593 BLOCK1MM5000P05783578 chr7P76483419 ATGGTTCAGAGATTCAAACAGCAGCTGTGAGGGATATCGGGGAGGCATAA NC_000073.1[76483419..76483469]
1406_0125_0593 BLOCK1MM5000P06037721 chr7P120568428 ATTGTATAAGGCCTTTAGTAAAGGGTTGGGATTGGTAGTATGATACCTGT NC_000073.1[120568428..120568478]
1406_0127_0593 BLOCK1MM5000P05913415 chr7P99501097 GTCAGGAATACCATCTCCAGCTGTCTGTCGGAGTGCGGATCCGTGCATAT NC_000073.1[99501097..99501147]
1406_0129_0593 BLOCK1MM5000P06080938 chr7P126833849 AACGCCAGCATGTAGCCTCATGTGCTCTCCAACACTGGCCTGAGTTCTGA NC_000073.1[126833849..126833899]

Total number of rows: 390619

Table truncated, full table size 51477 Kbytes.




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