GEO help: Mouse over screen elements for information.
Status
Public on Apr 12, 2010
Title
FUNDP/URBM_Brucella.melitensis.16M_v.1.0
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Brucella melitensis bv. 1 str. 16M Manufacturer
NimbleGen Systems, Inc
Manufacture protocol
Microarray design and experimentation were made by NimbleGen Systems, INC from catalogue design for B. melitensis 16M chromosomes I (NC_003317) and II (NC_003318) with 20 probes per gene (10 perfect matches and 10 mismatches). Each probe (24 mer) was replicated three times on chip (design includes random GC probes). Triplicate samples of each strain were mixed and one chip was made per strain.
Description
The design (.ndf) file and description (.ngd) file are available as Supplementary files (at the foot of this record).
Contributor(s)
Uzureau S , Lemaire J , Gaigneaux A , De Bolle X , Letesson J Citation(s)
20387905 Submission date
Aug 09, 2007
Last update date
Apr 20, 2010
Contact name
Jean-Jacques Letesson
E-mail(s)
aurelie.mirabella@fundp.ac.be Phone
0032 81724402
Fax
0032 81724297
URL
http://www.fundp.ac.be/facultes/sciences/departements/biologie/recherche/centres/urbm/ Organization name
University of Namur
Department
URBM
Street address
rue de Bruxelles, 61
City
Namur
ZIP/Postal code
5000
Country
Belgium
Samples (9)
GSM219200 , GSM219237 , GSM219239 , GSM852220 , GSM852221 , GSM852223
Series (2)
GSE8844 Quorum Sensing regulation in Brucella melitensis 16M
GSE34633 PrlR regulon in Brucella melitensis 16M
Data table header descriptions ID ORF ORF number of the gene
FUNCTION Predicted function
GENOME_ACC GenBank accession
GI number GenBank identifier
BLOCK Triplicate number (each probe was replicated three times on chip)
Data table ID ORF FUNCTION GENOME_ACC GI number BLOCK 1
BMEI0001 UROPORPHYRINOGEN DECARBOXYLASE
NC_003317
17986284
BLOCK1
2
BMEI0001 UROPORPHYRINOGEN DECARBOXYLASE
NC_003317
17986284
BLOCK2
3
BMEI0001 UROPORPHYRINOGEN DECARBOXYLASE
NC_003317
17986284
BLOCK3
4
BMEI0002 CYTOCHROME FUNCTIONING/ASSEMBLY RELATED PROTEIN
NC_003317
17986284
BLOCK1
5
BMEI0002 CYTOCHROME FUNCTIONING/ASSEMBLY RELATED PROTEIN
NC_003317
17986284
BLOCK2
6
BMEI0002 CYTOCHROME FUNCTIONING/ASSEMBLY RELATED PROTEIN
NC_003317
17986284
BLOCK3
7
BMEI0003 TRANSCRIPTION TERMINATION FACTOR RHO
NC_003317
17986284
BLOCK1
8
BMEI0003 TRANSCRIPTION TERMINATION FACTOR RHO
NC_003317
17986284
BLOCK2
9
BMEI0003 TRANSCRIPTION TERMINATION FACTOR RHO
NC_003317
17986284
BLOCK3
10
BMEI0004 Hypothetical Cytosolic Protein
NC_003317
17986284
BLOCK1
11
BMEI0004 Hypothetical Cytosolic Protein
NC_003317
17986284
BLOCK2
12
BMEI0004 Hypothetical Cytosolic Protein
NC_003317
17986284
BLOCK3
13
BMEI0005 THYMIDYLATE KINASE
NC_003317
17986284
BLOCK1
14
BMEI0005 THYMIDYLATE KINASE
NC_003317
17986284
BLOCK2
15
BMEI0005 THYMIDYLATE KINASE
NC_003317
17986284
BLOCK3
16
BMEI0006 THIOPHENE AND FURAN OXIDATION PROTEIN THDF
NC_003317
17986284
BLOCK1
17
BMEI0006 THIOPHENE AND FURAN OXIDATION PROTEIN THDF
NC_003317
17986284
BLOCK2
18
BMEI0006 THIOPHENE AND FURAN OXIDATION PROTEIN THDF
NC_003317
17986284
BLOCK3
19
BMEI0007 GLUCOSE INHIBITED DIVISION PROTEIN A
NC_003317
17986284
BLOCK1
20
BMEI0007 GLUCOSE INHIBITED DIVISION PROTEIN A
NC_003317
17986284
BLOCK2
9594 680 Kbytes .Supplementary file Size Download File type/resource GPL5730.ndf.gz
15.6 Mb
(ftp) (http) NDF
GPL5730.ngd.gz
112.3 Kb
(ftp) (http) NGD
Less...
More...