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Platform GPL4963 Query DataSets for GPL4963
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 23 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 23.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 07, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186233, GSM186282, GSM186320, GSM186361, GSM186406
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1413_0762_1024 BLOCK1MM5000P08625837 chr11P68358504 AGCCCGTGAAACCCCAGGCAAGTGACTTTCTTTGTGCTTCTCAGTCTTGA NC_000077.1[68358504..68358554]
1413_0764_1024 BLOCK1MM5000P08535606 chr11P53996128 GGATACACTTAAACTGTCCTAGTAACAAGTAGATGACTAGCATATACTTG NC_000077.1[53996128..53996178]
1413_0766_1024 BLOCK1MM5000P08566764 chr11P59212531 TGTTTGTTTTGGGGATGCAGAATGTCAATTTCACAATTATAGCATGGAGT NC_000077.1[59212531..59212581]
1413_0768_1024 BLOCK1MM5000P08478646 chr11P44461881 CTGAGAACCCACAGGTTCCACATGGAGGTGAAGATGGAGGGTGATGAGTC NC_000077.1[44461881..44461931]
1413_0550_1024 BLOCK1MM5000P08550055 chr11P56520323 AAGATCAGCCTCATGCAAATATAACTAAATAATTAATACTGTTGAAGCCC NC_000077.1[56520323..56520373]
1413_0552_1024 BLOCK1MM5000P08519971 chr11P51389911 TTTCACATGTTCCCCATACTGTCCTCAGTAGAGCCACAGATTACTACCTG NC_000077.1[51389911..51389961]
1413_0554_1024 BLOCK1MM5000P08545098 chr11P55615615 AGCCCCAACATGATTTACTCATTAGTCCTTAATATTTGCTTGTGTGAGAA NC_000077.1[55615615..55615665]
1413_0556_1024 BLOCK1MM5000P08571096 chr11P59836263 CAGCCTGGCAGCTCCCATCTCTTAAGTTTCAACTGGGATTTCTCATCAGA NC_000077.1[59836263..59836313]
1413_0558_1024 BLOCK1MM5000P08503704 chr11P48636308 ATTTTAAAACCTGGAATGGTTGGCTGTTCAGAAACTACACAGATGCATCA NC_000077.1[48636308..48636358]
1413_0560_1024 BLOCK1MM5000P08784115 chr11P94225511 AAAGGGGGAAAACCCACTAACTCTTAGGGTCACATGACTGAGTACTGTTA NC_000077.1[94225511..94225561]
1413_0562_1024 BLOCK1MM5000P08615062 chr11P66762134 TTGCCACTTATTGTGTTGGTTTTATATTTTTACTATTAAAGTGTATACTT NC_000077.1[66762134..66762184]
1413_0564_1024 BLOCK1MM5000P08667437 chr11P75436415 TGCAGATATGATTTCAGACATTGTGTGTGTGTGTTTGCTTTAGGGAAGGA NC_000077.1[75436415..75436465]
1413_0566_1024 BLOCK1MM5000P08771978 chr11P92318405 AAACAGAAGCAGCAGTCTTCCCAGCATTTACAAGTAAGTCTTCAGTTCTC NC_000077.1[92318405..92318455]
1413_0568_1024 BLOCK1MM5000P08472813 chr11P43591110 GGCAACAGACAGTGCCTGAAGACAATTTTGATTGCCATGTTTCTAACTTT NC_000077.1[43591110..43591160]
1413_0570_1024 BLOCK1MM5000P08602033 chr11P64760707 ATAGGTGACTGACATATACTTGTTAGTGTGGGAGCACATGCACACATGTG NC_000077.1[64760707..64760757]
1413_0572_1024 BLOCK1MM5000P08445420 chr11P38701753 CTGTCGGTATACTCACACTTATTAAACACACATTGCTAATGGATGTGATC NC_000077.1[38701753..38701803]
1413_0574_1024 BLOCK1MM5000P08623560 chr11P67974072 CCATTTGGGGTCCTATTTCACTCCGAGGTGGCGTCCCACAATGGTGAGTC NC_000077.1[67974072..67974122]
1413_0576_1024 BLOCK1MM5000P08489981 chr11P46211981 CCATATGCCTGCCCCATCCTCAGTAGAACCCAAGAGGGACAGAATGGTTG NC_000077.1[46211981..46212031]
1413_0578_1024 BLOCK1MM5000P08550204 chr11P56541685 TTACCACTTTTTTTTAAATCTAATGTTTTCAAATGTTGTTTGTTTCCTTG NC_000077.1[56541685..56541735]
1413_0580_1024 BLOCK1MM5000P08764939 chr11P90983194 ATTTGTGTGTATATAATTACAGGGGGCTTTTACTTGGGGAAACTATTTTC NC_000077.1[90983194..90983244]

Total number of rows: 390619

Table truncated, full table size 51289 Kbytes.




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