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Platform GPL5811 Query DataSets for GPL5811
Status Public on Sep 06, 2007
Title [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description The GeneChip® Mouse Promoter 1.0R Array is designed for chromatin immunoprecipitation (ChIP) experiments. The Mouse Promoter 1.0R Array is a single array comprised of over 4.6 million probes tiled to interrogate over 28,000 mouse promoter regions. Sequences used in the design of the Mouse Promoter 1.0R Array were selected from NCBI mouse genome assembly (version 33). Repetitive elements were removed by RepeatMasker. Promoter regions were selected using sequence information from:

33,559 ENSEMBL genes (version 30_33f March 23, 2005)
18,167 RefSeq mRNAs (NCBI GenBank® April 7, 2005)
27,707 complete-CDS mRNAs (NCBI GenBank® April 7, 2005)

The sequences selected for the Mouse Promoter 1.0R Array are a subset of the content used in the whole-genome ChIP array set, the Mouse Tiling 2.0R Array Set.

Probes are tiled at an average resolution of 35 base pairs, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 base pairs between probes. Each promoter region covers approximately 6 kb upstream through 2.5 kb downstream of 5' transcription start sites.

BPMAP and other files can be downloaded from the Affymetrix Web site below.

 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=mupromoter
http://www.affymetrix.com/support/technical/libraryfileupdatesmain.affx
Submission date Sep 06, 2007
Last update date Oct 14, 2014
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (469) GSM228764, GSM279656, GSM279657, GSM279658, GSM279659, GSM279660 
Series (67)
GSE9011 Genome-wide in vivo binding analysis for PU.1 in RAW264.7 macrophages
GSE11062 Genome-Wide Gli3 Binding Sites in the E11.5 Mouse Limb Bud
GSE11077 A Genome-Scale Analysis of the Cis-Regulatory Circuitry Underlying Hedgehog Mediated Patterning of the Mammalian Limb

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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