NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL4976 Query DataSets for GPL4976
Status Public on Mar 20, 2007
Title Nimblegen 14.4M Mouse Tiling array of mm5 at 100bp resolution v1.0 set 35 of 37
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Whole mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 37 genome scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 14,375,432 50-mer oligonucleotides, positioned at every 100 basepairs (bp) throughout the human genome as described in the oligonucleotide array description files. There are a total of 37 arrays. This is set 35.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 08, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (5) GSM186245, GSM186294, GSM186333, GSM186374, GSM186419
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID CONTAINER PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC MM5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
1425_0233_0959 BLOCK1MM5000P13187897 chr19P32226893 ATTCTTGTCCTGTGCGGGGACTATCTGCCAGGAAGGTTAAGATGTATAGG NC_000085.1[32226893..32226943]
1425_0235_0959 BLOCK1MM5000P13250180 chr19P43411579 AAACTATCAGCTTACTGAAAAAAATGTATTGCTGAAGCAAAGGGGTACAT NC_000085.1[43411579..43411629]
1425_0237_0959 BLOCK1MM5000P13074544 chr19P13945015 CATTGCCTTCTTTTAACCTCAGAAGCACATTTGCTTACAGTTATGTTGAC NC_000085.1[13945015..13945065]
1425_0239_0959 BLOCK1MM5000P13207070 chr19P35818235 CTGGCTTCTCAGTTCTTACAAACACATAATGGTCTGCTTTGTTAGATTCT NC_000085.1[35818235..35818285]
1425_0241_0959 BLOCK1MM5000P13311052 chr19P53302360 GTTTCACATTGTACCCTGCACTGAGTGTAGAGGTTCCAGTTGTAAGAAAC NC_000085.1[53302360..53302410]
1425_0243_0959 BLOCK1MM5000P13385717 chrXP8922454 AACTTAATTATTTGTGTATTCAACTGCTCATCTCTTCATCTCTATTCACC NC_000086.1[8922454..8922504]
1425_0245_0959 BLOCK1MM5000P13262772 chr19P45375155 AAAGGCTATCATCAAACCCATCTCTCTAAGCACAGCACAGTCCCTCAAGC NC_000085.1[45375155..45375205]
1425_0247_0959 BLOCK1MM5000P13049624 chr19P9086173 TCCTACACTTCCCAGGGAGTCCATCAAGGCCCAATTTACCTTAGATTCTC NC_000085.1[9086173..9086223]
1425_0249_0959 BLOCK1MM5000P13304619 chr19P52302466 TGCCAACATACTAGGTCTGTGTTTACAGTCGACACTACAAGGAATAGCCT NC_000085.1[52302466..52302516]
1425_0251_0959 BLOCK1MM5000P13226368 chr19P39767869 CGTTTTGAACTAGAAAAAAAAATGCACTTGCTTTTTTCAAACATGACACC NC_000085.1[39767869..39767919]
1425_0253_0959 BLOCK1MM5000P13215612 chr19P37195932 ATTAGAAATTGAACCCAGTACTTTTTATTCTGTAGATAACACACTCTAAT NC_000085.1[37195932..37195982]
1425_0255_0959 BLOCK1MM5000P13073004 chr19P13736338 AAAACAAAACAAAGCAACCTCTTGTATATTTATTACCAGAAAAGCTAAGT NC_000085.1[13736338..13736388]
1425_0257_0959 BLOCK1MM5000P13341493 chr19P57785270 TTTCCATACACTGTATACTGCTCCCCCCGCACCTACTGCTCACAGCTGAA NC_000085.1[57785270..57785320]
1425_0259_0959 BLOCK1MM5000P13230721 chr19P40398348 TCATCCCTGGGCACAGCTGATTGAAGATGTTCAAATGTGTTTATCTAAGA NC_000085.1[40398348..40398398]
1425_0261_0959 BLOCK1MM5000P13305035 chr19P52372040 AGATCAAGTGCACTCCTATATATAGGCTGGTGTGACTGGGCTATGTGGAT NC_000085.1[52372040..52372090]
1425_0263_0959 BLOCK1MM5000P13039056 chr19P6684964 CCTCTTCCTCTTTGGATGCTTTCTTCCAGCCCTGGAATGGTAATAGAGTT NC_000085.1[6684964..6685014]
1425_0265_0959 BLOCK1MM5000P13206654 chr19P35745458 TATGTCCAGCCTCTGGAGCACATGGGGCCATTATATAAGTCTCAGTGGCC NC_000085.1[35745458..35745508]
1425_0267_0959 BLOCK1MM5000P13054231 chr19P9739666 GAAAAATGTCAAGAAAAGGGAGAAGAAATACATTCATTCCCAGGGACTGA NC_000085.1[9739666..9739716]
1425_0269_0959 BLOCK1MM5000P13327865 chr19P55809011 ACAGTTGATAGCACAAGGCCCGGTGCCCTCAAGGTCCTGAACGGAGCCCT NC_000085.1[55809011..55809061]
1425_0271_0959 BLOCK1MM5000P13263514 chr19P45508540 AAGTAATCAAATTCATTCAAATTAGGTTAGTTATTGATAATACATAAAGT NC_000085.1[45508540..45508590]

Total number of rows: 390619

Table truncated, full table size 51070 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap