GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Platform GPL5008 Query DataSets for GPL5008
Status Public on Mar 19, 2007
Title Affymetrix GeneChip Mouse Genome 430 2.0 Array [CDF: Mm_ENTREZG_8]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol This identical to GPL1261 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below.
Description CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan.
After probe sequences are BLASTed against the latest UniGene Build and genome sequence, a series of filtering and grouping criteria are applied for different CDF files. For the CDF file based on Entrez Gene:
A probe must hit only one genomic location;
Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set;
Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon;
For detailed description please see the paper.
Web link
Citation(s) 16284200
Submission date Mar 16, 2007
Last update date Jun 08, 2007
Contact name Robert Ivanek
Phone +41 61 207 35 41
Organization name University of Basel
Department Department of Biomedicine
Lab Bioinformatics
Street address Hebelstrasse 20
City Basel
ZIP/Postal code 4053
Country Switzerland
Samples (21) GSM176187, GSM176188, GSM176189, GSM176190, GSM176191, GSM176192 
Series (2)
GSE7306 Chromosomal rearrangement interferes with meiotic X-chromosome inactivation
GSE11295 PPARĪ³ activation promotes infiltration of alternatively activated macrophages into adipose tissue.
Alternative to GPL1261 (Alternative CDF [official])

Data table header descriptions
ORF EntrezGeneId
SPOT_ID control probes

Data table
ID ORF Description SPOT_ID
100012_at 100012 oogenesin 3
100017_at 100017 low density lipoprotein receptor adaptor protein 1
100019_at 100019 midasin homolog (yeast)
100061_at 100061 leucine rich repeat containing 19
100066_at 100066 cytochrome P450, family 2, subfamily j, polypeptide 11
100072_at 100072 calmodulin binding transcription activator 1
100087_at 100087 KTI12 homolog, chromatin associated (S. cerevisiae)
100088_at 100088 regulator of chromosome condensation 1
100090_at 100090 GLI-Kruppel family member HKR3
100102_at 100102 proprotein convertase subtilisin/kexin type 9
100121_at 100121 tudor domain containing 7
100129_at 100129 G protein-coupled receptor 153
100163_at 100163 platelet-activating factor acetylhydrolase 2
100169_at 100169 phosphatase and actin regulator 4
100177_at 100177 zinc finger, MYM-type 6
100198_at 100198 hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
100201_at 100201 transmembrane protein 64
100206_at 100206 ADP-ribosylhydrolase like 2
100210_at 100210 ATP binding domain 1 family, member B
100213_at 100213 RUN and SH3 domain containing 2

Total number of rows: 16642

Table truncated, full table size 835 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL5008_Mm_ENTREZG_8.cdf.gz 7.1 Mb (ftp)(http) CDF

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap