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Platform GPL4967 Query DataSets for GPL4967
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 27 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 27.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 07, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186237, GSM186286, GSM186324, GSM186365, GSM186410
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1417_0768_1024 BLOCK1MM5000P10195073 chr13P109102297 AAGGCTCCATTATTAAGAAGTTAGTGCTTGACAGCGGCCGACTCCACAGC NC_000079.1[109102297..109102347]
1417_0486_1024 BLOCK1MM5000P10074642 chr13P89043881 GTGTCTCTCCTGGCAGTAAGCTCACCCACCTCTTCTTCTGACTCTCCCCC NC_000079.1[89043881..89043931]
1417_0488_1024 BLOCK1MM5000P10198648 chr13P109654643 TCTTGAAAAACAACAAGAACCAAGAAAATAATGTGAGTGGCTAACTCGGA NC_000079.1[109654643..109654693]
1417_0490_1024 BLOCK1MM5000P10316236 chr14P17366271 CCTCCCTGTGGTTTTAATTGCCCATTTCACTCCAGGCCACTCCTCACTGG NC_000080.1[17366271..17366321]
1417_0492_1024 BLOCK1MM5000P10008302 chr13P75104098 TTATATTTCCATGTTTCTTATAATTAAGGAGAAATATACGTATGCTTAAA NC_000079.1[75104098..75104148]
1417_0494_1024 RANDOMRANDOM00002690 RANDOM_GC11_GC28P0 TTTGAGAGACTATTAGGATAATTAACGTACTGGCAAACGACCAATGATCG
1417_0496_1024 BLOCK1MM5000P10250194 chr14P5131340 AGGTTTTAATATAAGGACATTATCAGAAATGTCATCCCCAATAAATTGGG NC_000080.1[5131340..5131390]
1417_0498_1024 BLOCK1MM5000P10291004 chr14P12520572 AATGAGAAATAAATTTTGGAAAGTCAGATGTTTGCATGAAGTTAAAATGT NC_000080.1[12520572..12520622]
1417_0500_1024 BLOCK1MM5000P10281429 chr14P10393525 CATTTCAAAAGCATGCCTTCCTGCCTGCAACACAGCCCTAGAGAATAGCC NC_000080.1[10393525..10393575]
1417_0502_1024 BLOCK1MM5000P10005373 chr13P74486023 CCATTTTCAGTGTGGATACCAGTGAGGACAGTCATCACTAAGAGCTTCAG NC_000079.1[74486023..74486073]
1417_0504_1024 BLOCK1MM5000P10251591 chr14P5374748 ATCTAACGTGATTTAGAAAGACTAAAAGACACACCACAAAGTCCAACCTG NC_000080.1[5374748..5374798]
1417_0506_1024 BLOCK1MM5000P10196600 chr13P109333788 AGAGTACATTTGCATACGCCTGGCACAACTACATAAAAGTAGTATATAAA NC_000079.1[109333788..109333838]
1417_0508_1024 BLOCK1MM5000P10210913 chr13P111600366 TCCTACACAACATCGTCCCATCCTCTTTTTCTGTGTTGGATTCCATAATG NC_000079.1[111600366..111600416]
1417_0510_1024 BLOCK1MM5000P10045497 chr13P82706702 CCTTTTCTTTGCCCTCCTGAGCTTTAAGTTTTTAATCATACATTTCTCAG NC_000079.1[82706702..82706752]
1417_0512_1024 BLOCK1MM5000P10014255 chr13P76319072 CCACCCACAGAACCCCATGACTCTTTAAATACTTCCTTAAAGGTACCATT NC_000079.1[76319072..76319122]
1417_0514_1024 BLOCK1MM5000P10220419 chr13P113171480 ACATCTTGAGAGAAAAGACAGCACCAGGGTAGTCATGCAAATGGAACTGG NC_000079.1[113171480..113171530]
1417_0516_1024 BLOCK1MM5000P10290747 chr14P12442927 CACACTGAGATGTCACTAGTGTAGCTGTTTCTCAGAGGTTTTTATATTTT NC_000080.1[12442927..12442977]
1417_0518_1024 BLOCK1MM5000P10335930 chr14P20214888 GCTATTCTACAAAGGGGGTATTAAAGAAAAAGAACCTACAAAGTGGGGAT NC_000080.1[20214888..20214938]
1417_0520_1024 BLOCK1MM5000P10260036 chr14P6776699 TTCATTTTGCTGTTGATGGTTTATATATTTTGTTTTTAAATGAGACATAT NC_000080.1[6776699..6776749]
1417_0522_1024 RANDOMRANDOM00002270 RANDOM_GC11_GC28P0 ACGGAAATGCGCATCTCCTACTTGAATAAATTCGAACCGAAACCGAGGTG

Total number of rows: 390619

Table truncated, full table size 51458 Kbytes.




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