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Status
Public on May 30, 2007
Title
Rice 44K
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Oryza sativa Manufacturer
Agillent
Manufacture protocol
Probe Length: 60 bases
Support
glass
Contributor(s)
Shimono M , Nakayama A , Takatsuji H Submission date
Apr 18, 2007
Last update date
May 29, 2012
Contact name
Hiroshi Takatsuji
E-mail(s)
takatsuh@affrc.go.jp Organization name
National Institute of Agrobiological Sciences
Department
Division of Plant Sciences
Lab
Plant Disease Resistance Research Unit
Street address
2-1-2 Kannondai
City
Tsukuba
State/province
Ibaraki
ZIP/Postal code
305-8602
Country
Japan
Samples (32)
GSM183474 , GSM183475 , GSM183476 , GSM183477 , GSM183478 , GSM183479
GSM183480 ,
GSM183481 ,
GSM404358 ,
GSM404359 ,
GSM404360 ,
GSM404361 ,
GSM404362 ,
GSM404363 ,
GSM404364 ,
GSM404365 ,
GSM404366 ,
GSM404367 ,
GSM404368 ,
GSM404369 ,
GSM404370 ,
GSM404371 ,
GSM404372 ,
GSM404373 ,
GSM404374 ,
GSM404375 ,
GSM404376 ,
GSM404377 ,
GSM404378 ,
GSM404379 ,
GSM404380 ,
GSM404381 Series (2)
Relations Alternative to
GPL10843
Data table header descriptions ID FeatureNum serial number
Row row
Col column
SEQUENCE probe sequence
ControlType control type
ProbeName Locus ID
ORF GB_ACC GenBank Accession number
miRNA_ID microRNAs
SPOT_ID GeneName Biosequence type
Description coding sequence (CDS) or untranslated region (UTR)
gSurrogateUsed Biological annotation
Data table ID FeatureNum Row Col SEQUENCE ControlType ProbeName ORF GB_ACC miRNA_ID SPOT_ID GeneName Description gSurrogateUsed GE_BrightCorner
1
1
1
1
GE_BrightCorner
GE_BrightCorner
GE_BrightCorner
0
DarkCorner
2
1
2
1
DarkCorner
DarkCorner
DarkCorner
3.74478
AJ491820
12
1
12
ACAAGCGCACGAACTAGGTGATGATGATCAGAAGCGATCAGTATGCGATCGATGTTCTGC
0
Os01g0532600
Os01g0532600 AJ491820 mRNA
CDS+3'UTR
HKT1.
CI557169
13
1
13
GCCCCTTTATATCTTTGTAGTTTGTAATAAGCCTGCTAAATTCTCAATGTTCATGTGTTC
0
Os01g0721700
Os01g0721700 CI557169 COMBINER_EST
4
Conserved hypothetical protein.
AK104039
14
1
14
GATATTTGATTAGTTATGCATCCAAATATATTGGGATTAATAAACGCAGATGTATTCACA
0
Os06g0215600
Os06g0215600 AK104039 mRNA
CDS+3'UTR
Oxo-phytodienoic acid reductase (12-oxophytodienoic acid reductase).
AK069390
15
1
15
GAAATTAGAATGGGCGACAAATTTAGGGACCTCAAGTAAACTTATTCCAAGGCAAAAACA
0
Os09g0379500
Os09g0379500 AK069390 mRNA
CDS+3'UTR
Conserved hypothetical protein.
AK069890
16
1
16
ATTACTGACTTTATTTATCACCTGTCCTGATCTCCATAGTTTATCAATGTGTTTGGCGTT
0
Os03g0199100
Os03g0199100 AK069890 mRNA
CDS+3'UTR
Protein of unknown function DUF677 family protein.
AK120501
17
1
17
ATATTTGTGACCAGATGAATTATATATTTGTACACAGATGAATTATATATTTGTGACCAG
0
Os01g0508500
Os01g0508500 AK120501 mRNA
CDS+3'UTR
Hypothetical protein.
AK064427
18
1
18
TGGACGTTTACTCATCCGCATGGCCCATTTAGCGCCCCCATTTGCGATTTTTCGCAGCAT
0
Os06g0130000
Os06g0130000 AK064427 mRNA
CDS+3'UTR
Tobacco mosaic virus helicase domain-binding protein (Fragment).
AK102368
19
1
19
ACTGCCCAACTTTGAGACGAGTAATTCTCAACCAAAATAATCTCATTGGATCAATTCCAC
0
Os08g0446400
Os08g0446400 AK102368 mRNA
5'UTR+CDS
Leucine-rich repeat, plant specific containing protein.
Os05g0433800
20
1
20
ATCACAGCTCACATCTCTGTCGTGATCGCCACAGTTCAATCCACCAACAAATCAACAATC
0
Os05g0433800
Os05g0433800 COMBINER_EST
8
Protein of unknown function DUF1218 family protein.
AK099473
21
1
21
GCTGTCTGTAATTTCCTATAATTCGCTTGAACCTGTCGAAATCACAAGGATATGCATACA
0
Os12g0152700
Os12g0152700 AK099473 mRNA
CDS+3'UTR
Amino acid-binding ACT domain containing protein.
AK059852
22
1
22
GGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTATTGTTCTTGTCC
0
Os03g0685100
Os03g0685100 AK059852 mRNA
CDS+3'UTR
tRNA/rRNA methyltransferase (SpoU) family protein.
AK061533
23
1
23
GAAAAGTTTCTCCATGGCAGATTGAGGCTGTTATTTCCTGTAGATTTAGGTTTCGCTGTA
0
Os05g0285900
Os05g0285900 AK061533 mRNA
CDS+3'UTR
Hypothetical protein.
CI260116
24
1
24
CGCGTGCACGAAGTACGCGTCGAATGGTCCGAAAAATTGGCTCCTCACCCTTGCGCAAAA
0
Os03g0449000
Os03g0449000 CI260116 COMBINER
6
(No Hit)
AU057613
25
1
25
TGGTAGAAGCCTCTGCTTTTCCAGATGACCAGATCACTAAACAGGGCATTTAAGTCCATT
0
Os03g0775000
Os03g0775000 AU057613 COMBINER_EST
7
O-methyltransferase, N-terminal domain containing protein.
Os11g0213500
26
1
26
GAAGGCAGTGCTAGCAATTATGTTACCCTCTGTGGAATTTATGACGCAGTTGGTCAATCT
0
Os11g0213500
Os11g0213500 COMBINER_EST
8
TPR-like domain containing protein.
AK121607
27
1
27
AGAAAGTGGGATGACATTGCACATTGTGCTGGGTAAGTTTGGCAAATTGTGGTTTGAAAT
0
Os09g0261100
Os09g0261100 AK121607 mRNA
CDS+3'UTR
Cyclin-like F-box domain containing protein.
CI552267
28
1
28
CATAATATTGGTGGTGATCGATCGATCGATGCATTTGGTAATAATTTGAGCTGTAATTTT
0
Os02g0236600
Os02g0236600 CI552267 COMBINER_EST
0
Peroxidase P7 (EC 1.11.1.7) (TP7).
AK108708
29
1
29
GGAGCTCGAGCTCCTCCTCGGCATGGCGCTGCGAGCGCCTGCGATCGCGGAGGGGACGAT
0
Os10g0469200
Os10g0469200 AK108708 mRNA
CDS+3'UTR
Hypothetical protein.
40901 7081 Kbytes .Supplementary data files not provided
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