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Platform GPL4973 Query DataSets for GPL4973
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 32 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 32.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 08, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186242, GSM186291, GSM186330, GSM186371, GSM186416
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1422_0127_1009 BLOCK1MM5000P12247857 chr17P46529243 AGTAAGATTAGATAATTCCCAGAGTAAGATTATACGGCTGGATGAGGAAA NC_000083.1[46529243..46529293]
1422_0129_1009 BLOCK1MM5000P11988882 chr16P95295665 TAGTTCATATTGACATATAAAAACAAAATTTGACTTGGAAGTACATTGTA NC_000082.1[95295665..95295715]
1422_0131_1009 BLOCK1MM5000P12093773 chr17P16302996 CTATGTTGCCTTAGTCTAAGCCCCTATCCACAGAGGGTTCAAGGCAACTC NC_000083.1[16302996..16303046]
1422_0133_1009 BLOCK1MM5000P12153870 chr17P28453777 TTGATGGCCGGCACGCCCACTCCGTTCTCCGCCTTGCAGTAGTAGCGACC NC_000083.1[28453777..28453827]
1422_0135_1009 BLOCK1MM5000P11956006 chr16P90055263 ATCTGAGACTCGCAAGCTAGCATTTATAACCACACACATGTATTATTCAC NC_000082.1[90055263..90055313]
1422_0137_1009 BLOCK1MM5000P12146161 chr17P27171097 ATGGCCTAGGATCCAACCCCAGGGCTATGGTGATGACTGTTCCCAGATCT NC_000083.1[27171097..27171147]
1422_0139_1009 BLOCK1MM5000P11944325 chr16P88155905 TTTACATCAGGAGACAGTGGGTTAGAGATGGTAGAATCCTTGAGGCTCTG NC_000082.1[88155905..88155955]
1422_0141_1009 BLOCK1MM5000P12085215 chr17P14439537 ATAACAACAACAACAAATCAGACTAAATAAAAGATAGAAAGTGTGTGTGT NC_000083.1[14439537..14439587]
1422_0143_1009 BLOCK1MM5000P12126735 chr17P24247293 TCTGCCGTCCCCGAGCCTCACCCACTCCAGGCCGGTCATCTGCAGAGCGC NC_000083.1[24247293..24247343]
1422_0145_1009 BLOCK1MM5000P12118498 chr17P23128342 CCTGTAGGTTCAGCAGTGTGGACCCCAATAGCATGGATGCCCAGCTTCTC NC_000083.1[23128342..23128392]
1422_0147_1009 BLOCK1MM5000P12229268 chr17P43400294 ATTTTAACTGCTTTATAGAAATCTTCCTAAAACATACGAGGCTTTCCTGC NC_000083.1[43400294..43400344]
1422_0149_1009 BLOCK1MM5000P12082133 chr17P13972505 AAGCCCTAACACAGACACGATTGGTGAGTGACAGAGCCCTGCTGCACCCA NC_000083.1[13972505..13972555]
1422_0151_1009 BLOCK1MM5000P11906187 chr16P81022765 TTAGCTCTTAAAAAGCATCAGGCATGTAATTAAATTTCTGTCACATGATA NC_000082.1[81022765..81022815]
1422_0153_1009 BLOCK1MM5000P12208903 chr17P39881490 CCAAAGTCTCCTTCATATTGTGATCTTCCAGCCTTAATTCATTATCAAAC NC_000083.1[39881490..39881540]
1422_0155_1009 BLOCK1MM5000P12043917 chr17P8178049 CATCCCAGTGTTGGCAGTACCCGTCTACTTCCCTATGCTCATACGCCCAC NC_000083.1[8178049..8178099]
1422_0157_1009 BLOCK1MM5000P12012285 chr17P3261002 CTGAACACATTACTTCAAAAGCCACGCCCATAGGCAGTCAGTACTTAGCT NC_000083.1[3261002..3261052]
1422_0159_1009 BLOCK1MM5000P12190061 chr17P34786229 CTCTCTCTCCTTCCTGCAACAGTTGGCATTCAACATATTTGCGTGTATTT NC_000083.1[34786229..34786279]
1422_0161_1009 BLOCK1MM5000P11941981 chr16P87774478 CCAAACTATAATTTCAATGAATGAAAGTGTTATCCATGTATAATATTGTC NC_000082.1[87774478..87774528]
1422_0163_1009 BLOCK1MM5000P11979405 chr16P93559543 ACAAACATGCCCGGTGCTCAAAGGTGAAGTATGTGGTTAGCAACACATCC NC_000082.1[93559543..93559593]
1422_0165_1009 BLOCK1MM5000P12198410 chr17P36613249 TAAAGTGGAGATAGAGTATTCTGTCCTATTATGTTTTCTTCTGTAAATAC NC_000083.1[36613249..36613299]

Total number of rows: 390619

Table truncated, full table size 51154 Kbytes.




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