GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Platform GPL5766 Query DataSets for GPL5766
Status Public on Aug 24, 2007
Title Affymetrix GeneChip Mouse Genome 430 2.0 Array [CDF: Mm_ENTREZG_9]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol This array is identical to GPL1261 but a custom, remapped CDF environment is used to extract data. This is version 9 of the remapped CDF. The CDF for various platforms can be found at the link below.
Description CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan.
Oligonucleotide probes on GeneChips were reorganized based on the latest genome and transcriptome information. In this particular case the Entrez Gene database (build: 05/04/2006) was used as source.
For the CDF file based on Entrez Gene:
A probe must hit only one genomic location;
Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set;
Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon.
For detailed description please see the paper and website.
Web link
Citation(s) 16284200
Submission date Aug 22, 2007
Last update date Jan 17, 2013
Contact name Guido Hooiveld
Organization name Wageningen University
Department Div. Human Nutrition & Health
Lab Nutrition, Metabolism & Genomics Group
Street address HELIX, Stippeneng 4
City Wageningen
ZIP/Postal code NL-6708WE
Country Netherlands
Samples (24) GSM211635, GSM211636, GSM211637, GSM211638, GSM211639, GSM211640 
Series (1)
GSE8524 Short-term high fat-feeding results in morphological and metabolic adaptations in the skeletal muscle of C57BL/6J mice
Alternative to GPL1261 (Alternative CDF [official])

Data table header descriptions
ORF EntrezGene ID

Data table
ID Gene_ID ORF Description SPOT_ID
100012_at 100012 OOG3 oogenesin 3
100017_at 100017 LDLRAP1 low density lipoprotein receptor adaptor protein 1
100019_at 100019 MDN1 midasin homolog (yeast)
100061_at 100061 LRRC19 leucine rich repeat containing 19
100066_at 100066 CYP2J11 cytochrome P450, family 2, subfamily j, polypeptide 11
100072_at 100072 CAMTA1 calmodulin binding transcription activator 1
100087_at 100087 KTI12 KTI12 homolog, chromatin associated (S. cerevisiae)
100088_at 100088 RCC1 regulator of chromosome condensation 1
100090_at 100090 ZBTB48 zinc finger and BTB domain containing 48
100102_at 100102 PCSK9 proprotein convertase subtilisin/kexin type 9
100121_at 100121 TDRD7 tudor domain containing 7
100129_at 100129 GPR153 G protein-coupled receptor 153
100163_at 100163 PAFAH2 platelet-activating factor acetylhydrolase 2
100169_at 100169 PHACTR4 phosphatase and actin regulator 4
100177_at 100177 ZMYM6 zinc finger, MYM-type 6
100198_at 100198 H6PD hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
100201_at 100201 TMEM64 transmembrane protein 64
100206_at 100206 ADPRHL2 ADP-ribosylhydrolase like 2
100210_at 100210 ATPBD1B ATP binding domain 1 family, member B
100213_at 100213 RUSC2 RUN and SH3 domain containing 2

Total number of rows: 16361

Table truncated, full table size 932 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL5766_DESCRIPTION.txt.gz 395 b (ftp)(http) TXT
GPL5766_INDEX.txt.gz 112 b (ftp)(http) TXT
GPL5766_geometry.R.gz 277 b (ftp)(http) R
GPL5766_geometry.Rd.gz 454 b (ftp)(http) RD
GPL5766_mm430mmentrezgcdf.Rd.gz 158 b (ftp)(http) RD
GPL5766_mm430mmentrezgcdf.rda.gz 1.6 Mb (ftp)(http) RDA
GPL5766_mm430mmentrezgdim.Rd.gz 160 b (ftp)(http) RD
GPL5766_zzz.R.gz 191 b (ftp)(http) R

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap