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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 13, 2007 |
| Title |
[Hs_PromPR] Affymetrix Human Promoter 1.0R Array |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
see manufacturer's web site
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| Catalog number |
900775 |
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| Description |
The GeneChip® Human Promoter 1.0R Array is designed for chromatin immunoprecipitation (ChIP) experiments. The Human Promoter Array is a single array comprised of over 4.6 million probes tiled through over 25,500 human promoter regions. Sequences used in the design of the Human Promoter array were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Promoter regions were selected using sequence information from:
35,685 ENSEMBL genes (version 21_34d, May 14, 2004)
25,172 RefSeq mRNAs (NCBI GenBank®, February 7, 2004)
47,062 complete-CDS mRNA (NCBI GenBank, December 15, 2003)
Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. Each promoter region covers approximately 7.5 kb upstream through 2.45 kb downstream of 5' transcription start sites. For over 1,300 cancer-associated genes, coverage of promoter regions was expanded to include additional genomic content. This more extensive coverage spans from 10 kb upstream through 2.45 kb downstream of transcriptional start sites.
The array interrogates regions proximal to transcription start sites and contains probes for approximately 59 percent of CpG islands annotated by UCSC in NCBI human genome assembly (Build 34). The probes selected for the Human Promoter 1.0R Array are a subset of the probes used in the whole-genome ChIP array set, the GeneChip® Human Tiling 2.0R Array Set (P/N 900772).
BPMAP and other files can be downloaded from the Affymetrix Web site below.
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| Web link |
http://www.affymetrix.com/products/arrays/specific/human_promoter.affx
http://www.affymetrix.com/support/technical/libraryfileupdatesmain.affx
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| Submission date |
Apr 13, 2007 |
| Last update date |
Jan 21, 2015 |
| Organization |
Affymetrix, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov, support@affymetrix.com
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| Phone |
888-362-2447
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| URL |
http://www.affymetrix.com/index.affx
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| Street address |
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| City |
Santa Clara |
| State/province |
CA |
| ZIP/Postal code |
95051 |
| Country |
USA |
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| Samples (1078)
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GSM182106, GSM182107, GSM182108, GSM182109, GSM182110, GSM182111
GSM182112, GSM182113, GSM182114, GSM182115, GSM182116, GSM182117, GSM182118, GSM182119, GSM182120, GSM182121, GSM182122, GSM182123, GSM182124, GSM182125, GSM182126, GSM182127, GSM182128, GSM182129, GSM182130, GSM182131, GSM182132, GSM182133, GSM182134, GSM182135, GSM264618, GSM264619, GSM264620, GSM264621, GSM264622, GSM264623, GSM287993, GSM287994, GSM287995, GSM287996, GSM287997, GSM287998, GSM287999, GSM288000, GSM288001, GSM288002, GSM288003, GSM288004, GSM305610, GSM305611, GSM305612, GSM305613, GSM305614, GSM305615, GSM310413, GSM310414, GSM310415, GSM322671, GSM322672, GSM322673, GSM322674, GSM322675, GSM322676, GSM322677, GSM322678, GSM322679, GSM322680, GSM322681, GSM322682, GSM322683, GSM322684, GSM322685, GSM322686, GSM322687, GSM322688, GSM322689, GSM322690, GSM364911, GSM364912, GSM364913, GSM364914, GSM375492, GSM375493, GSM375494, GSM375495, GSM375496, GSM375497, GSM402515, GSM402516, GSM402517, GSM402518, GSM427060, GSM427061, GSM427062, GSM427063, GSM428654, GSM428655, GSM428656, GSM428657, GSM428658, GSM428659, GSM428660, GSM428661, GSM428662, GSM428663, GSM428664, GSM428665, GSM428666, GSM428667, GSM428668, GSM428669, GSM428670, GSM428671, GSM428672, GSM428673, GSM428674, GSM428675, GSM428676, GSM428677, GSM428678, GSM428679, GSM428681, GSM428682, GSM428683, GSM428684, GSM428685, GSM428686, GSM428687, GSM431433, GSM431434, GSM431435, GSM431436, GSM431437, GSM431438, GSM431439, GSM431440, GSM431441, GSM431442, GSM431443, GSM456559, GSM456560, GSM456561, GSM456562, GSM456563, GSM456564, GSM461098, GSM461099, GSM461100, GSM461101, GSM461102, GSM464480, GSM464481, GSM464482, GSM464483, GSM464484, GSM464485, GSM464486, GSM464487, GSM464488, GSM464489, GSM464490, GSM464491, GSM475999, GSM488984, GSM488985, GSM488986, GSM488987, GSM488988, GSM488989, GSM488990, GSM488991, GSM488992, GSM488993, GSM531270, GSM531271, GSM531272, GSM531273, GSM531274, GSM531275, GSM595880, GSM595881, GSM595882, GSM595883, GSM595884, GSM595885, GSM605926, GSM605927, GSM605928, GSM605929, GSM605930, GSM605931, GSM605932, GSM605933, GSM605934, GSM605935, GSM605936, GSM605937, GSM605938, GSM605939, GSM605940, GSM605941, GSM605942, GSM605943, GSM605944, GSM605945, GSM605946, GSM605947, GSM605948, GSM605949, GSM605950, GSM605951, GSM605952, GSM605953, GSM605954, GSM605955, GSM605956, GSM611218, GSM636791, GSM636792, GSM636793, GSM636794, GSM636795, GSM636796, GSM636797, GSM636798, GSM637567, GSM637568, GSM640144, GSM640145, GSM640146, GSM640147, GSM640148, GSM640149, GSM640150, GSM640151, GSM640152, GSM640153, GSM640154, GSM640155, GSM640156, GSM640157, GSM640158, GSM640159, GSM641862, GSM688031, GSM688032, GSM688033, GSM688034, GSM688035, GSM688036, GSM694179, GSM694180, GSM694181, GSM713225, GSM713226, GSM738220, GSM791773, GSM791774, GSM791775, GSM794152, GSM828195, GSM828196, GSM828197, GSM828198, GSM828199, GSM828200, GSM828201, GSM828202, GSM828203, GSM828204, GSM828205, GSM828206, GSM828207, GSM828208, GSM828209, GSM828210, GSM828211, GSM828212, GSM828213, GSM828214, GSM828215, GSM828216, GSM828217, GSM828218, GSM828219, GSM828220, GSM828221, GSM828222, GSM828223, GSM828224, GSM828225, GSM828226, GSM828227, GSM828228, GSM846126, GSM846127, GSM846128, GSM846129, GSM846130, GSM846131, GSM846132, GSM846133, GSM846134, GSM846135, GSM846136, GSM846137, GSM846138, GSM846139, GSM846140, GSM846141, GSM846142, GSM846143, GSM846144, GSM846145, GSM846146, GSM846147, GSM846148, GSM846149, GSM914954, GSM914955, GSM914956, GSM914957, GSM966557, GSM966558, GSM972734, GSM972735, GSM978997, GSM978998, GSM993948, GSM993949, GSM993950, GSM997985, GSM1099701, GSM1099702, GSM1113670, GSM1309131, GSM1309132, GSM1309133, GSM1309134, GSM1309135, GSM1309136, GSM1309137, GSM1309138, GSM1309139, GSM1309140, GSM1309141, GSM1309142, GSM1309143, GSM1309144, GSM1309145, GSM1309146, GSM1309147, GSM1309148, GSM1309149, GSM1309150, GSM1309151, GSM1309152, GSM1395344, GSM1395345, GSM1395346, GSM1395347, GSM1395348, GSM1395349, GSM1395350, GSM1395351, GSM1395352, GSM1395353, GSM1395354, GSM1395355, GSM1400097, GSM1400098, GSM1400099, GSM1400100, GSM1400101, GSM1400102, GSM1400103, GSM1400104, GSM1400105, GSM1401405, GSM1401406, GSM1401407, GSM1401408, GSM1412625, GSM1412626, GSM1412627, GSM1412628, GSM1412629, GSM1412630, GSM1412631, GSM1412632, GSM1412633, GSM1412634, GSM1412635, GSM1412636, GSM1412637, GSM1412638, GSM1412639, GSM1412640, GSM1412641, GSM1412642, GSM1412643, GSM1412644, GSM1412645, GSM1412646, GSM1412647, GSM1412648, GSM1412649, GSM1412650, GSM1412651, GSM1412652, GSM1412653, GSM1412654, GSM1412655, GSM1412656, GSM1412657, GSM1412658, GSM1412659, GSM1412660, GSM1412661, GSM1412662, GSM1412663, GSM1412664, GSM1412665, GSM1412666, GSM1412667, GSM1412668, GSM1412669, GSM1412670, GSM1421282, GSM1421283, GSM1421284, GSM1421285, GSM1421286, GSM1421287, GSM1421288, GSM1421289, GSM1421290, GSM1421291, GSM1421292, GSM1421293, GSM1421294, GSM1421295, GSM1421296, GSM1421297, GSM1421298, GSM1421299, GSM1421300, GSM1421301, GSM1421302, GSM1421303, GSM1421304, GSM1421305, GSM1421306, GSM1421307, GSM1421308, GSM1421309, GSM1421310, GSM1421311, GSM1435071, GSM1435072, GSM1435073, GSM1435074, GSM1435075, GSM1435076, GSM1435077, GSM1435078, GSM1439024, GSM1439025, GSM1439026, GSM1439027, GSM1439028, GSM1439029, GSM1439030, GSM1439031, GSM1439032, GSM1439033, GSM1439034, GSM1439035, GSM1439036, GSM1439037, GSM1439038, GSM1439039, GSM1439040, GSM1439041, GSM1544196, GSM1544197, GSM1544198, GSM1544199, GSM1544200, GSM1544201, GSM1544202, GSM1544203, GSM1603234, GSM1603235, GSM1603236, GSM1603237, GSM1603238, GSM1603239, GSM1603240, GSM1603241...
Accession list truncated, click here to browse through all related public accessions
You can also download a list of all accessions here
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| Series (88)
|
| GSE7516 |
ChIP-chip analysis of human DREAM complex subunits in G0-arrested and S-phase synchronized cells |
| GSE10453 |
ChIP-chip from HCT116 cells with UbH2B and H3K4me2 coupled to expression analysis |
| GSE11413 |
Me-DIP-chip data from osteosarcoma cell lines |
| GSE11416 |
Comparison of osteosarcoma cell lines and normal human osteoblasts |
| GSE12122 |
Epigenetic mapping and functional analysis in a breast cancer metastasis model using whole genome tiling arrays |
| GSE12360 |
Genome-wide analysis of H3K79 methylation in CD34+ CD19+ cells from normal marrow, MLL-rearranged or MLL-germline ALL |
| GSE12363 |
H3K79 methylation profiles define murine and human MLL-AF4 leukemias |
| GSE12864 |
Me-DIP-chip data from osteosarcoma tumours |
| GSE12885 |
Genome-wide changes in DNA methylation and copy number play a role in deregulation of gene expression in osteosarcoma |
| GSE14526 |
Epigenotyping by quantitative DNA methylation analysis revealed three epigenotypes in colorectal cancer |
| GSE15014 |
Comprehensive DNA methylation analysis of neuronal and non-neuronal nuclei in the human brain |
| GSE15619 |
Epigenetic signature of breast cancer and its association with gene expression and copy number |
| GSE16079 |
Promoter methylation profiles for ectopic vs. eutopic endometrium in SUP, VES and OME |
| GSE17125 |
DNA methylome of familial breast cancer identifies distinct profiles defined by mutation status |
| GSE17224 |
DNA methylation of developmental genes in pediatric medulloblastomas identified by DAMD |
| GSE18284 |
Genomic binding sites of non-metastatic 2 (NME2) across promoters in lung cancer A549 cells |
| GSE18285 |
Characterization of the transcriptional roles of NME2 |
| GSE18499 |
Genome-wide HIF-1, RNA polII, and H3K4me3 binding sites in U87 and HepG2 cells |
| GSE18505 |
HepG2 hepatoma and U87 glioma cells: transcriptomic and genomic analyses |
| GSE18706 |
Sub-populations of c-Myb in MCF-7 cells |
| GSE19202 |
Genome-wide recognition of PML/RARa binding sites |
| GSE19203 |
PML-RARa binding sites and their correlation with the gene expression in ATRA treated NB4 cells |
| GSE19600 |
MeDIP and ChIP-on-chip data from normal Prostate epithelial cells (PrEC) and the LNCaP cancer cell line |
| GSE19726 |
Expression, MeDIP and ChIP-on-chip data from normal Prostate epithelial cells (PrEC) and the LNCaP cancer cell line |
| GSE21253 |
Classical Hodgkin lymphoma shows epigenetic features of an abortive plasma cellular differentiation: acetyl H3 K9/14 ChIP-chip |
| GSE21254 |
Classical Hodgkin lymphoma shows epigenetic features of an abortive plasma cellular differentiation |
| GSE24224 |
Analysis of genome-wide methylation and gene expression induced by decitabine treatment in HL60 leukemia cell line |
| GSE24546 |
Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias and copy number variation |
| GSE24844 |
LSD1/KDM1 regulates the balance between self-renewal and differentiation in human embryonic stem cells. |
| GSE25914 |
ChIP-on-chip of H2A variants and H3 from normal Prostate epithelial cells (PrEC) and the LNCaP cancer cell line |
| GSE25943 |
Genome-Wide STAT3 binding sites in DU145 prostate cancer cells coupled to expression analysis |
| GSE25944 |
Role of STAT3 in DU145 prostate cancer cell line |
| GSE26073 |
DNA methylation patterns associated with arsenicosis |
| GSE26144 |
Genome-wide SF-1 (NR5A1) binding sites in NCI-H295R cells |
| GSE27865 |
Bisphenol A Induced the Expression of DNA Repair Genes in Human Breast Epithelial Cells (methylation data) |
| GSE28797 |
Smad2/3 binding sites in HaCaT, HepG2, and Hep3B cells determined by an Affymetrix promoter array |
| GSE28798 |
Cell-type-specific target selection by combinatorial binding of Smad2/3 and hepatocyte nuclear factor 4-alpha in HepG2 cells |
| GSE31964 |
MYC binding in human B cells (P493-6) and ESC (H9) |
| GSE32027 |
Genome-wide AID target loci in BL2 cells |
| GSE32160 |
Bisphenol A Regulates the Expression of DNA Repair Genes in Human Breast Epithelial Cells |
| GSE32220 |
Cell-type independent MYC target genes reveal a primordial signature involved in biomass accumulation |
| GSE33477 |
Analysis of genome-wide methylation of phenotypically discordant monozygotic twins |
| GSE33478 |
Genome-wide DNA methylation and gene expression analyses of monozygotic twin discordant for intelligence levels |
| GSE34271 |
Smad3 ChIP-chip analysis on human breast epithelial cells of the MCF10A series |
| GSE34277 |
MCF10A-based xenograft model of breast cancer |
| GSE37252 |
FOXP3 binding sites in promoter regions of human Jurkat T cells |
| GSE37256 |
Role of FOXP3 in human Jurkat T cells |
| GSE39357 |
ETV1 and ERG genome binding/occupancy profiling by genome tiling array |
| GSE39388 |
Distinct transcriptional programs controlled by ERG and ETV1 in prostate cells |
| GSE39593 |
Mapping of EZH2-WT and EZH2-mTP5 binding sites to human promoter regions |
| GSE39783 |
Estrogen deprivation alters epigenetic modifications in breast cancer cells - HOXC10 loss in endocrine resistance |
| GSE40363 |
Nucleosome positioning in A549 cells before/after NME2 induction |
| GSE40433 |
A549 cells before/after NME2 induction |
| GSE40618 |
IL-2 induced gene expression changes in Kit225 human leukemia cell lines |
| GSE40619 |
Genome-Wide STAT5 binding sites in Kit225 leukemia cells |
| GSE40624 |
Genome-wide mapping of IL-2 regulated target genes and IL-2 activated STAT5 binding sites in Kit225 human leukemia cells. |
| GSE45240 |
Fundamental differences in promoter CpG island DNA hypermethylation between human cancer and genetically engineered mouse models of cancer [Methylation profiling by array] |
| GSE45342 |
Fundamental differences in promoter CpG island DNA hypermethylation between human cancer and genetically engineered mouse models of cancer |
| GSE45756 |
Genome-wide Identification of Transcriptional Targets of RORA Reveals Direct Regulation of Multiple Genes Associated with Autism Spectrum Disorder |
| GSE48196 |
TRIM37 is a novel H2A ubiquitin ligase and a Breast Cancer Oncogene |
| GSE54170 |
Mapping and characterization of promoter-binding sites of protein phosphatase 1 |
| GSE57870 |
ETV5 transcription program links BDNF and promotion of EMT at invasive front of endometrial carcinomas. |
| GSE58050 |
Genome-wide analysis in Human Colorectal Cells reveals Ischaemia-mediated expression of motility genes via DNA hypomethylation (promoter array) |
| GSE58125 |
HUES cells: control and overexpressing OCT4 |
| GSE58233 |
Genome-wide analysis in Human Colorectal Cells reveals Ischaemia-mediated expression of motility genes via DNA hypomethylation |
| GSE58499 |
Arsenic-Associated Differential DNA Methylation in Human Uroepithelial Cells |
| GSE58880 |
Coordinated epigenetic remodelling occurs during early breast carcinogenesis [Human promoter ChIP-chip] |
| GSE58882 |
Coordinated epigenetic remodelling occurs during early breast carcinogenesis |
| GSE59328 |
Genome wide analysis of bivalent domains in two HUES cell lines |
| GSE63235 |
Dynamics of MBD2 deposition across methylated DNA regions during malignant transformation of human mammary epithelial cells (3) |
| GSE63237 |
Dynamics of MBD2 deposition across methylated DNA regions during malignant transformation of human mammary epithelial cells |
| GSE65690 |
RelA Nuclear factor-kappaB (NF-kB) Subunit binding Loci in Promoter Regions of PHM1-31 Myometrial Smooth Muscle Cells (Promoter) |
| GSE65721 |
RelA Nuclear factor-kappaB (NF-kB) Subunit binding Loci in Promoter Regions of PHM1-31 Myometrial Smooth Muscle Cells |
| GSE67976 |
CpG island methylation data from maternal venous blood and infant cord blood samples |
| GSE72257 |
Sorafenib induces variations of the DNA methylome in human hepatocellular carcinoma cells. |
| GSE73053 |
DNA methylation profiling of blood monocytes in obstructive sleep apnea (OSA) patients: Effect of positive airway pressure (PAP) treatment. |
| GSE81868 |
DNA methylation profiling of promoter DNA associated to the T2D patients in Taiwan |
| GSE99935 |
Genome-wide DNA methylation profiles of lymphoblastoid cell lines from sex-matched sibling pairs discordant for autism diagnosis |
| GSE121820 |
DNA methylation profiles in Taiwanese patients of Type-2 Diabetes (T2D) associated to Nephropathy (DN) and Retinopathy (DR) |
| GSE126154 |
Transcriptional changes associated with overexpression of TBX3 isoforms (TBX3iso1 and TBX3iso2) in the DCIS-like 21NT cell line (ChIP) |
| GSE126156 |
Transcriptional changes associated with overexpression of TBX3 isoforms (TBX3iso1 and TBX3iso2) in the DCIS-like 21NT cell line |
| GSE137254 |
Promoter-wide profiling of DNA methylation in human neuroblastoma cells cultured with mood stabilizers. |
| GSE137259 |
Promoter-wide profiling of DNA hydroxymethylation in prefrontal cortex of healthy controls |
| GSE137723 |
Promoter-wide profiling of DNA methylation in profrontal cortex with patients with bipolar disorder |
| GSE137921 |
Promoter-wide profiling of DNA methylation changes in bipolar disorder |
| GSE153636 |
DNA methylation variations in familial female and male breast cancer |
| GSE158894 |
To identify GCM1 novel target genes by chromatin immunoprecipitation-on-chip (ChIP-chip) analysis |
| GSE189007 |
Gene-expression profiles of whole blood cells from a Han Chinese population with or without Type-2 Diabetes Mellitus or/and its complications in nephropathy and retinopathy |
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| Supplementary data files not provided |
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