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Platform GPL4957 Query DataSets for GPL4957
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 17 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 17.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 07, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186227, GSM186276, GSM186314, GSM186355, GSM186399
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1407_0172_0588 BLOCK1MM5000P06329923 chr8P39352444 GAGACATTAACTGATCTGTTCATGTTGAAGGGTGGATGGCCCAATTATTC NC_000074.1[39352444..39352494]
1407_0174_0588 BLOCK1MM5000P06184882 chr8P13754083 TTATTTATTTGGTTGGTTTGCTTTTCTGTTTGTTATTATTGCTGCAGGAA NC_000074.1[13754083..13754133]
1407_0753_0587 BLOCK1MM5000P06451953 chr8P61348571 TTCATACATATCAATATCTATATTTCTACATGTCTGTGCATCTATTTACA NC_000074.1[61348571..61348621]
1407_0755_0587 BLOCK1MM5000P06139275 chr8P7109768 TTCAGTTTACATATTTTGACAATCATTATAATAAAGTCCGAAAATTTGAA NC_000074.1[7109768..7109818]
1407_0757_0587 BLOCK1MM5000P06511091 chr8P73547416 TAACCCAGGAGCCAGGACCACTGTATTTTTAGAAATGGTGAACCTCATAG NC_000074.1[73547416..73547466]
1407_0759_0587 BLOCK1MM5000P06170250 chr8P11703912 TCCAGTGTCTAGTGTCTTTGTTAGATAACCAGCAAATGTGGAAGTTGAGG NC_000074.1[11703912..11703962]
1407_0761_0587 BLOCK1MM5000P06457693 chr8P62620269 GGAATGAGTCAAGTAATTCACTGCTTTGGCAATCTAAATTATAGTAAGTC NC_000074.1[62620269..62620319]
1407_0763_0587 BLOCK1MM5000P06138160 chr8P6881424 TTAGACTGCAGGCTGAACATTTTCTATTCTTCAGAAGATATATTTCAATA NC_000074.1[6881424..6881474]
1407_0765_0587 BLOCK1MM5000P06312518 chr8P35942418 TCCCACACTGTTCTTCATATCAAAACTAGTGAAGTTGATTCTTATCAGCT NC_000074.1[35942418..35942468]
1407_0767_0587 BLOCK1MM5000P06326882 chr8P38714944 AAAACCAGATAAACACAAAATACACCCCCCTAAAAATAATAAACGTATGA NC_000074.1[38714944..38714994]
1407_0002_0588 BLOCK1MM5000P06275704 chr8P29921587 TGTGGAACATGTGACCACCAGATACCTCTGACTGCAAGAGGGGTAACGGG NC_000074.1[29921587..29921637]
1407_0006_0588 BLOCK1MM5000P06491747 chr8P69384541 CCTTGGGGAAGTCCAGTTTCCATCTCACCAGACTGAAAGGCAGGCTGTCA NC_000074.1[69384541..69384591]
1407_0008_0588 BLOCK1MM5000P06502186 chr8P71433281 GCCACCTCAGTGGGGAAGTGCAGTGCATTAGCTACTAAGCAACAAGGTGG NC_000074.1[71433281..71433331]
1407_0010_0588 BLOCK1MM5000P06185335 chr8P13821226 GGTGCTAAAGGAAAGAGCATCTTGTGGTGCTTTCTTTAATGAGTCAGCTC NC_000074.1[13821226..13821276]
1407_0012_0588 BLOCK1MM5000P06290543 chr8P32385747 TCCCCTTCCCTTTAAGACTCCTAAGCAGATACCTGGGTCATTGGCCAGTA NC_000074.1[32385747..32385797]
1407_0014_0588 BLOCK1MM5000P06510403 chr8P73379409 TTCCAAAATGGCAATGCTCATTTAAATCCATTTAACAAAAGACTGATGAG NC_000074.1[73379409..73379459]
1407_0016_0588 BLOCK1MM5000P06360789 chr8P44934864 CATCCGAGTCACTTACTTCTCTGACTTAGATGTTGAATTCATCATTATAG NC_000074.1[44934864..44934914]
1407_0018_0588 BLOCK1MM5000P06211029 chr8P18197165 ACCTCTTTATGCATCCATCACTTGCAGGAAAATTGAAAATTTAAATAAAG NC_000074.1[18197165..18197215]
1407_0020_0588 BLOCK1MM5000P06222739 chr8P20262949 TAGGTCCAGCACTTTTGATCAATGGCTGTTTGCCTTTGGAAGACCATACC NC_000074.1[20262949..20262999]
1407_0022_0588 BLOCK1MM5000P06489489 chr8P69025064 CAAATATGGGGGGTTAGATTTAGAATTAATGAGAATTAATCCTTAGGGTG NC_000074.1[69025064..69025114]

Total number of rows: 390619

Table truncated, full table size 50844 Kbytes.




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