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Platform GPL4964 Query DataSets for GPL4964
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 24 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 24.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 07, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186234, GSM186283, GSM186321, GSM186362, GSM186407
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1414_0321_0517 BLOCK1MM5000P09012713 chr12P11993770 AGATCCTAGATATTTCTTGAGATGGGGGCCTTCCTAGAGAAAATGTTTGT NC_000078.1[11993770..11993820]
1414_0139_0517 BLOCK1MM5000P09162513 chr12P37597555 TGAGTAATGTTTGCTAGTGTTCTTTTAACTTGGGACCCCAATTATGGCAC NC_000078.1[37597555..37597605]
1414_0141_0517 BLOCK1MM5000P09184629 chr12P41930956 GTCTAAGAATGCCACTTCCGCATGCTGAAGGGGAGTCCTTACTTCCTGTC NC_000078.1[41930956..41931006]
1414_0143_0517 BLOCK1MM5000P09065628 chr12P21396746 CTGGCTACACTGCTTCATAACTGACCATCATAATACATTACTCATCTTCT NC_000078.1[21396746..21396796]
1414_0145_0517 BLOCK1MM5000P08947271 chr11P119553861 CAGGCAAAAGCCCGGGGTCAGAAAGCAGGCTGGTGCTTGCCAGACTTGAC NC_000077.1[119553861..119553911]
1414_0147_0517 BLOCK1MM5000P08843446 chr11P103452557 CTGTGCCTAGTGGGAGACTGGAACTGATTCCGGGACAGAGTAGAGACCAT NC_000077.1[103452557..103452607]
1414_0149_0517 BLOCK1MM5000P08887575 chr11P110630579 TTCCCCCAGCCCCTGTCCTGGAAGGGTCAACTCAAGTAAGAGAAATATGA NC_000077.1[110630579..110630629]
1414_0151_0517 BLOCK1MM5000P08834964 chr11P102078227 CCAAGATTGCTGGCCCTCCCCCACACTGCCTGCCTGGGGCCAGAGAGGAC NC_000077.1[102078227..102078277]
1414_0153_0517 BLOCK1MM5000P08941721 chr11P118766944 TATGCCTGTGTTCTGACTCTCAGGGGTTGAAGGGTCGGTGAGGAAGCACC NC_000077.1[118766944..118766994]
1414_0155_0517 RANDOMRANDOM00004624 RANDOM_GC11_GC28P0 CCTTATGCGGTTATTCAGTAGAAACCAATCTCACATTACCATGAAGTCGA
1414_0157_0517 BLOCK1MM5000P08822322 chr11P100094482 AGAAAACGGAGGCCTGCGTTAGGGCTCAGCTTCAAACCTCACTGGAATTC NC_000077.1[100094482..100094532]
1414_0159_0517 BLOCK1MM5000P09077427 chr12P23326733 TGCTCATGCATTCTTGCCAAATTATATCTATCCAGCCTTGTACTTAGATC NC_000078.1[23326733..23326783]
1414_0161_0517 BLOCK1MM5000P08999737 chr12P9566638 CAGGGTCACTTAGAATTAATAATAGTGATAGTGACTATGTCTGTTATCCT NC_000078.1[9566638..9566688]
1414_0163_0517 BLOCK1MM5000P08989451 chr12P7920942 TCTGGTTTTTATGAGAGTGACAGTCGAGTCGTCTGTGTCTTTCCCATGTG NC_000078.1[7920942..7920992]
1414_0165_0517 BLOCK1MM5000P08907072 chr11P113560619 CTGTGTATGCACACACTTACCCCTTTACTATATTTCTAGTCATATGATGC NC_000077.1[113560619..113560669]
1414_0167_0517 BLOCK1MM5000P09003846 chr12P10337865 GCCGAGAAGGAATGACCCTGCCAAGGAGTGTCCCAATACTTCTGCTGAGA NC_000078.1[10337865..10337915]
1414_0169_0517 BLOCK1MM5000P08978074 chr12P5869706 TTATCTTCTAAGGAAAAAATTCAAAGGGTGCTTGTAAGGTTAATGACTTA NC_000078.1[5869706..5869756]
1414_0171_0517 BLOCK1MM5000P08850448 chr11P104601357 AGATTCAGGCCTTTTAGAAGAACCATCTCTCCAGCCACATGATTTCCTTC NC_000077.1[104601357..104601407]
1414_0173_0517 BLOCK1MM5000P08849795 chr11P104477340 TACCAGCTTTTAAGTTTTGACATATTATCATGTAGTGAAAGAGGAGGATC NC_000077.1[104477340..104477390]
1414_0175_0517 BLOCK1MM5000P08848174 chr11P104188650 CAGCCTAAAATTAAAGCACAAGTAAGTGAAAGTGTCCGTACAGGCTGGTG NC_000077.1[104188650..104188700]

Total number of rows: 390619

Table truncated, full table size 51579 Kbytes.




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