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Platform GPL544 Query DataSets for GPL544
Status Public on Dec 19, 2003
Title Rosetta (Merck) Splicing Experiment, Chip 2 of 5
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
 
Description Oligonucleotide array on glass.
Contains 36-mer probes on 10-mer T stilts (46-mer), each spanning an exon-exon junction.
Submitted for Science publication Johnson et al.
Keywords = junction splicing oligonucleotide
 
Web link http://www.rii.com
Contributor(s) Johnson JM, Castle J, Garrett-Engele P, Loerch PM, Kan Z, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD
Submission date Oct 14, 2003
Last update date Jan 18, 2013
Contact name John Castle
E-mail(s) john_castle@merck.com
Phone 425-636-6337
Organization name Merck
Department Informatics
Lab Rosetta
Street address 12040 115th Ave NE
City Kirkland
State/province WA
ZIP/Postal code 98034
Country USA
 
Samples (50) GSM11243, GSM11244, GSM11245, GSM11246, GSM11247, GSM11248 
Series (1)
GSE740 Rosetta_Merck_Splicing_Experiment

Data table header descriptions
ID Rosetta generated unique probe identifier
GENE_SYMBOL Gene name from Locus Link as of November, 2001.
GB_ACC RefSeq Accession Number of sequence used to design oligonucleotide probe, based on NCBI file hs.fna as of November 2001.
EXON1 5prime exon of the junction probe, as defined by RefSeq mRNA, NCBI conting, and sim4 as of November, 2001
EXON2 3prime exon of the junction probe, as defined by RefSeq mRNA, NCBI conting, and sim4 as of November, 2001
SPOT_ID
GENOMIC_CONTIG Accession number of NCBI genomic contig used. As of November, 2001 and specified by LocusLink
SEQUENCE Sequence of oligonucleotide probe

Data table
ID GENE_SYMBOL GB_ACC EXON1 EXON2 SPOT_ID GENOMIC_CONTIG SEQUENCE
174950444 BIG1 NM_006421.2 26 27 spans exon 26 and exon 27 NT_027070.3 TATAATGAAACGGAACAGGTCTCCAACAATTCGAGATTTTTTTTTT
174950445 BIG1 NM_006421.2 27 28 spans exon 27 and exon 28 NT_027070.3 CAACCGGGCACATTGTCACCCTTGTATTTGAAAAACTTTTTTTTTT
174950446 BIG1 NM_006421.2 28 29 spans exon 28 and exon 29 NT_027070.3 GTGTCTGATAGACCTCAGGCTTTCAAGGAATACACATTTTTTTTTT
174950447 BIG1 NM_006421.2 29 30 spans exon 29 and exon 30 NT_027070.3 ATTAGATGTAAGAACCAGGGGTTTAACAGTAATGTTTTTTTTTTTT
174950448 BIG1 NM_006421.2 30 31 spans exon 30 and exon 31 NT_027070.3 CCAGAACAACAGACAGAGAAAGCTGAATGGATGACATTTTTTTTTT
174950449 BIG1 NM_006421.2 31 32 spans exon 31 and exon 32 NT_027070.3 ACTGGTGTGTGCAGCAAGACAATGAGCAGTTAGCGCTTTTTTTTTT
174950450 BIG1 NM_006421.2 32 33 spans exon 32 and exon 33 NT_027070.3 AACCACAATCCCACATGCGCTGTTGACCTGGCGACCTTTTTTTTTT
174950451 BIG1 NM_006421.2 33 34 spans exon 33 and exon 34 NT_027070.3 GTAAGTGAAAAGCCATTGGATACAATATCACAGAAGTTTTTTTTTT
174950452 BIG1 NM_006421.2 34 35 spans exon 34 and exon 35 NT_027070.3 AAATTAAATCTACAGCAAAATTTCCAGAACAAAAATTTTTTTTTTT
174950453 BIG1 NM_006421.2 35 36 spans exon 35 and exon 36 NT_027070.3 AACTTAGCTGCAGCACAGAGAGATGCGGTGGACTTTTTTTTTTTTT
174950454 BIG1 NM_006421.2 36 37 spans exon 36 and exon 37 NT_027070.3 CTGCCCTGTGGAAAGCAGGATTCAAAGGCAAATCCATTTTTTTTTT
174950455 BIG1 NM_006421.2 37 38 spans exon 37 and exon 38 NT_027070.3 CCAGCAGAGGCTTTTGAATGTCTGCAGTGAAGCACTTTTTTTTTTT
174950456 BIG1 NM_006421.2 38 39 spans exon 38 and exon 39 NT_027070.3 AAGATAAGTGATAATAGGTTTAAAGCTCATGCATCATTTTTTTTTT
174950457 BIG2 NM_006420.1 1 2 spans exon 1 and exon 2 NT_011362.6 CCTGCCAGGTGGCGCTCGATGAAATTAAAGCAGAAATTTTTTTTTT
174950458 BIG2 NM_006420.1 2 3 spans exon 2 and exon 3 NT_011362.6 AGAAATAGAAAAGCAGAGGCTTGGCACTGCTGCACCTTTTTTTTTT
174950459 BIG2 NM_006420.1 3 4 spans exon 3 and exon 4 NT_011362.6 TCCCTTGACTGCTTGCAGAAACTCATCGCATACGGGTTTTTTTTTT
174950460 BIG2 NM_006420.1 4 5 spans exon 4 and exon 5 NT_011362.6 CAGTTACAAATAATTAAGGCTCTTCTGACTGCAGTGTTTTTTTTTT
174950461 BIG2 NM_006420.1 5 6 spans exon 5 and exon 6 NT_011362.6 CGCATGGAAAACCAAGTGTTGCAGGAGGCCAGAAGATTTTTTTTTT
174950462 BIG2 NM_006420.1 6 7 spans exon 6 and exon 7 NT_011362.6 GAGGCTCATCACTGTCAGGGACTGATGACGGAGCCCTTTTTTTTTT
174950463 BIG2 NM_006420.1 7 8 spans exon 7 and exon 8 NT_011362.6 TCACATCTGCCATTAAAGAAGCAGCGGAAAAGCATGTTTTTTTTTT

Total number of rows: 23107

Table truncated, full table size 2653 Kbytes.






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