GEO help: Mouse over screen elements for information.
Status
Public on Jan 18, 2004
Title
UCSF elegans2b 20K array
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Caenorhabditis elegans
Description
We used the Research Genetix primer pair set to create almost 20 thousand PCR products, using C. elegans genomic DNA as template. We printed these PCR products at high density on polylysine-coated glass slides, closely adhering to protocols available at http://microarrays.org.
Contributor(s)
Murphy CT , McCarroll SA , Dillin A , Lehrer-Graiwer J Submission date
Nov 11, 2003
Last update date
May 26, 2005
Contact name
Coleen T Murphy
E-mail(s)
cmurphy@worms.ucsf.edu Phone
415-341-8864
Organization name
University of California, San Francisco
Department
Biochemistry Department
Lab
Kenyon lab
Street address
City
San Francisco
State/province
CA
ZIP/Postal code
94143
Country
USA
Samples (7)
GSM12883 , GSM12884 , GSM12885 , GSM12886 , GSM12887 , GSM12888
Series (1)
GSE832 Adult aging in C. elegans
Data table header descriptions ID Genepairs_name Research Genetix name for this primer pair
CLONE_ID Gene we expect this probe to interrogate (based on our analysis of primer sequence)
SPOT_ID Spot identifier
Forward_primer Sequence of forward primer used to make PCR amplicon probe
Reverse_primer Sequence of reverse primer used to make PCR amplicon probe
Data table ID Genepairs_name CLONE_ID SPOT_ID Forward_primer Reverse_primer 1.1.1
F25F1.1
F25F1.1 AAATCAAACCGTTTCAGGAAAAT
ATTCTGAAAGTGTTCTGACCCAA
1.1.10
C06E8.4
C06E8.4 TTGGCTATAGTGGACCAGGG
TTCGACAAGGAGATCCCATC
1.1.11
Y39A1A.21
Y39A1A.21 GTCACAAATGGCTTATCAGATCC
TTCTCCGAGTTGTTTTTCAATGT
1.1.12
C18H7.4
C18H7.4 CAGGAGCATACGGGACAGTT
CATAGTGCTCTCAAACGGCA
1.1.13
C49H3.1
C49H3.1 CACCGGAAATGCTCAAAAAT
CATTTGACAATACGCCGCTA
1.1.14
B0035.1
B0035.1b CATAATTCGTGCGGGACTCT
TGATCAAATCGGCTACCTCC
1.1.15
Y116A8A.7
Y116A8A.7 CGTTTCAAAGATTCCCTAAACCT
ACAATCTGAAACCGACTTTGCTA
1.1.16
K04F1.11
K04F1.11 CTTAGGCGTAGGCTTAGGAAAAG
TTCTTGAAGCTTTGGGTACAAAC
1.1.17
C18G1.4
C18G1.4b TCGCAAGCCATATCATTCAA
GGAGTAGCAAGAGGCACTGG
1.1.18
D1014.6
D1014.6 TGGAACAATAACCGCACTGA
GATTTTCTCCGGTCGAATGA
1.1.19
F35B12.3
F35B12.3 CACAATTTGTCACTGGGTAAACA
TATATTCTTGGCAAGGAACGAAA
1.1.2
K07G5.3
K07G5.3 GTGGATCGTCAGCCAAGAAT
TACCGTCTTTCCTCATTGGC
1.1.20
T06E6.4
T06E6.4 GGAATTCAATCTAACTGTGCTGG
CCACCAGGCTCATATATTCCATA
1.1.21
Y51A2D.13
Y51A2D.13 AAATTCCTTCAATTTCATCGGTT
AGTAGGAAAATCCCGAAAAGTTG
1.1.22
W05H7.1
W05H7.1 ATGGAGGTCTACCAATCCAATTT
TTTGAGGTGAAACTTTGGAAAAA
1.1.23
R173.2
F08G12.6 TAATACTTTGTCGCGTATCCGTT
TCCGTCGACTATTTGGAAAGTAA
1.1.24
T08D10.2
T08D10.2 AAACTCAAAAACACACCGCC
TGTGCCAGTTGGTGACGTAT
1.1.25
ZK813.3
ZK813.3 CGTCACACAAGAAATAATCACGA
TGGACCTGGTATGCTTTAAGAAA
1.1.3
F32B4.6
F32B4.6 GCTGGAGATCATCGGAAAAA
CTGGAACAGAGTCGGACCAT
1.1.4
Y48G8A_3304.a
Y48G8AL.6 TTACATATAACAACCGGTCCCAG
AAATTCGGTGTTTTCTGAGTTGA
20000 1361 Kbytes .Supplementary data files not provided
Less...
More...