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Platform GPL4966 Query DataSets for GPL4966
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 26 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 26.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 07, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186236, GSM186285, GSM186323, GSM186364, GSM186409
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1416_0656_0490 BLOCK1MM5000P09964281 chr13P67225566 TTTAATATGAAATTCTGTTTTCAGTTTAAATGAAACTCTGTACAGTTTGA NC_000079.1[67225566..67225616]
1416_0474_0490 BLOCK1MM5000P09755005 chr13P32027558 ATTTAATTCTTAAAGACTCTATAAAATGCCTTACACTGTGCCCATAGGTA NC_000079.1[32027558..32027608]
1416_0476_0490 BLOCK1MM5000P09826035 chr13P43782828 TCCCTAAGCCCATAGTAGTTTGGAGCTTCCTTTAGCCATCAAACTGTAGA NC_000079.1[43782828..43782878]
1416_0478_0490 BLOCK1MM5000P09732237 chr13P28491158 ACACAGAGGGGGGGCAGGCAGACATACAGAGAGGAAAGAGGTGAGAAGAG NC_000079.1[28491158..28491208]
1416_0480_0490 BLOCK1MM5000P09705121 chr13P23427965 TTTGCCATACTTAGAAAGGGCTGGTGGTTCTTGGCTAAAGGGAGAAACAG NC_000079.1[23427965..23428015]
1416_0482_0490 BLOCK1MM5000P09782760 chr13P37071669 CATGTCCTCACCCTCTGTGTGTAGAGGTGTCTGTCACATGGCCCTGAGGA NC_000079.1[37071669..37071719]
1416_0484_0490 BLOCK1MM5000P09597809 chr12P115027304 AACATCTTGGATTCTCCATATTAAATCCCTCTGACAGGATGTAGAATGGG NC_000078.1[115027304..115027354]
1416_0486_0490 BLOCK1MM5000P09790371 chr13P38222684 GGTGGGCATGGGGGTTTGATCACAGTCGCATCCAAGGCTGTGCTCCTGAG NC_000079.1[38222684..38222734]
1416_0488_0490 BLOCK1MM5000P09766836 chr13P34327724 GTTTGTCTAGCAACCTCATGCTGGGTAAATGCTCTCGAGGAACTGCTAAT NC_000079.1[34327724..34327774]
1416_0490_0490 BLOCK1MM5000P09825127 chr13P43637029 AGCCCAGGCTAGCCTCAAACTCATGCTGTTATCAGAGTTTTTAGTGTCAG NC_000079.1[43637029..43637079]
1416_0492_0490 BLOCK1MM5000P09729666 chr13P28079746 GTTTGAACTTGCCCTTGGGATGATGCACCAATGAATGCAGCTCTTTCCTC NC_000079.1[28079746..28079796]
1416_0494_0490 BLOCK1MM5000P09810938 chr13P41494403 GAGCTAGAGACAGGTGTCTTGTAGTGTGAATTAAACAAGCGCCAGGGAGA NC_000079.1[41494403..41494453]
1416_0496_0490 BLOCK1MM5000P09733219 chr13P28675069 CAGTCTCCCTTTCTCTTAATCTGGCAGAGGGTTTCACAGTTCTGCTCATA NC_000079.1[28675069..28675119]
1416_0498_0490 BLOCK1MM5000P09591923 chr12P113823200 AGATATGATTATGGGAAATTCAACAAAGTAATAAATAGTTCCTAGTAAAT NC_000078.1[113823200..113823250]
1416_0500_0490 BLOCK1MM5000P09751172 chr13P31442719 AGAACCGAACACAGAAAGAACTCATGCACAGGTGCTTCAGACACAGGTTC NC_000079.1[31442719..31442769]
1416_0502_0490 BLOCK1MM5000P09817038 chr13P42369240 ATACCAACAAGGACACCAACCAGCTATTCATTACCTTTAAAAAGCTTAGA NC_000079.1[42369240..42369290]
1416_0504_0490 BLOCK1MM5000P09838837 chr13P45817467 GTTGGATTTGATTGTGTTTTCTCCCAGTTATCAGAGCAACTGAATGTTTT NC_000079.1[45817467..45817517]
1416_0506_0490 BLOCK1MM5000P09793056 chr13P38641813 CTTAGGCTCTGGGGTCCTCAGGTTAGCAGATTCCAGGTTCAAGGGACTCT NC_000079.1[38641813..38641863]
1416_0508_0490 BLOCK1MM5000P09753543 chr13P31799372 AGTTAGAAAGAGGCAGAGGGGAACAATGTCTGTACTCCAATGGGAACCCC NC_000079.1[31799372..31799422]
1416_0510_0490 BLOCK1MM5000P09836895 chr13P45457205 AGGCTGTTTTCTAGAAATAGCACATATTTGGGGAATATTTCTCTTTTCTC NC_000079.1[45457205..45457255]

Total number of rows: 390619

Table truncated, full table size 51223 Kbytes.




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