GEO help: Mouse over screen elements for information.
Status
Public on May 21, 2007
Title
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens
Manufacturer
Affymetrix
Manufacture protocol
See manufacturer's web site
Description
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html #%create_date=Wed Mar 11 17:51:22 2009 PDT #%chip_type=HuEx-1_0-st-v2 #%lib_set_name=HuEx-1_0-st #%lib_set_version=v2 #%genome-species=Homo sapiens #%genome-version=hg18 #%genome-version-ucsc=hg18 #%genome-version-ncbi=36 #%genome-version-create_date=2006-03 #%netaffx-annotation-date=2009-03-16 #%netaffx-annotation-netaffx-build=28
Web link
http://www.affymetrix.com/support/technical/byproduct.affx?product=huexon-st http://www.affymetrix.com/support/technical/libraryfilesmain.affx
Submission date
May 21, 2007
Last update date
Jul 10, 2014
Organization
Affymetrix, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone
888-362-2447
URL
http://www.affymetrix.com/index.affx
Street address
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Samples (9950)
GSM226363 , GSM226364 , GSM226365 , GSM226366 , GSM226367 , GSM226368
GSM226369 ,
GSM226370 ,
GSM226371 ,
GSM226372 ,
GSM226373 ,
GSM226374 ,
GSM238500 ,
GSM238501 ,
GSM238502 ,
GSM238503 ,
GSM238504 ,
GSM238505 ,
GSM238506 ,
GSM238507 ,
GSM238508 ,
GSM238509 ,
GSM238510 ,
GSM238511 ,
GSM238512 ,
GSM238513 ,
GSM238514 ,
GSM238515 ,
GSM238516 ,
GSM238881 ,
GSM238882 ,
GSM238883 ,
GSM238884 ,
GSM238885 ,
GSM238886 ,
GSM238887 ,
GSM238888 ,
GSM238889 ,
GSM238890 ,
GSM238891 ,
GSM238892 ,
GSM238893 ,
GSM238894 ,
GSM238895 ,
GSM238896 ,
GSM238897 ,
GSM238898 ,
GSM238899 ,
GSM238900 ,
GSM238901 ,
GSM238902 ,
GSM238903 ,
GSM238904 ,
GSM238905 ,
GSM238906 ,
GSM238907 ,
GSM238908 ,
GSM238909 ,
GSM238910 ,
GSM238911 ,
GSM238912 ,
GSM238913 ,
GSM238914 ,
GSM238915 ,
GSM238916 ,
GSM238917 ,
GSM238918 ,
GSM238919 ,
GSM238920 ,
GSM238921 ,
GSM238922 ,
GSM238923 ,
GSM238924 ,
GSM238925 ,
GSM238926 ,
GSM238927 ,
GSM238928 ,
GSM238929 ,
GSM238930 ,
GSM238931 ,
GSM238932 ,
GSM238933 ,
GSM238934 ,
GSM238935 ,
GSM245496 ,
GSM245497 ,
GSM245498 ,
GSM245499 ,
GSM245500 ,
GSM245501 ,
GSM245502 ,
GSM245503 ,
GSM245504 ,
GSM245505 ,
GSM245506 ,
GSM245507 ,
GSM245508 ,
GSM245509 ,
GSM245510 ,
GSM245511 ,
GSM245512 ,
GSM245513 ,
GSM245514 ,
GSM245515 ,
GSM245516 ,
GSM245517 ,
GSM245518 ,
GSM245519 ,
GSM245520 ,
GSM245521 ,
GSM245522 ,
GSM245523 ,
GSM245524 ,
GSM245525 ,
GSM245526 ,
GSM245527 ,
GSM245528 ,
GSM245529 ,
GSM245530 ,
GSM245531 ,
GSM245532 ,
GSM245533 ,
GSM245534 ,
GSM245535 ,
GSM245536 ,
GSM245537 ,
GSM245538 ,
GSM245539 ,
GSM245540 ,
GSM245541 ,
GSM245542 ,
GSM245543 ,
GSM245544 ,
GSM245545 ,
GSM245546 ,
GSM245547 ,
GSM245548 ,
GSM245549 ,
GSM245550 ,
GSM245551 ,
GSM245552 ,
GSM245553 ,
GSM245554 ,
GSM245555 ,
GSM245556 ,
GSM245557 ,
GSM245558 ,
GSM245559 ,
GSM245560 ,
GSM245561 ,
GSM245562 ,
GSM245563 ,
GSM245564 ,
GSM245565 ,
GSM245566 ,
GSM245567 ,
GSM245568 ,
GSM245569 ,
GSM245570 ,
GSM245571 ,
GSM245572 ,
GSM245573 ,
GSM245574 ,
GSM245575 ,
GSM245576 ,
GSM245577 ,
GSM245578 ,
GSM245579 ,
GSM245580 ,
GSM245581 ,
GSM245582 ,
GSM245583 ,
GSM245584 ,
GSM245585 ,
GSM245586 ,
GSM245587 ,
GSM245588 ,
GSM245589 ,
GSM245590 ,
GSM245591 ,
GSM245592 ,
GSM245593 ,
GSM245594 ,
GSM245595 ,
GSM245596 ,
GSM245597 ,
GSM245598 ,
GSM245599 ,
GSM245600 ,
GSM245601 ,
GSM245602 ,
GSM245603 ,
GSM245604 ,
GSM245605 ,
GSM245606 ,
GSM245607 ,
GSM245608 ,
GSM245609 ,
GSM245610 ,
GSM245611 ,
GSM245612 ,
GSM245613 ,
GSM245614 ,
GSM245615 ,
GSM245616 ,
GSM245617 ,
GSM245618 ,
GSM245619 ,
GSM245620 ,
GSM245621 ,
GSM245622 ,
GSM245623 ,
GSM245624 ,
GSM245625 ,
GSM245626 ,
GSM245627 ,
GSM245628 ,
GSM245629 ,
GSM245630 ,
GSM245631 ,
GSM245632 ,
GSM245633 ,
GSM245634 ,
GSM245635 ,
GSM245636 ,
GSM245637 ,
GSM245638 ,
GSM245639 ,
GSM245640 ,
GSM245641 ,
GSM245642 ,
GSM245643 ,
GSM245644 ,
GSM245645 ,
GSM245646 ,
GSM245647 ,
GSM245648 ,
GSM245649 ,
GSM245650 ,
GSM245651 ,
GSM245652 ,
GSM245653 ,
GSM245654 ,
GSM245655 ,
GSM245656 ,
GSM245657 ,
GSM245658 ,
GSM245659 ,
GSM245660 ,
GSM245661 ,
GSM245662 ,
GSM245663 ,
GSM245664 ,
GSM245665 ,
GSM245666 ,
GSM245667 ,
GSM245668 ,
GSM245669 ,
GSM245670 ,
GSM245671 ,
GSM257571 ,
GSM257915 ,
GSM257931 ,
GSM257999 ,
GSM287121 ,
GSM287122 ,
GSM287123 ,
GSM287124 ,
GSM287125 ,
GSM287126 ,
GSM287127 ,
GSM287128 ,
GSM287129 ,
GSM287130 ,
GSM287131 ,
GSM287132 ,
GSM287133 ,
GSM287134 ,
GSM287135 ,
GSM287136 ,
GSM287137 ,
GSM287138 ,
GSM287139 ,
GSM287140 ,
GSM287141 ,
GSM287142 ,
GSM287143 ,
GSM287144 ,
GSM287145 ,
GSM287146 ,
GSM298993 ,
GSM298994 ,
GSM298995 ,
GSM298996 ,
GSM298997 ,
GSM298998 ,
GSM298999 ,
GSM299000 ,
GSM299001 ,
GSM299002 ,
GSM302935 ,
GSM302936 ,
GSM302937 ,
GSM302938 ,
GSM307537 ,
GSM307538 ,
GSM307539 ,
GSM307540 ,
GSM307541 ,
GSM307542 ,
GSM307543 ,
GSM307544 ,
GSM307545 ,
GSM307546 ,
GSM307547 ,
GSM307548 ,
GSM307549 ,
GSM307550 ,
GSM307551 ,
GSM307552 ,
GSM307553 ,
GSM307554 ,
GSM307555 ,
GSM307556 ,
GSM307557 ,
GSM307558 ,
GSM307559 ,
GSM307560 ,
GSM307561 ,
GSM307562 ,
GSM307563 ,
GSM307564 ,
GSM307565 ,
GSM307566 ,
GSM307567 ,
GSM307568 ,
GSM307569 ,
GSM307570 ,
GSM307571 ,
GSM307572 ,
GSM307573 ,
GSM307574 ,
GSM307575 ,
GSM307576 ,
GSM315407 ,
GSM315408 ,
GSM315409 ,
GSM315410 ,
GSM315412 ,
GSM315415 ,
GSM327360 ,
GSM327361 ,
GSM327362 ,
GSM327363 ,
GSM327364 ,
GSM327365 ,
GSM327366 ,
GSM327367 ,
GSM327368 ,
GSM327369 ,
GSM327370 ,
GSM327371 ,
GSM327372 ,
GSM327373 ,
GSM327374 ,
GSM327375 ,
GSM327376 ,
GSM327377 ,
GSM327378 ,
GSM327379 ,
GSM333253 ,
GSM333254 ,
GSM333255 ,
GSM333256 ,
GSM333257 ,
GSM333258 ,
GSM333259 ,
GSM333260 ,
GSM333261 ,
GSM333262 ,
GSM333263 ,
GSM333264 ,
GSM333265 ,
GSM333266 ,
GSM333267 ,
GSM333268 ,
GSM333269 ,
GSM333270 ,
GSM333271 ,
GSM333272 ,
GSM333273 ,
GSM333274 ,
GSM333275 ,
GSM333276 ,
GSM333277 ,
GSM333278 ,
GSM333279 ,
GSM333280 ,
GSM333281 ,
GSM333282 ,
GSM333283 ,
GSM333284 ,
GSM333285 ,
GSM333286 ,
GSM333287 ,
GSM333288 ,
GSM333289 ,
GSM333290 ,
GSM333291 ,
GSM333292 ,
GSM333293 ,
GSM333294 ,
GSM333295 ,
GSM333296 ,
GSM333297 ,
GSM333298 ,
GSM333299 ,
GSM333300 ,
GSM333301 ,
GSM333302 ,
GSM335817 ,
GSM335818 ,
GSM335819 ,
GSM335820 ,
GSM335821 ,
GSM335822 ,
GSM336746 ,
GSM336747 ,
GSM336748 ,
GSM336749 ,
GSM336750 ,
GSM336751 ,
GSM336752 ,
GSM336753 ,
GSM336754 ,
GSM336755 ,
GSM336756 ,
GSM336757 ,
GSM336758 ,
GSM336759 ,
GSM336760 ,
GSM336761 ,
GSM336762 ,
GSM336763 ,
GSM336764 ,
GSM336765 ,
GSM336766 ,
GSM336767 ,
GSM336769 ,
GSM336770 ,
GSM336771 ,
GSM336772 ,
GSM336773 ,
GSM336774 ,
GSM336775 ,
GSM336776 ,
GSM336777 ,
GSM336778 ,
GSM336779 ,
GSM336780 ,
GSM336781 ,
GSM336782 ,
GSM336783 ,
GSM336784 ,
GSM336785 ,
GSM336786 ,
GSM336787 ,
GSM336788 ,
GSM336789 ,
GSM336790 ,
GSM336791 ,
GSM336792 ,
GSM336793 ,
GSM336794 ,
GSM336795 ,
GSM336796 ,
GSM336797 ,
GSM336798 ,
GSM336799 ,
GSM336800 ,
GSM336801 ,
GSM336802 ,
GSM336803 ,
GSM336804 ,
GSM336805 ,
GSM336806 ,
GSM336807 ,
GSM336808 ,
GSM336809 ,
GSM336810 ,
GSM336811 ,
GSM336812 ,
GSM336813 ,
GSM336814 ,
GSM336815 ,
GSM336816 ,
GSM336817 ,
GSM336818 ,
GSM336819 ,
GSM336820 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
Series (217)
GSE8945
Expression data from RNAi knockdown HeLa cells
GSE9342
Expression Analysis of 17 human T-ALL cell lines
GSE9385
Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon arrays
GSE9703
Identification of Common Genetic Variants that Account for Transcript Isoform Variation between Human Populations
GSE10480
Hematopietic system high resolution transcriptome
GSE11360
Exon-level summary data from Affymetrix Human Exon 1.0 ST array
GSE11361
Genetic variants in Major Histocompatibility Complex-linked genes Associate with Pediatric Liver Transplant Rejection
GSE11832
naive/activated ANOVA group
GSE11833
LL-sh4/uninfected/shGFP ANOVA group
GSE11834
HnRNPLL is a global regulator of alternative splicing in activated T cells
GSE11967
Identifying alternative hyper-splicing signatures in MG-thymoma by exon arrays
GSE12236
Whole Genome Exon Arrays Identify Differential Expression of Alternatively Spliced, Cancer-related Genes in Lung Cancer
GSE12546
Gene and exon expression of Human Umbilical Vein Endothelial Cell under Mimic Hypoxia Stress
GSE13069
Gene Expression and Isoform Variation: Exon-level Analysis
GSE13072
Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays
GSE13195
Gene expression and alternative splicing in human gastric cancer
GSE13297
Cardiac precursor differentiation from hESCs by lentiviral promoter drug selection
GSE13344
Exon Array expression data from 13 areas of the late second trimester human brain
GSE13410
Mechanism and transcriptional program of YB-1 in breast cancer cell lines.
GSE14352
Genome Wide Analysis of Immune Activation in Human T and B Cells Reveals Distinct Classes of Alternatively Spliced Genes
GSE14588
Alternative Splicing in Erythropoiesis
GSE15207
Genome wide mapping of the haematopoietic system transcriptome
GSE16534
Exon array profiling detects EML4-ALK fusion in breast, colorectal and non-small cell lung cancers.
GSE16732
Affymetrix Gene Chip Human Exon 1.0 ST Array expression profiling of 41 human breast cancer cell lines
GSE17397
Alternative splicing in HeLa cells after sodium butyrate treatment
GSE18274
Four parameters increase the sensitivity and specificity of the exon array analysis and disclose 25 novel aberrantly spliced exons in myotonic dystrophy
GSE18300
Hypoxia related splice variants in HNSCC
GSE18920
Sporadic ALS has compartment-specific aberrant exon splicing and altered cell-matrix adhesion biology
GSE18927
University of Washington Human Reference Epigenome Mapping Project
GSE19090
Exon arrays of ENCODE tier 1, tier 2 and tier 3 cell types
GSE19154
Exon level integration of proteomics and microarray data
GSE19441
Critical role of the hydrogen peroxide-responsive nuclear kinase CK1-alpha-LS in vascular cell activation
GSE19891
Regulation of Splicing by Clinical Drugs
GSE19927
Transcript and differential exon level changes in T-REx-293 cells after Tat-SF1 depletion
GSE19940
Human Negative Elongation Factor Activates Transcription and Regulates Alternative Transcription Initiation
GSE20200
Exon-Level Expression Data from Primary B Cells, Early Proliferating EBV-infected B Cells and Lymphoblastoid Cell Lines
GSE20342
Estrogen regulation and physiopathologic significance of alternative promoters in breast cancer
GSE20567
Effects of PMA on exon usage of HL60, THP-1, and U937 cells
GSE20904
Pluripotent reprogramming arises from a unique subset of pre-disposed human dermal fibroblasts
GSE21032
Integrative genomic profiling of human prostate cancer
GSE21034
Whole-transcript and exon-level expression data for human primary and metastatic prostate cancer samples and control normal adjacent benign prostate
GSE21163
Expression data from pancreatic cancer cell lines
GSE21337
Genome-wide analysis of alternative splicing points to novel leukemia-relevant genes in acute myeloid leukemia.
GSE21440
Gene expression analysis of pancreatic cancer associated fibroblasts
GSE21572
Expression data from human stomach cell lines (MKN45 and MKN45P)
GSE21795
Misregulation of alternative splicing of BIN1 leads to T-tubule alterations and muscle weakness in myotonic dystrophy
GSE21840
Cotranscriptional exon skipping in the genotoxic stress response
GSE22498
Expression data from normal or DM1 myoblasts
GSE23361
Significant Downregulation of Platelet Gene Expression in Metastatic Lung Cancer
GSE23397
Genome wide screening for alternative splicing events in pancreatic cancer
GSE23514
Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB (Exon array)
GSE23522
Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB
GSE23676
Expression data from advanced Parkinson's disease (PD) patients leukocytes - prior to and following deep brain stimulation (DBS) treatment in on and off stimulation conditions, and matched healthy control (HC) subjects
GSE23768
Diverse somatic mutation patterns and pathway alterations in human cancers
GSE23959
Identifying gene expression profiles in hypoplastic left heart syndrome and age-matched normal controls
GSE24391
Coupled pre-mRNA and mRNA dynamics unveil the operation strategies underlying transcriptional responses
GSE24581
Small Molecule Amiloride Modulates Oncogenic RNA Alternative Splicing to Devitalize Human Hepatocellular Carcinoma Huh-7 Cells
GSE24778
Expresssion data in K562 cells, before and after TPA induction and including a RUNX1 knockout construct or a control structure
GSE24779
Dynamic combinatorial interactions of RUNX1 and cooperating partners regulates megakaryocytic differentiation in cell line models
GSE24976
Amiloride modulates alternative splicing in leukemic cells and re-sensitizes Bcr-AblT315I mutant cells to imatinib
GSE25219
Spatio-temporal transcriptome of the human brain
GSE25282
HP1gamma Knock Down in Human cells
GSE25452
The Hace1 E3 Ligase Modulates the Activity of Multiple Tumor Suppressive CRL E3 Ligases by binding to CAND1
GSE26018
Crosstalk between gene body DNA methylation, H3K9me3 and H3K36me3 chromatin marks and transcription [HuEx-1_0-st]
GSE26020
Crosstalk between gene body DNA methylation, H3K9me3 and H3K36me3 chromatin marks and transcription
GSE26341
Differentially regulated splice variants and systems biology analysis of Kaposi's Sarcoma-associated Herpesvirus-infected lymphatic endothelial cells
GSE26972
Expression data from non-demented controls (NDCs) and Alzheimer's disease (AD) patients
GSE27127
Exon-array profiling of Heat-shock stress response in HeLa cell line
GSE27370
81 human leukemia samples (affymetrix exon array)
GSE27388
Exon-array profiling of squamous cell carcinoma and adenocarcinoma in human cervical FFPE samples
GSE27501
Quantitative Analysis of Alternative Spliced Variants in HNSCC
GSE27608
Exon array analysis reveals neuroblastoma tumors have distinct alternative splicing patterns according to stage and MYCN amplification status
GSE28657
The effect of artificial microRNA p-27-5p on breast cancer cells
GSE28672
Son Maintains Accurate Splicing of Pre-mRNAs Encoding Chromatin Modifiers
GSE28863
Exon array analysis in primary human fibroblasts
GSE29156
Serous ovarian benign tumor and type II carcinoma data set for expression and paracrine signaling investigation
GSE29301
Exon-Level Expression Data from Primary Human B Cells and Lymphoblastoid Cell Lines (LCLs) on HuEx and U133 2.0 plus Platforms
GSE29682
Comparison between cell lines from 9 different cancer tissue (NCI-60) (Affymetrix HuEx 1.0)
GSE29778
HuR (ELAVL1) RIP-chip and knockdown exon array
GSE29780
Integrative regulatory mapping indicates that the RNA-binding protein HuR (ELAVL1) couples pre-mRNA processing and mRNA stability
GSE29989
Transcriptome Profiling and Sequencing of differentiated Human Hematopoietic Stem cells Reveal Lineage Specific Expression and Alternative Splicing of Genes
GSE30422
Tissue-specific genetic regulation of splicing and expression (exon-level)
GSE30472
Gene expression profiles of gliomas in formalin-fixed paraffin-embedded material
GSE30483
Tissue-specific genetic regulation of splicing and expression
GSE30727
Comparison of exon-wise expression profiling between normal and cancer tissues of human stomach
GSE31171
Exon level expression profiling of mutant U2AF35 transduced HeLa cells
GSE31173
Expression profile of mutant U2AF35 transduced cells
GSE31608
Effect of IL-11 on gene expression in JEG-3 and HTR-8/SVneo trophoblastic cells
GSE31757
A Systematic Comparison and Evaluation of High Density Exon Arrays and RNA-seq technology in Unraveling the Peripheral Blood Transcriptome of Sickle Cell Disease.
GSE31838
Tumor-specific retargeting of an oncogenic transcription factor chimera results in dysregulation of chromatin and transcription
GSE32875
Identification of novel androgen-regulated pathways and mRNA isoforms through genome-wide exon-specific profiling of the LNCaP transcriptome
GSE32932
Exon arrays from HeLa cells transfected with GFP-ZRANB2 vector
GSE32933
Exon arrays from HeLa cells transfected with RBM4-specific siRNA
GSE33214
RNF20 and USP44 regulate embryonic stem cell differentiation by modulating H2B monoubiquitylation
GSE33282
Transcriptome analysis of EYA2 non-expressing pancreatic cancer cell lines with stable transfectant overexpressing EYA2
GSE33771
Mediator Complex Regulates Alternative mRNA Processing via the Med23 Subunit
GSE33855
Loss of nuclear TDP-43 in ALS causes altered expression of splicing machinery and widespread dysregulation of RNA splicing in motor neurons [fibroblasts]
GSE34104
Gene expression Microarray analysis for HEK293 WT and ELL KD with control and 1hr EGF stimulated conditions.
GSE34855
Transforming pluripotency: an exon-level study of malignancy-specific transcripts in human embryonal carcinoma and embryonic stem cells
GSE34865
Whole-genome gene expression and splicing analysis of midbrain neurons derived from human embryonic stem cells: relevance to Parkinson's disease
GSE36202
Effect of LIF and IL-6 on gene expression in JEG-3 and HTR-8/SVneo trophoblastic cells
GSE36593
Gene expression of SLNs (Synthetic Lethal with Nutlin-3) on HCT116 cells
GSE36729
Identification of re-capping substrates for the cytoplasmic capping enzyme complex
GSE36837
Hypoxia effect on human umbilical vein endothelial cells - gene and exon expression
GSE37138
Exon array analysis of the response to bevacizumab/erlotinib in advanced non-small cell lung cancer
GSE37264
Genome-wide profiling of altered gene expression in the neocortex of Alzheimer's disease (exon level)
GSE37561
Expression data from HeLa cells after hnRNP L knockdown (versus luciferase control), including cycloheximide treatment
GSE37562
hnRNP L-RNA in HeLa
GSE37623
Analysis of transcriptome changes in HeLa cells after knock-down of variant U1.8 snRNA
GSE37741
Effects of knockdown of Jmjd6 on human umbilical vein endothelial cells - gene and exon expression
GSE38055
Expression data from HEK293T cells infected with Shigella or treated with Rapamycin
GSE38255
Differential accumulation of splice variants and transcripts as a result of PI3K inhibition in T lymphocytes and the potential role of their gene products in T cell silencing
GSE39013
Stability of miRNA in FFPE tumour samples exhibiting degraded mRNA [Cervix samples series 1]
GSE39014
Stability of miRNA in FFPE tumour samples exhibiting degraded mRNA [Cervix samples series 2]
GSE39016
Stability of miRNA in FFPE tumour samples exhibiting degraded mRNA [Bladder samples]
GSE39066
Stability of miRNA in FFPE tumour samples exhibiting degraded mRNA [cell lines]
GSE39067
Stability of miRNA in FFPE tumour samples exhibiting degraded mRNA
GSE39937
Brd2 regulates gene expression and alternative splicing.
GSE40442
Gene expression profiling in primary AML cells treated with decitabine and cytarabine
GSE40871
Gene expression and methylation profiling in primary AML cells treated with decitabine and cytarabine
GSE41409
Sense and antisense exon profiling across human, mouse, and rat
GSE41462
Antisense exon profiling across human, mouse, and rat
GSE41464
Sense exon profiling across human, mouse, and rat
GSE41987
Global analysis of the molecular targets of MBNL1 and CELF1 proteins and their potential role in DM1
GSE42561
Genome-wide differences in expression and alternative splicing in human dendritic cells upon E.coli challenge
GSE43097
Integrin α3b1-dependent gene expression in MDA-MB-231 breast cancer cells
GSE43107
Intrinsic glioma subtypes in EORTC 26951 (part 1)
GSE43134
A mutation in a splicing factor that causes retinitis pigmentosa (RP) has a transcriptome-wide effect on mRNA splicing
GSE43334
hCAF1/CNOT7 regulates interferon signaling by targeting STAT1
GSE43388
Intrinsic glioma subtypes in EORTC 26951
GSE43595
IL-27 Inhibits HIV-1 Infection in Human Macrophages by Down-regulating Host Factor SPTBN1 during Monocyte to Macrophage Differentiation
GSE43754
Genome-wide comparison of the transcriptomes of highly enriched normal and chronic myeloid leukemia stem and progenitor cell populations
GSE43830
Long Noncoding RNA MALAT1 Controls Cell Cycle Progression by Regulating the Expression of Oncogenic Transcription Factor B-MYB
GSE44874
Expression data from 22 human myotubes
GSE45379
Transcriptome changes in spliceostatin A treated cells
GSE45380
Pulsatile exposure to simulated reflux leads to stereotypical changes in gene expression in a 3D model of oesophageal mucosa
GSE46039
hsa-miR-92a knock down in Flp-in T-REx 293-PTH-AGO1 cells
GSE46691
Discovery and validation of a prostate cancer genomic classifier that predicts early metastasis following radical prostatectomy
GSE46706
Expression data generated from post-mortem human brain tissue originating from neurologically and neuropathologically control individuals
GSE47032
Genome-wide analysis of differentially expressed genes and splicing isoforms in clear cell Renal Cell Carcinoma
GSE47465
Global Regulation of Alternative Internal Exon Usage by mRNA 3' End Formation Factors [Affymetrix]
GSE47968
Effect of myotonic dystrophy on pre-mRNA alternative splicing in skeletal muscle
GSE48828
Expression and Splicing Analysis of Myotonic Dystrophy and Other Dystrophic Muscle
GSE49105
Gene Expresion in Ausitm Spectrum Disorders (ASD)
GSE50133
Expression data from stable clones of BE(2)M17 cell line expressing miR-142 or miR-null
GSE50421
Exon Array Data for Colerectal Tumor and Normal Samples
GSE50592
Expression data from colorectal biopsy samples - adenomas or normal mucosae
GSE51066
A genomic classifier predicting metastatic disease progression in men with biochemical recurrence after prostatectomy
GSE52244
Exon-expression profiling of CD4+ T cells derived from HTLV-1-infected individuals with or without malignancy
GSE53123
Expression data from MOLT-4 and CCRF-CEM cells grown in serum free medium, untreated, treated with direct (A-769662) and indirect (AICAR) AMPK activators.
GSE53405
Circadian regulation of EGF-receptor signaling by glucocorticoids
GSE53474
A novel class of alternative 3’-terminal exons is involved in cell-cycle regulation by topoisomerase inhibitors
GSE53702
Inflammation-induced acute phase response in skeletal muscle and critical illness myopathy
GSE53975
Calcitriol Induces Endoplasmic Reticulum Stress Response in Breast Cancer Cells
GSE54090
Slu7 is essential for liver differentiation, metabolism and quiescence
GSE56500
Loss of nuclear TDP-43 in ALS causes altered expression of splicing machinery and widespread dysregulation of RNA splicing in motor neurons [LCM]
GSE56504
Loss of nuclear TDP-43 in ALS causes altered expression of splicing machinery and widespread dysregulation of RNA splicing in motor neurons
GSE56878
The conserved ubiquitin-like protein Hub1 plays a critical role in splicing in human cells
GSE57076
Expression data from human THP-1 monocytes stimulated with increasing concentrations of arachidonic (AA) or oleic acid (OA).
GSE57281
RNA helicases DDX5 and DDX17 dynamically orchestrate transcription, microRNA and splicing programs in cell differentiation
GSE57933
Discovery and validation of a novel expression signature for recurrence in high-risk bladder cancer post-cystectomy
GSE58038
Exon Level Expression Profiling: a Novel Unbiased Transcriptome
GSE58598
Stromal and epithelial changes in breast cancer following endocrine treatment
GSE58657
Sphingosine-1-phosphate induces pro-remodelling response in airway smooth muscle cells
GSE60162
Microrray expression data of Osteoarthritis synovial fibroblasts (OASF) transfected with TBX5
GSE60392
Global Promotion of Alternative Internal Exon Usage by mRNA 3' End Formation Factors
GSE60863
Exon-level analysis of 1231 samples originating from 134 Caucasian individuals
GSE61676
24h-response to bevacizumab erlortinib in non-small cell lung cancer from blood-based exon array profiling
GSE62116
Validation of a genomic classifier that predicts metastasis following radical prostatectomy in at risk patient population
GSE62667
A genomic classifier improves prediction of metastatic disease within 5 years after surgery in node-negative high-risk prostate cancer patients managed by radical prostatectomy without adjuvant therapy
GSE62764
Genome-wide peripheral blood transcriptome analysis of Arab female Lupus and Lupus nephritis
GSE63036
RBBP6 isoforms regulate the human polyadenylation machinery and modulate expression of mRNAs with AU-rich 3' UTRs
GSE63111
Gene expression and alternative splicing in pancreatic ductal adenocarcinoma (PDAC) [exon level]
GSE63158
Gene expression and alternative splicing in pancreatic ductal adenocarcinoma (PDAC)
GSE65941
Oncogenic Fusion Protein EWS-FLI1 is a Network Hub that Regulates Alternative Splicing
GSE66254
Frequent derepression of the mesenchymal transcription factor gene in acute myeloid leukemia (human)
GSE66256
Frequent derepression of the mesenchymal transcription factor gene in acute myeloid leukemia
GSE66699
Liver gene expression profiles of interferon therapy in chronic hepatitis B Patients (Exon)
GSE66700
Liver gene expression profiles of interferon therapy in chronic hepatitis B Patients
GSE66849
Study the transcriptional level changes of induced pluripotent stem (iPS) cells from X-linked Dyskeratosis Congenita (DC) Patients
GSE67027
Splicing events and transcriptome changes upon TDP-43 and FUS knock-down in human neuroblastoma cells
GSE67312
Patient-derived primary xenografts in the preclinical development of novel targeted therapies for bladder cancer
GSE68374
Differential effects of and on Wnt-signaling in adult and fetal bone marrow-derived MSC
GSE69182
Exon level expression profiling of colorectal cancer tissue samples (77 samples)
GSE71010
Complexity and Specificity of the Neutrophil Transcriptome in Diverse Inflammatory States
GSE71745
Analysis of gene expression and splicing after doxycycline-induced knockdown of SRSF3
GSE72291
Validation of a genomic classifier for prediction of metastasis following postoperative radiation therapy.
GSE72794
Splicing regulation by USP39 deubiquitinase is essential for KRAS-driven cancer
GSE72894
Expression data obtained from primary dermal papilla cell cultures and human hair follicle organ culture from occipital scalp
GSE73439
Changes in gene expression and splicing associated with pregnancy, labor and regions of human adipose tissue.
GSE73815
Analysis of TCERG1 depletion by exon arrays
GSE73856
Gene Expression Human Preimplantation Embryos
GSE74095
Chinese lung ADC exon-level expression
GSE74115
Chinese lung SCC exon-level expression
GSE74116
Chinese lung ADC adjacent normal sample exon-level expression
GSE74117
Chinese lung SCC adjacent normal sample exon-level expression
GSE74313
An Integrative Informatics Approach to Identify Drug Targets and Therapies for Chronic Allograft Injury after Kidney Transplantation
GSE76176
Role of MYC target lncRNA DANCR in cancer
GSE78246
Quantitative Trait Locus and Brain Expression of HLA-DPA1 And Shared Immune Alterations in Psychiatric Disorders
GSE79915
Utilization of a Genomic Classifier for Prediction of Metastasis Following Salvage Radiation Therapy after Radical Prostatectomy
GSE79956
Gene Expression Based Characterization of B7H3 In Prostate Cancer [BCR]
GSE79957
Tissue-based Genomics Augments Post-prostatectomy Risk Stratification in a Natural History Cohort of Intermediate- and High-Risk Men
GSE79958
Gene Expression Based Characterization of B7H3 In Prostate Cancer
GSE80683
Association of Multiparametric MRI Quantitative Imaging Features with Prostate Cancer Gene Expression in MRI-targeted Prostate Biopsies
GSE83111
Recurrent involvement of DPP9 in gene fusions in serous ovarian carcinoma
GSE87619
Temporal gene expression of human-fetal and glioblastoma stem cell cultures under directed differentiation conditions
GSE94354
Modeling Transcriptional Rewiring in Neutrophils through the Course of Treated Juvenile Idiopathic Arthritis
GSE96579
Modifications induced by HIV-1 Tat protein in cellular splicing mechanisms
GSE102465
Alignment of Mitotic Chromosomes in Human Cells Involves SR-Like Splicing Factors Btf and TRAP150
GSE110259
Effect of TUC338 knockdown on gene expression
GSE110548
Exon expression profiling of de novo diffuse large B-cell lymphoma samples
GSE111477
Inflammatory versus non-inflammatory breast cancers
GSE119616
Expression data of candidates for prostate cancer active surveillance
GSE131617
Genes associated with the progression of neurofibrillary tangles in Alzheimer's disease
GSE135277
CD44 alternative splicing senses intragenic DNA methylation in tumors via direct and indirect mechanisms
GSE176124
Assessing androgen sensitive RNA splicing patterns in LNCaP cells.
GSE208338
Expression data from postmortem human dorsolateral prefrontal cortex - psychiatric disorders & healthy controls
Relations
Alternative to
GPL6608
Alternative to
GPL7149
Alternative to
GPL7557
Affiliated with
GPL5175
Alternative to
GPL9113 (Alternative CDF)
Alternative to
GPL10520 (Alternative)
Alternative to
GPL10585 (Alternative CDF [HuEx10stv2_Hs_VEGAE_v10])
Alternative to
GPL11028
Alternative to
GPL11440
Alternative to
GPL18935 (alternative)
Data table header descriptions
ID
probeset_id
GB_LIST
GenBank and RefSeq Accessions from mrna_assignment column
SPOT_ID
genomic location of the transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).
seqname
chromosome
RANGE_GB
NCBI RefSeq for chromosome of current build
RANGE_STRAND
strand (+|-)
RANGE_START
start (integer). Coordinates are standard 1-based (length=stop-start+1).
RANGE_STOP
stop (integer). Coordinates are standard 1-based (length=stop-start+1).
probe_count
Total number of probes in this probe set
transcript_cluster_id
Unique identifier for the transcript cluster containing this probe set.
exon_id
Unique identifier for the exon cluster containing this probe set.
psr_id
Unique identifier for the probe selection region containing this probe set.
gene_assignment
Gene name(s) for each assigned mRNA for mRNAs that corresponds to known genes.
mrna_assignment
Public mRNAs that should be detected by this probe set based on sequence alignment determined at the time of the current NetAffx annotation update.
level
Level of design-time annotation support for the probe set.
probeset_type
Array design category of the probe set.
Data table
ID
GB_LIST
SPOT_ID
seqname
RANGE_GB
RANGE_STRAND
RANGE_START
RANGE_STOP
probe_count
transcript_cluster_id
exon_id
psr_id
gene_assignment
mrna_assignment
level
probeset_type
2315101
NR_024005 , NR_024004 , AK093685
chr1:1788-2030
chr1
NC_000001.9
+
1788
2030
4
2315100
1
1
NR_024005 // MGC13005 /// NR_024004 // MGC13005 /// AK093685 // MGC13005
NR_024005 // chr1 // 100 // 4 // 4 // 0 /// NR_024004 // chr1 // 100 // 3 // 3 // 0 /// AK093685 // chr1 // 75 // 3 // 4 // 0
extended
main
2315102
NR_024004 , NR_024005 , AK093685
chr1:2520-2555
chr1
NC_000001.9
+
2520
2555
4
2315100
2
2
NR_024004 // MGC13005 /// NR_024005 // MGC13005 /// AK093685 // MGC13005
NR_024004 // chr1 // 100 // 4 // 4 // 0 /// NR_024005 // chr1 // 100 // 4 // 4 // 0 /// AK093685 // chr1 // 100 // 4 // 4 // 0
extended
main
2315103
chr1:2927-2958
chr1
NC_000001.9
+
2927
2958
4
2315100
3
3
---
---
full
main
2315104
NR_024004 , NR_024005 , AK093685
chr1:3229-3751
chr1
NC_000001.9
+
3229
3751
4
2315100
4
4
NR_024004 // MGC13005 /// NR_024005 // MGC13005 /// AK093685 // MGC13005
NR_024004 // chr1 // 100 // 4 // 4 // 0 /// NR_024005 // chr1 // 100 // 4 // 4 // 0 /// AK093685 // chr1 // 100 // 4 // 4 // 0
extended
main
2315105
NR_024004 , NR_024005 , AK093685
chr1:4013-4231
chr1
NC_000001.9
+
4013
4231
4
2315100
4
5
NR_024004 // MGC13005 /// NR_024005 // MGC13005 /// AK093685 // MGC13005
NR_024004 // chr1 // 100 // 4 // 4 // 0 /// NR_024005 // chr1 // 100 // 4 // 4 // 0 /// AK093685 // chr1 // 100 // 4 // 4 // 0
extended
main
2315107
DQ786314
chr1:4631-4920
chr1
NC_000001.9
+
4631
4920
4
2315106
5
6
---
DQ786314 // chr1 // 100 // 3 // 3 // 0
extended
main
2315108
XM_001722700
chr1:5018-5053
chr1
NC_000001.9
+
5018
5053
4
2315106
6
7
XM_001722700 // LOC100132970
XM_001722700 // chr1 // 50 // 2 // 4 // 0
extended
main
2315110
chr1:9330-9568
chr1
NC_000001.9
+
9330
9568
4
2315109
7
8
---
---
extended
main
2315112
chr1:15010-15080
chr1
NC_000001.9
+
15010
15080
4
2315111
8
9
---
---
extended
main
2315114
DQ786265
chr1:17429-17642
chr1
NC_000001.9
+
17429
17642
4
2315113
9
10
---
DQ786265 // chr1 // 100 // 4 // 4 // 0
extended
main
2315116
chr1:18302-18524
chr1
NC_000001.9
+
18302
18524
4
2315115
10
11
---
---
extended
main
2315118
chr1:20486-20529
chr1
NC_000001.9
+
20486
20529
4
2315117
11
12
---
GENSCAN00000003929 // chr1 // 100 // 4 // 4 // 0
full
main
2315120
chr1:25566-25656
chr1
NC_000001.9
+
25566
25656
4
2315119
12
13
---
GENSCAN00000020708 // chr1 // 100 // 4 // 4 // 0 /// GENSCAN00000027117 // chr1 // 100 // 4 // 4 // 0 /// GENSCAN00000003933 // chr1 // 100 // 4 // 4 // 0
full
main
2315122
chr1:25806-25831
chr1
NC_000001.9
+
25806
25831
2
2315121
13
14
---
---
full
main
2315124
chr1:27523-27571
chr1
NC_000001.9
+
27523
27571
4
2315123
14
15
---
---
full
main
2315126
chr1:41818-41856
chr1
NC_000001.9
+
41818
41856
4
2315125
15
16
---
---
full
main
2315127
chr1:55399-55425
chr1
NC_000001.9
+
55399
55425
3
2315125
16
17
---
---
full
main
2315128
chr1:60458-60496
chr1
NC_000001.9
+
60458
60496
4
2315125
17
18
---
---
full
main
2315130
chr1:42321-42431
chr1
NC_000001.9
+
42321
42431
4
2315129
18
19
---
---
full
main
2315131
chr1:42801-42931
chr1
NC_000001.9
+
42801
42931
4
2315129
19
20
---
---
full
main
Total number of rows: 1432155 Table truncated, full table size 293260 Kbytes .
Supplementary data files not provided