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Platform GPL5735 Query DataSets for GPL5735
Status Public on Aug 15, 2007
Title HGMP NIA 15K set, format 2
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Mus musculus
Manufacturer HGMP, Hinxton, UK
Manufacture protocol cDNA arrays (now discontinued), spotted PCR product. Bacterial source material diluted 1/10 prior to PCR,
primers: Ko forward primer (amidated): GTG TGG AAT TGT GAG CGG ATA ACA A (25mer) with 5' NH2(C6) modification.
Ko reverse primer: CCA GTC ACG ACG TTG TAA AAC GAC (24mer). Purified using Millipore Multiscreen PCR plates. Purified PCR products have then been rearrayed into 384 well plates and printed. 20µl of spotting buffer is added to 10µl of PCR product (0.1ug/ul) and this is sufficient to grid over 1000 glass arrays.
The manufacturers ask that the following paper describing the clones is cited in connection with these arrays: Tanaka TS, et al Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. PNAS (2000) 97: 9127-32
Catalog number non-commercial
Support glass
Coating aminosilane
 
Description HGMP printed NIA 15K arrays, printed on 2 slides, 17280 spots per slide, including control spots, empties and landmarks. 2 duplicate spots per slide for each clone. Earlier versions of these slides have already been described by platform entries GPL5457 and GPL5458. However, owing to analysis of a later array print run by a different image analysis programme in this series of experiments, the data files present in a different clone order and it is impossible to sort them to generate the same order. Hence this new platform submission. For ease of analysis, this platform entry combines Slides one and Two, (which are always hybed in pairs with the same hybe solution anyway)
 
Contributor(s) Mansergh FC, Hurley AL, Hunter SM, Daly CS, Evans MJ
Citation(s) 10922068
Submission date Aug 13, 2007
Last update date May 29, 2008
Contact name Fiona Catherine Mansergh
E-mail(s) mansergf@tcd.ie
Phone 0035318962484
Organization name Cardiff University
Department Biosciences
Lab Prof Sir Martin Evans
Street address Museum Avenue
City Cardiff
State/province Wales
ZIP/Postal code CF10 3US
Country United Kingdom
 
Samples (18) GSM217370, GSM217371, GSM217372, GSM217373, GSM217374, GSM217392 
Series (1)
GSE8766 Early embryoid body differentiation

Data table header descriptions
ID
Gene identifier GenBank accession number, or spot identifier (landmark, EMPTY, etc)
CLONE_ID EST name
SPOT_ID spot identifiers: control, empty

Data table
ID Gene identifier CLONE_ID SPOT_ID
HG2NIA1 landing light --CONTROL
HG2NIA2 hhhhhM27938 --CONTROL
HG2NIA3 hhhhhD45022 --CONTROL
HG2NIA4 hhhhhM26926 --CONTROL
HG2NIA5 hhhhhM36780 --CONTROL
HG2NIA6 hhhhhM61737 --CONTROL
HG2NIA7 hhhhhM87863 --CONTROL
HG2NIA8 hhhhhM98454 --CONTROL
HG2NIA9 gggggempty --EMPTY
HG2NIA10 gggggempty --EMPTY
HG2NIA11 gggggempty --EMPTY
HG2NIA12 gggggempty --EMPTY
HG2NIA13 hhhhhU47810 --CONTROL
HG2NIA14 hhhhhU49720 --CONTROL
HG2NIA15 hhhhhX04752 --CONTROL
HG2NIA16 hhhhhX57497 --CONTROL
HG2NIA17 hhhhhX61600 --CONTROL
HG2NIA18 hhhhhX74342 --CONTROL
HG2NIA19 hhhhhZ46663 --CONTROL
HG2NIA20 landing light --CONTROL

Total number of rows: 34560

Table truncated, full table size 1049 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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