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Status
Public on Dec 13, 2007
Title
Illumina ratRef-12 v1.0 expression beadchip
Technology type
oligonucleotide beads
Distribution
commercial
Organism
Rattus norvegicus Manufacturer
Illumina Inc.
Manufacture protocol
see manufacturer's website
Description
The RatRef-12 Expression BeadChip includes twelve genome-scale, gene expression microarrays built using Illumina’s multi-sample Array of Arrays format. BeadChip content (22,523 probes per array) was selected from theNational Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) database.http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/spreadsheet.html
Submission date
Nov 08, 2007
Last update date
Jul 29, 2014
Organization
Illumina Inc.
E-mail(s)
expression@illumina.com, techsupport@illumina.com Phone
1 800 809 4566
URL
http://www.illumina.com Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Samples (2934)
GSM266857 , GSM266858 , GSM266859 , GSM266860 , GSM266861 , GSM266862
GSM266863 ,
GSM266864 ,
GSM266865 ,
GSM266866 ,
GSM266867 ,
GSM266868 ,
GSM266869 ,
GSM266870 ,
GSM266871 ,
GSM266872 ,
GSM266873 ,
GSM266874 ,
GSM266875 ,
GSM266876 ,
GSM266877 ,
GSM266878 ,
GSM266879 ,
GSM266880 ,
GSM266881 ,
GSM266882 ,
GSM266883 ,
GSM266884 ,
GSM266885 ,
GSM266886 ,
GSM291433 ,
GSM291434 ,
GSM291436 ,
GSM291437 ,
GSM291438 ,
GSM291440 ,
GSM291441 ,
GSM291442 ,
GSM291443 ,
GSM291444 ,
GSM291446 ,
GSM291447 ,
GSM307098 ,
GSM307099 ,
GSM307100 ,
GSM307101 ,
GSM307102 ,
GSM307103 ,
GSM307104 ,
GSM307105 ,
GSM307106 ,
GSM307107 ,
GSM307108 ,
GSM307109 ,
GSM340142 ,
GSM340143 ,
GSM340144 ,
GSM340145 ,
GSM340146 ,
GSM340147 ,
GSM340148 ,
GSM340149 ,
GSM340150 ,
GSM340151 ,
GSM340152 ,
GSM340153 ,
GSM343013 ,
GSM343014 ,
GSM343015 ,
GSM343016 ,
GSM343017 ,
GSM343018 ,
GSM343019 ,
GSM343020 ,
GSM343021 ,
GSM343022 ,
GSM343465 ,
GSM343468 ,
GSM343470 ,
GSM343887 ,
GSM343888 ,
GSM343889 ,
GSM343890 ,
GSM343892 ,
GSM343893 ,
GSM343895 ,
GSM343898 ,
GSM343900 ,
GSM343902 ,
GSM343905 ,
GSM343906 ,
GSM343907 ,
GSM343910 ,
GSM343913 ,
GSM426748 ,
GSM426749 ,
GSM426750 ,
GSM426751 ,
GSM426752 ,
GSM426753 ,
GSM426754 ,
GSM426755 ,
GSM426756 ,
GSM426757 ,
GSM426784 ,
GSM426785 ,
GSM426786 ,
GSM426787 ,
GSM426788 ,
GSM426789 ,
GSM426790 ,
GSM426791 ,
GSM426792 ,
GSM426793 ,
GSM426794 ,
GSM426795 ,
GSM426796 ,
GSM426797 ,
GSM426798 ,
GSM426799 ,
GSM426800 ,
GSM429920 ,
GSM429922 ,
GSM429923 ,
GSM429924 ,
GSM429925 ,
GSM429926 ,
GSM429927 ,
GSM429928 ,
GSM429929 ,
GSM429930 ,
GSM429931 ,
GSM429932 ,
GSM429933 ,
GSM429934 ,
GSM429935 ,
GSM429936 ,
GSM429937 ,
GSM429938 ,
GSM429939 ,
GSM429940 ,
GSM429941 ,
GSM429942 ,
GSM429943 ,
GSM429944 ,
GSM440891 ,
GSM440892 ,
GSM440893 ,
GSM440894 ,
GSM440895 ,
GSM440896 ,
GSM440897 ,
GSM440898 ,
GSM440899 ,
GSM440900 ,
GSM440901 ,
GSM440902 ,
GSM440903 ,
GSM440904 ,
GSM440905 ,
GSM440906 ,
GSM440908 ,
GSM440909 ,
GSM440914 ,
GSM440915 ,
GSM440916 ,
GSM440917 ,
GSM440918 ,
GSM440919 ,
GSM440920 ,
GSM453446 ,
GSM453447 ,
GSM453448 ,
GSM453449 ,
GSM453450 ,
GSM453451 ,
GSM453452 ,
GSM453453 ,
GSM453454 ,
GSM453455 ,
GSM453456 ,
GSM453457 ,
GSM453458 ,
GSM453459 ,
GSM453460 ,
GSM453461 ,
GSM453462 ,
GSM453463 ,
GSM453464 ,
GSM453465 ,
GSM453466 ,
GSM453467 ,
GSM453468 ,
GSM453469 ,
GSM453470 ,
GSM453471 ,
GSM453472 ,
GSM453473 ,
GSM453474 ,
GSM453475 ,
GSM453476 ,
GSM453477 ,
GSM453478 ,
GSM453479 ,
GSM453480 ,
GSM453481 ,
GSM453482 ,
GSM453483 ,
GSM453484 ,
GSM453485 ,
GSM453486 ,
GSM453487 ,
GSM453488 ,
GSM453489 ,
GSM453490 ,
GSM453491 ,
GSM453492 ,
GSM453493 ,
GSM453494 ,
GSM453495 ,
GSM453496 ,
GSM453497 ,
GSM453498 ,
GSM453499 ,
GSM453500 ,
GSM453501 ,
GSM453502 ,
GSM453503 ,
GSM453504 ,
GSM453505 ,
GSM453506 ,
GSM453507 ,
GSM453508 ,
GSM453509 ,
GSM453510 ,
GSM453511 ,
GSM453512 ,
GSM453513 ,
GSM453514 ,
GSM453515 ,
GSM453516 ,
GSM453517 ,
GSM453518 ,
GSM453519 ,
GSM453520 ,
GSM453521 ,
GSM453522 ,
GSM453523 ,
GSM453524 ,
GSM453525 ,
GSM453526 ,
GSM453527 ,
GSM453528 ,
GSM453529 ,
GSM453530 ,
GSM453531 ,
GSM453532 ,
GSM453533 ,
GSM453534 ,
GSM453535 ,
GSM453536 ,
GSM453537 ,
GSM453538 ,
GSM453539 ,
GSM453540 ,
GSM453541 ,
GSM453542 ,
GSM453543 ,
GSM453544 ,
GSM453545 ,
GSM453546 ,
GSM453547 ,
GSM453548 ,
GSM453549 ,
GSM453550 ,
GSM453551 ,
GSM453552 ,
GSM466551 ,
GSM466552 ,
GSM466553 ,
GSM466554 ,
GSM466555 ,
GSM466556 ,
GSM466557 ,
GSM466558 ,
GSM466559 ,
GSM466560 ,
GSM466561 ,
GSM466562 ,
GSM467052 ,
GSM467053 ,
GSM467054 ,
GSM467055 ,
GSM467056 ,
GSM467057 ,
GSM467058 ,
GSM467059 ,
GSM467060 ,
GSM467061 ,
GSM467062 ,
GSM467063 ,
GSM471590 ,
GSM471591 ,
GSM471592 ,
GSM471593 ,
GSM471594 ,
GSM471595 ,
GSM471596 ,
GSM471597 ,
GSM471598 ,
GSM471599 ,
GSM471600 ,
GSM471601 ,
GSM471602 ,
GSM471603 ,
GSM471604 ,
GSM471605 ,
GSM471606 ,
GSM471607 ,
GSM471608 ,
GSM471609 ,
GSM471610 ,
GSM493239 ,
GSM493240 ,
GSM493241 ,
GSM493242 ,
GSM493243 ,
GSM493244 ,
GSM493245 ,
GSM493246 ,
GSM493247 ,
GSM493248 ,
GSM493249 ,
GSM493250 ,
GSM496385 ,
GSM496386 ,
GSM496387 ,
GSM496388 ,
GSM496389 ,
GSM496390 ,
GSM496391 ,
GSM496392 ,
GSM496393 ,
GSM496394 ,
GSM496395 ,
GSM496396 ,
GSM496397 ,
GSM496398 ,
GSM496399 ,
GSM496400 ,
GSM496401 ,
GSM496402 ,
GSM496404 ,
GSM496405 ,
GSM496406 ,
GSM496407 ,
GSM496408 ,
GSM496409 ,
GSM496410 ,
GSM496411 ,
GSM496412 ,
GSM496413 ,
GSM496414 ,
GSM496415 ,
GSM496416 ,
GSM496417 ,
GSM496418 ,
GSM496419 ,
GSM496420 ,
GSM496421 ,
GSM539275 ,
GSM539276 ,
GSM539277 ,
GSM539278 ,
GSM539279 ,
GSM539280 ,
GSM539281 ,
GSM539282 ,
GSM539283 ,
GSM539284 ,
GSM539285 ,
GSM539286 ,
GSM539287 ,
GSM539288 ,
GSM539289 ,
GSM539290 ,
GSM539291 ,
GSM539292 ,
GSM539293 ,
GSM539294 ,
GSM539295 ,
GSM539296 ,
GSM539297 ,
GSM539298 ,
GSM539299 ,
GSM539300 ,
GSM539301 ,
GSM539302 ,
GSM539303 ,
GSM539304 ,
GSM539305 ,
GSM539306 ,
GSM539307 ,
GSM539308 ,
GSM539309 ,
GSM566465 ,
GSM566466 ,
GSM566467 ,
GSM566468 ,
GSM566469 ,
GSM566470 ,
GSM566471 ,
GSM566472 ,
GSM566485 ,
GSM566486 ,
GSM566487 ,
GSM566488 ,
GSM566489 ,
GSM566490 ,
GSM566491 ,
GSM566492 ,
GSM566493 ,
GSM566494 ,
GSM566495 ,
GSM566496 ,
GSM566497 ,
GSM566498 ,
GSM580311 ,
GSM580312 ,
GSM580313 ,
GSM580314 ,
GSM580315 ,
GSM580316 ,
GSM580317 ,
GSM580318 ,
GSM580319 ,
GSM580320 ,
GSM580321 ,
GSM580322 ,
GSM580323 ,
GSM580324 ,
GSM580325 ,
GSM580326 ,
GSM580327 ,
GSM580328 ,
GSM580329 ,
GSM580330 ,
GSM580331 ,
GSM580332 ,
GSM580333 ,
GSM580334 ,
GSM596006 ,
GSM596007 ,
GSM596008 ,
GSM596009 ,
GSM596010 ,
GSM596011 ,
GSM596012 ,
GSM596013 ,
GSM596014 ,
GSM596015 ,
GSM596016 ,
GSM596017 ,
GSM596018 ,
GSM596019 ,
GSM596020 ,
GSM596021 ,
GSM596022 ,
GSM596023 ,
GSM596024 ,
GSM596025 ,
GSM596026 ,
GSM596027 ,
GSM596028 ,
GSM596029 ,
GSM596030 ,
GSM596031 ,
GSM596032 ,
GSM596033 ,
GSM596034 ,
GSM596035 ,
GSM596036 ,
GSM610956 ,
GSM610957 ,
GSM610958 ,
GSM610959 ,
GSM610960 ,
GSM610961 ,
GSM610962 ,
GSM610963 ,
GSM610964 ,
GSM630720 ,
GSM630721 ,
GSM630722 ,
GSM630723 ,
GSM630724 ,
GSM630725 ,
GSM630726 ,
GSM630727 ,
GSM630728 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (140)
GSE10581 Nrf2-related oxidative stress response and impaired dopamine biosynthesis in a PC12 cell model of Huntington’s disease
GSE11574 The responses of astrocytes stimulated by extracellular a-synuclein
GSE12206 Genome-wide analysis of mechano-responsive gene expression by tenocytes in fascicles subjected to cyclic tensile strain
GSE13499 Transcriptome responses of duodenal epithelial cells to endurance swimming in female rats.
GSE13607 Basal gene expression of primary osteoblasts
GSE13610 Basal gene expression in bone (mice and rat)
GSE13676 Gene Expression Analysis in an Animal Model of Cortical Dysplasia-CONTROL GROUP
GSE13697 Gene Expression Analysis in an Animal Model of Cortical Dysplasia-IRRADIATED GROUP
GSE17050 Gene expression profiling in Wistar male rat left ventricle with chronic and severe aortic valve regurgitation
GSE17059 Gene expression in adipose tissue and liver from a spontaneous rat model of Type 2 diabetes
GSE17060 Expression in adipose tissue and liver from a spontaneous rat model of Type 2 diabetes
GSE17190 Skeletal muscle characteristics of inherited low and high aerobic exercise capacity
GSE17662 Modulation of gene expression by rapamycin in hepatic cell lines, H5D and GN5
GSE17665 Methamphetamine preconditioning responses to methamphetamine-induced injury in the rat ventral midbrain
GSE17677 Modulation of gene expression by rapamycin in hepatic cell lines
GSE18133 Genome-wide analysis of gene expression in colon and brain during the suckling period.
GSE18812 Comparative genome analysis of exosomal mRNA derived from Tspan8-overexpressing and Tspan8-negative rat pancreas tumors
GSE18845 Rapamycin effect on gene expression: dependence on c-Myc
GSE19057 Gene expression profile of liver tissue in low-dose, repeated diethylnitrosamine (DEN)-treated rat treated with erlotinib
GSE19748 Gene expression screening during early granulation tissue formation (I)
GSE19749 Gene expression screening during early granulation tissue formation (II)
GSE19867 Whole brains and frontal lobes of rat offsprings exposed perinatally to low doses of 2,2',4,4'-tetrabromodiphenyl ether
GSE19868 Liver of rat offsprings exposed perinatally to low doses of 2,2',4,4'-tetrabromodiphenyl ether
GSE21600 Time course study of experimental cardiac hypertrophy in rat
GSE22894 NRSF mediated epigenetic mechanisms of ion channel dysfunction in experimental temporal lobe epilepsy [Control vs. Kainate, NRSE ODNs]
GSE22896 NRSF mediated epigenetic mechanisms of ion channel dysfunction in experimental temporal lobe epilepsy [Control vs. Kainate, scrambled ODNs]
GSE22897 NRSF mediated epigenetic mechanisms of ion channel dysfunction in experimental temporal lobe epilepsy [Kainate, NRSE ODNs vs. Kainate, scrambled ODNs]
GSE22899 NRSF mediated epigenetic mechanisms of ion channel dysfunction in experimental temporal lobe epilepsy
GSE23651 Global transcriptomic profiling of permanent focal ischemia in an in vivo rat model
GSE24233 Transcriptome profiling in 6-hydroxydopamine hemiparkinsonian rats reveals methamphetamine-mediated dopamine-independent changes in striatal gene expression.
GSE24821 Retinoid X receptor gamma signaling accelerates CNS remyelination
GSE25670 p38 regulated genes in rat myelinating glia
GSE25676 Global gene regulation in permanent focal ischemia in an in vivo rat model
GSE25929 Sex-biased suppression of chemically induced neural carcinogenesis in congenic BDIX-BDIV-Mss4a rats
GSE26532 Neuron-released α-synuclein is an endogenous ligand of TLR2 for paracrine activation of microglia
GSE27023 Blood gene expression profile of control and crystalline silica exposed rats
GSE27065 Differential gene expression from microarray analysis distinguishes woven and lamellar bone formation in the rat ulna following mechanical loading
GSE27274 Fibrinogen is upregulated following kidney damage and protects it against ischemia-reperfusion injury
GSE27620 CHD5, A Brain-Specific Chromatin Remodeling Enzyme, Regulates Expression Of Neuronal Genes.
GSE27638 Gene expression profile of hepatocellular carcinoma in low-dose, repeated diethylnitrosamine (DEN)-treated rat treated with erlotinib
GSE27641 EGFR inhibition prevents liver cirrhosis and hepatocellular carcinoma
GSE27725 Genome-wide analysis of perinatal effect of nitric oxide (NO) donor molsidomine on the kidneys of Fawn-Hooded Hypertensive (FHH) rats at different ages
GSE29296 Multiple oxygen tension environments reveal diverse patterns of transcriptional regulation in primary astrocytes
GSE30178 Mechanisms of crystalline silica-induced pulmonary toxicity revealed by global gene expression profiling (rat lungs)
GSE30216 Mechanisms of crystalline silica-induced pulmonary toxicity revealed by global gene expression profiling
GSE30301 Skeletal Muscle Contraction Reduces Effects of Unloading on Bone Independently from the Central Nervous System: Studies Using Functional Electrical Stimulation after Spinal Cord Transection
GSE31081 Methamphetamine administration causes differential alterations in gene expression and dynamic patterns of histone acetylation/hypoacetylation in the rat nucleus accumbens
GSE32147 Molecular insights into the progression of crystalline silica-induced pulmonary toxicity in rats
GSE32459 Dioxin effect on the pituitary and hypothalamic expression of genes in male fetal Wistar rats
GSE32622 In utero allergen exposure reprograms primary developmental patterns of lung gene expression and influences respiratory phenotype in rat models of asthma susceptibility.
GSE32869 Genome-wide time series analysis of gastrin induced gene expression in AR42J cells with and without protein synthesis
GSE35088 Regulation of gene expression with thyorid hormone in rats with myocardial infarction
GSE36122 Platelet-derived growth factor-alpha (PDGF-α) stimulates intestinal epithelial cell turnover after massive small bowel resection in a rat
GSE36144 Characterization of chemically induced malignant peripheral nerve sheath tumors (MPNSTs) in the rat by expression profiling
GSE36208 Transcriptomics Analysis of Lungs and Peripheral Blood of Crystalline Silica Exposed Rats
GSE36446 Genome-wide analysis of renal gene expression during hyperoxaluria development
GSE37260 Analysis of potential transcriptomic biomarkers for doxorubicin cardiotoxicity in peripheral blood
GSE38221 Genome wide expression analysis of the Hypothalamic control of Mammalian Puberty
GSE38223 pCREB-dependent transcriptional activation is a mediator of molecular neuroadaptations induced by methamphetamine self-administration in the rat dorsal striatum
GSE38454 Analysis of the global gene expression in VEGF-B transgenic rat hearts
GSE38455 Analysis of the global gene expression in the rat hearts transduced with adeno-associated viral vectors coding VEGF-B
GSE38457 VEGF-B in rat hearts
GSE38570 Integrated transcriptomic and epigenomic analysis of primary human lung cell differentiation (Rat)
GSE38571 Integrated transcriptomic and epigenomic analysis of primary human lung cell differentiation
GSE41262 Microarray gene expression profiles of adipose-derived mesenchymal stem cells from LEW and PVG rats upon 24h and 48h LPS stimulation
GSE41572 Molecular mechanisms of pulmonary response progression in crystalline silica exposed rats
GSE41579 A master cistromic circuit governing hepatic fibrogenesis [expression array]
GSE41580 A Master Cistromic Circuit Governing Hepatic Fibrogenesis
GSE41800 Rapid changes of gene expression in rat adipose tissue when food was removed
GSE41836 Estrus Synchronization and Ovarian Hyper Stimulation Treatments Have Negligible Effects on Cumulus Oocyte Complexes Gene Expression: Induction of Ovulation Causes Major Expression Changes
GSE42091 Mutant TDP-43 in Astrocytes Kills Motor Neurons in Rats through Neurotoxic Gain and Neuroprotective Loss in Astrocytes
GSE43547 Genome-wide analysis of hypothalamic gene expression in prenatally undernourished male rat offspring under high fat diet
GSE44106 MiRNA/gene profiling unveils early molecular changes and NRF2 activation in a rat model recapitulating human HCC
GSE44108 Cardiac phase-targeted dynamic load on left ventricle differentially regulates phase-sensitive gene expressions and pathway activation
GSE46267 microRNAs involved in regulating embolic stroke recovery following spontaneous reperfusion [mRNA]
GSE46269 miRNAs involved in regulating embolic stroke recovery following spontaneous reperfusion
GSE46717 Enhanced upregulation of CRH mRNA expression in the rat nucleus accumbens after a delayed second injection of methamphetamine
GSE47543 The physicochemistry of capped nanosilver predicts it biological activity in brain endothelial (RBEC4) cells
GSE48087 The Cellular and Genomic Response of Dopaminergic Neurons (N27) to Commericial “Capped” Nanosilver
GSE48100 Effect of maternal exposure to dioxin on the pituitary and hypothalamic expression of genes in PND70 male pups
GSE48802 Identification of Rat foreskin biomarkers of in utero dibutyl phthalate exposure [Illumina]
GSE48803 Identification of Rat foreskin biomarkers of in utero dibutyl phthalate exposure
GSE49144 Pulmonary toxicity and global gene expression changes in response to sub-chronic inhalation exposure to crystalline silica in rats
GSE50381 Expression data in KSHV-infected primary rat mesenchymal precursor (MM) cells
GSE50799 Genome-wide effects of maternal undernutrition
GSE51147 Expression data from rat tumors formed by 9L.EV or 9L.EGFRvIII cells
GSE53028 Parental binge alcohol abuse alters F1 generation hypothalamic gene expression in the absence of direct fetal alcohol exposure
GSE53390 Characterization of gene expression in trigeminal nerves of BDIX, BDIV, BDIX.BDIV-Mss4a and BDIX.BDIV-Mss4d rats of both sexes.
GSE53512 Fetal-Adult Cardiac Transcriptome Analysis in Rats with Contrasting Left Ventricular Mass Reveals New Candidates for Cardiac Hypertrophy
GSE53897 Genome-wide analysis of dorsal root ganglion (DRG) gene expression after morphine or oxycodone treatment
GSE54965 Early gene expression in salivary gland after isoproterenol treatment
GSE55352 Regional commonalities and specificities of age-related changes in hippocampal transcriptome.
GSE55573 Using DNA microarray to screen intracellular signal pathways of hypoglycemic activity by electroacupuncture of Zusanli (ST36) acupoints in streptozotocin-induced rats with diabetes
GSE55780 Hippocampal neurons, Illumina experiments
GSE55781 Systematic identification of 3'UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons
GSE57066 Genome-wide analysis of perinatal effect of NF-kabbaB inhibition by pyrrolidine dithiocarbamate (PDTC) on the kidneys of Fawn-Hooded Hypertensive (FHH) rats at ages 2 days, 2 weeks and adult
GSE58197 Oxidative Stress and Reduced Responsiveness of Challenged Circulating Leukocytes Following Pulmonary Instillation of Metal-Rich Particulate Matter in Rats
GSE59120 Cross-species transcriptome profiling identifies new alveolar epithelial type I cell-specific genes
GSE59164 Lipoic acid induced endoplasmic reticulum stress-mediated apoptosis in rat hepatoma cells:identification of new ER stress aggravator (ERSA)
GSE59401 Gene expression profiles of rat enamel organs (secretory--stage and maturation stage)
GSE59727 The transcriptome of TRPV1-positive sensory neurons revealed by subgroup-elimination transcriptomics
GSE60280 Genome-wide analysis of stress-exposure-associated and exposure-related individual differences associated blood gene expression in males and females.
GSE60302 Genome-wide analysis of stress-exposure-associated and exposure-related individual differences associated amygdala gene expression in males and females.
GSE60303 Genome-wide analysis of stress-exposure-associated and exposure-related individual differences associated hippocampus gene expression in males and females.
GSE60304 PTSD model
GSE61784 Gene expression profile in DRG neurons over-expressing NRG1 type III intracellular domain
GSE63004 The effects of UVB and the organic osmolyte betaine on rat epidermal keratinocytes in an organotypic culture system
GSE63561 Prenatal alcohol exposure alters steady-state and activated gene expression in the adult rat brain
GSE63726 Gene expression profiles of fractionated cells from cirrhotic rat livers
GSE64520 Molecular liver cancer prevention in cirrhosis by organ transcriptome analysis and lysophosphatidic acid pathway inhibition
GSE65051 Transcriptomic analysis of colonic epithelial cells in adult rats born with intra-uterine growth retardation.
GSE67880 Gene expression profile of liver tissue in low-dose, repeated diethylnitrosamine (DEN)-treated rat treated with epigallocatechin gallate (EGCG)
GSE68430 Molecular alterations in areas generating fast ripples in an animal model of temporal lobe epilepsy
GSE70320 Cytokeratin-19 positivity is acquired along cancer progression and does not predict cell origin in rat hepatocarcinogenesis (I)
GSE70321 Cytokeratin-19 positivity is acquired along cancer progression and does not predict cell origin in rat hepatocarcinogenesis (II)
GSE70322 Cytokeratin-19 positivity is acquired along cancer progression and does not predict cell origin in rat hepatocarcinogenesis
GSE72887 Novel RNA- and FMRP-binding protein TRF2-S regulates axonal mRNA transport and presynaptic plasticity
GSE74327 Boolean modeling reveals the necessity of transcriptional regulation for bistablity in PC12 Cell Differentiation
GSE75781 Endurance training in early life results in long-term programming of heart mass in rats
GSE77384 Genome-wide RNA expression analysis of rat dorsal root ganglion tissue after local absorbable collagen sponge implantation and BMP-2 exposure
GSE85825 MicroRNA miR-92a-2 targets TFPI2 to ameliorate oxidative stress of the hypoxia neuron [mRNA]
GSE85952 Design, characterization, and use of a novel amyloid β-protein control for assembly, neurotoxicity, and gene expression studies
GSE86034 MicroRNA miR-92a-2 targets TFPI2 to ameliorate oxidative stress of the hypoxia neuron
GSE87107 Conserved and species specific molecular denominators in mammalian aging [rat]
GSE87109 Conserved and species-specific molecular denominators in mammalian skeletal muscle aging
GSE89873 Gene expression profiling of early-activated targets of antidepressants in glia cells
GSE93645 Comparative analysis of gene expression profile of pre-defined niches within demyelinated white matter in rats
GSE101844 Integrated metabolic models for xenobiotic induced mitochondrial toxicity in skeletal muscle (compound 177 experiments)
GSE101845 Integrated metabolic models for xenobiotic induced mitochondrial toxicity in skeletal muscle (compound 197 experiments)
GSE101847 Integrated metabolic models for xenobiotic induced mitochondrial toxicity in skeletal muscle
GSE107274 The gene expression profile of rat hepatocytes grown on decelllularized liver
GSE131034 Thyroid hormone inhibits hepatocellular carcinoma progression via induction of differentiation and metabolic reprogramming
GSE134149 Genome-wide analysis of liver gene expression in prenatally undernourished male rat offspring under high-fat diet
GSE139438 Microarray Analysis of Striatal Tissue derived RNA isolated from Chronic Levodopa (L-DOPA) treated Parkinsonian and Dyskinetic (LID) Rats as compared to Parkinsonian Disease (PD) Control Rats
GSE140594 Hippocampal Gene Expression in bred High Responder (bHR) vs. bred Low Responder (bLR) Rats: Illumina Microarray Data from Generation F15
GSE140599 Hippocampal Gene Expression in bred High Responder (bHR) vs. bred Low Responder (bLR) Rats
GSE154326 Cpxm2 as a novel candidate for cardiac hypertrophy and failure in hypertension [Illumina]
GSE154327 Cpxm2 as a novel candidate for cardiac hypertrophy and failure in hypertension
GSE172109 Experience modulates the effects of histone deacetylase inhibitors on gene and protein expression in the hippocampus: Impaired plasticity in aging
GSE208009 Monoclonal Antibody to Marinobufagenin Downregulates TGFβ Profibrotic Signaling in Left Ventricle and Kidney and Reduces Tissue Remodeling in Salt‐Sensitive Hypertension [LV_Kidney]
Data table header descriptions ID Unique identifier for the probe (across all products and species)
Species Source Transcript sequence source name
Search_Key Internal id useful for custom design array
Transcript Internal transcript id
ILMN_Gene Internal gene symbol
Source_Reference_ID Id in the source database
RefSeq_ID Refseq id
Unigene_ID Unigene id
Entrez_Gene_ID Entrez gene id
GI Genbank id
Accession Genbank accession number
Symbol Gene symbol from the source database
Protein_Product Genbank protein accession number
Array_Address_Id Decoder id
Probe_Type Information about what this probe is targeting
Probe_Start Position of the probe relative to the 5' of the source transcript sequence
SEQUENCE Probe sequence
Chromosome Chromosome
Probe_Chr_Orientation Orientation on the NCBI genome built
Probe_Coordinates genomic position of the probe on the NCBI genome built
Definition Gene description from the source
Ontology_Component Cellular component annotations from Gene Ontology project
Ontology_Process Biological process annotations from Gene Ontology project
Ontology_Function Molecular function annotations from Gene Ontology project
Synonyms Gene symbol synonyms from Refseq
GB_ACC SPOT_ID
Data table ID Species Source Search_Key Transcript ILMN_Gene Source_Reference_ID RefSeq_ID Unigene_ID Entrez_Gene_ID GI Accession Symbol Protein_Product Array_Address_Id Probe_Type Probe_Start SEQUENCE Chromosome Probe_Chr_Orientation Probe_Coordinates Definition Ontology_Component Ontology_Process Ontology_Function Synonyms GB_ACC SPOT_ID ILMN_1356720
Rattus norvegicus
RefSeq
GI_62644958-S
ILMN_57573
LOC499782
XM_575115.1
XM_575115.1
499782
62644958
XM_575115.1
LOC499782
XP_575115.1
1570300
S
167
GAGAGTTGAGCTTTTCGGCCTATATCCGGCGTGGGCGGAGCAACATCCGT
3
+
11951869-11951918
PREDICTED: Rattus norvegicus similar to 60S ribosomal protein L12 (LOC499782), mRNA.
XM_575115.1
ILMN_1355539
Rattus norvegicus
RefSeq
GI_62643181-S
ILMN_58017
LOC502515
XM_577999.1
XM_577999.1
502515
62643181
XM_577999.1
LOC502515
XP_577999.1
6840575
S
4804
CACACTGCCTGGAGGGGGACAGGAAGATTGAACTGGACATCCTGGTGATG
2
+
79187406-79187455
PREDICTED: Rattus norvegicus similar to AFL095Wp (LOC502515), mRNA.
XM_577999.1
ILMN_1365415
Rattus norvegicus
RefSeq
GI_20301967-S
ILMN_297955
PRSS8
NM_138836.1
NM_138836.1
192107
20301967
NM_138836.1
Prss8
NP_620191.1
4200670
S
2079
GGTTTCACCTTCACGGGATGAGAACAAAAGGGAGCTTTGGACCTGGGGGG
1
-
187210635-187210684
Rattus norvegicus protease, serine, 8 (prostasin) (Prss8), mRNA.
integral to membrane [goid 16021] [evidence IEA]; extracellular space [goid 5615] [evidence IEA]
serine-type endopeptidase activity [goid 4252] [evidence IEA]; serine-type peptidase activity [goid 8236] [pmid 11373334] [evidence IMP]; hydrolase activity [goid 16787] [evidence IEA]; trypsin activity [goid 4295] [evidence IEA]; chymotrypsin activity [goid 4263] [evidence IEA]; peptidase activity [goid 8233] [evidence IEA]
NM_138836.1
ILMN_1373448
Rattus norvegicus
RefSeq
GI_62647669-S
ILMN_54533
WBP1
XM_216198.4
XM_216198.4
297381
109472229
XM_216198.4
Wbp1
XP_216198.3
6620576
S
1750
TAGTCAAGGAGCTGAGGGCTAGTGCCACCCAACCAGACCTGGAGGACCAT
4
-
117331447-117331496
PREDICTED: Rattus norvegicus WW domain binding protein 1 (Wbp1), mRNA.
XM_216198.4
ILMN_1353631
Rattus norvegicus
RefSeq
GI_62658996-S
ILMN_289444
COX6A1
NM_012814.1
NM_012814.1
25282
77736543
NM_012814.1
Cox6a1
NP_036946.1
730300
S
393
CCACAGCACTGATTTGGACCCTGACTCTTGTGTGTGGACCACGAAAGCCC
12
+
42532988-42533037
Rattus norvegicus cytochrome c oxidase, subunit VIa, polypeptide 1 (Cox6a1), mRNA.
membrane [goid 16020] [evidence IEA]; mitochondrion [goid 5739] [evidence IEA]; integral to membrane [goid 16021] [evidence IEA]
electron transport [goid 6118] [evidence ISS]
oxidoreductase activity [goid 16491] [evidence IEA]; cytochrome-c oxidase activity [goid 4129] [evidence ISS]
COX6AL
NM_012814.1
ILMN_2039365
Rattus norvegicus
RefSeq
GI_62656954-S
ILMN_275442
IGFBP4
NM_001004274.2
NM_001004274.2
360622
70778853
NM_001004274.2
Igfbp4
NP_001004274.1
5360327
A
959
AAGGGGGAGCTGGACTGCCACCAACTGGCTGACAGCCTCCAAGAGTGAGA
10
+
87833110-87833157:87833158-87833159
Rattus norvegicus insulin-like growth factor binding protein 4 (Igfbp4), mRNA.
extracellular region [goid 5576] [evidence IEA]; extracellular space [goid 5615] [evidence IEA]
skeletal development [goid 1501] [evidence IEA]; DNA metabolism [goid 6259] [evidence IEA]; cell proliferation [goid 8283] [evidence IEA]; regulation of cell growth [goid 1558] [evidence IEA]; signal transduction [goid 7165] [evidence IEA]
insulin-like growth factor binding [goid 5520] [evidence IEA]; growth factor binding [goid 19838] [evidence IEA]
IBP4; IGF-BP4
NM_001004274.2
ILMN_1361828
Rattus norvegicus
RefSeq
GI_16758203-S
ILMN_269790
PICK1
NM_053460.1
NM_053460.1
84591
16758203
NM_053460.1
Pick1
NP_445912.1
730072
S
1645
TGCAGGGAATGGGAGCTGGGTGGACATCCGAGGCTGTGACCAGTGTACCA
7
+
117232492-117232541
Rattus norvegicus protein interacting with C kinase 1 (Pick1), mRNA.
plasma membrane [goid 5886] [evidence ISS]; presynaptic membrane [goid 42734] [evidence ISS]; Golgi apparatus [goid 5794] [evidence ISS]; mitochondrion [goid 5739] [evidence ISS]; perinuclear region [goid 48471] [evidence ISS]
protein targeting [goid 6605] [evidence ISS]; monoamine transport [goid 15844] [evidence ISS]; receptor clustering [goid 43113] [evidence ISS]; DNA methylation during embryonic development [goid 43045] [evidence ISS]; protein homooligomerization [goid 51260] [evidence ISS]; dopamine transport [goid 15872] [evidence NAS]; development [goid 7275] [evidence ISS]; protein kinase C activation [goid 7205] [evidence ISS]; neuronal ion channel clustering [goid 45161] [evidence ISS]; DNA methylation during gametogenesis [goid 43046] [evidence ISS]; protein amino acid phosphorylation [goid 6468] [evidence ISS]; regulation of synapse structure and function [goid 50803] [evidence ISS]
ATPase activity [goid 16887] [evidence ISS]; metabotropic glutatmate receptor binding [goid 35256] [evidence TAS]; ephrin receptor binding [goid 46875] [evidence TAS]; GTPase binding [goid 51020] [evidence TAS]; protein C-terminus binding [goid 8022] [evidence ISS]; protein kinase C binding [goid 5080] [evidence ISS]; receptor tyrosine kinase binding [goid 30971] [evidence TAS]
Prkcabp
NM_053460.1
ILMN_1371132
Rattus norvegicus
RefSeq
GI_12083670-S
ILMN_302590
THEDC1
NM_022705.1
NM_022705.1
64669
12083670
NM_022705.1
Thedc1
NP_073196.1
6660377
S
1229
GGAGCATTTATCTCTCTGGGGAAAGGACACGGCTGAAGAGGCGCACAGGC
17
+
86020896-86020945
Rattus norvegicus thioesterase domain containing 1 (Thedc1), mRNA.
fatty acid biosynthesis [goid 6633] [evidence IEA]; biosynthesis [goid 9058] [evidence IEA]
thiolester hydrolase activity [goid 16790] [pmid 3632637] [evidence ISS]; hydrolase activity [goid 16787] [evidence IEA]; hydrolase activity, acting on ester bonds [goid 16788] [evidence IEA]; catalytic activity [goid 3824] [evidence IEA]
Mch
NM_022705.1
ILMN_1374582
Rattus norvegicus
RefSeq
GI_25742779-S
ILMN_296021
DBH
NM_013158.1
NM_013158.1
25699
25742779
NM_013158.1
Dbh
NP_037290.1
3170167
S
2091
GAGTCCAGATTCAACTCCACAGGACCTCCCTTGCCTCCAGAACAGCCTTA
3
+
6069665-6069714
Rattus norvegicus dopamine beta hydroxylase (Dbh), mRNA.
extracellular region [goid 5576] [evidence IEA]; membrane fraction [goid 5624] [evidence IEA]; membrane [goid 16020] [evidence IEA]; plasma membrane [goid 5886] [evidence ISS]; chromaffin granule [goid 42583] [evidence IEA]; soluble fraction [goid 5625] [evidence IEA]; cytoplasm [goid 5737] [evidence ISS]
catecholamine metabolism [goid 6584] [evidence IEA]; synaptic transmission [goid 7268] [pmid 11858766] [evidence IEP]; catecholamine biosynthesis [goid 42423] [evidence IEA]; norepinephrine biosynthesis [goid 42421] [pmid 11914591] [evidence TAS]; response to pain [goid 48265] [evidence IEA]
dopamine beta-monooxygenase activity [goid 4500] [pmid 2325165] [evidence TAS]; oxidoreductase activity [goid 16491] [evidence IEA]; copper ion binding [goid 5507] [pmid 2325165] [evidence ISS]; monooxygenase activity [goid 4497] [evidence IEA]
DOPBHY
NM_013158.1
ILMN_1359915
Rattus norvegicus
RefSeq
GI_62649883-S
ILMN_52371
LOC502991
XM_578499.1
XM_578499.1
502991
62649883
XM_578499.1
LOC502991
XP_578499.1
6840397
S
312
CACCTCCACATTCAGCGGTACACCATGAAGATGCTGAACTTCCAGGGCGC
5
+
154782593-154782642
PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310005N03 (LOC502991), mRNA.
XM_578499.1
ILMN_1366207
Rattus norvegicus
RefSeq
GI_62661954-S
ILMN_47765
LOC502011
XM_577439.1
XM_577439.1
502011
62661954
XM_577439.1
LOC502011
XP_577439.1
3290373
S
478
GCATTGTCTGGATTTCCTACGACCCCGCTCGCTTTCCGAGATACCTGCCC
15
+
36582451-36582461:36582862-36582900
PREDICTED: Rattus norvegicus similar to IL-17D (LOC502011), mRNA.
XM_577439.1
ILMN_1353331
Rattus norvegicus
RefSeq
GI_62647604-S
ILMN_51437
LOC502843
XM_578343.1
XM_578343.1
502843
62647604
XM_578343.1
LOC502843
XP_578343.1
5340142
S
205
AACTGCTTATCTATGGGGCATCCAACCGGTACACTGGAGTCCCTGATCGC
4
+
103831056-103831105
PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC502843), mRNA.
XM_578343.1
ILMN_1353943
Rattus norvegicus
RefSeq
GI_57528406-S
ILMN_264783
LRG1
NM_001009717.1
NM_001009717.1
367455
57528406
NM_001009717.1
Lrg1
NP_001009717.1
1400168
S
989
CAGAGCTGGGGACCTTGTGAGGATGGCAACTGGGGTGCGAGCCAAGGGTA
Un|NW_047865.1
+
974723-974742:974743-974772
Rattus norvegicus leucine-rich alpha-2-glycoprotein 1 (Lrg1), mRNA.
membrane [goid 16020] [evidence IEA]; extracellular region [goid 5576] [evidence IEA]; extracellular space [goid 5615] [evidence IEA]
MGC95065
NM_001009717.1
ILMN_1366701
Rattus norvegicus
RefSeq
GI_62666981-S
ILMN_290144
RGD1563383_PREDICTED
XR_007834.1
XR_007834.1
317533
109511851
XR_007834.1
RGD1563383_predicted
1580465
S
2125
CATTACCCACCTTTAGAGGCCAGACAGCAAATGCATGTTATAAGCCCAGA
X
-
46340236-46340285
PREDICTED: Rattus norvegicus similar to hypothetical protein 4930595M18 (predicted) (RGD1563383_predicted), mRNA.
XR_007834.1
ILMN_1357309
Rattus norvegicus
RefSeq
GI_13162352-S
ILMN_291360
CFI
NM_024157.1
NM_024157.1
79126
13162352
NM_024157.1
Cfi
NP_077071.1
2900176
S
1582
GAGATGCAGTGTGCGGGTACCAGTGATGGGTCCATTGATGCCTGCAAAGG
2
+
227325092-227325109
Rattus norvegicus complement factor I (Cfi), mRNA.
extracellular region [goid 5576] [evidence IEA]; membrane [goid 16020] [evidence IEA]; extracellular space [goid 5615] [evidence IEA]
complement activation [goid 6956] [evidence IEA]; complement activation, classical pathway [goid 6958] [evidence IEA]
serine-type endopeptidase activity [goid 4252] [evidence IEA]; serine-type peptidase activity [goid 8236] [evidence ISS]; hydrolase activity [goid 16787] [evidence IEA]; scavenger receptor activity [goid 5044] [evidence IEA]; trypsin activity [goid 4295] [evidence IEA]; chymotrypsin activity [goid 4263] [evidence IEA]; complement factor I activity [goid 3818] [evidence IEA]
NM_024157.1
ILMN_1350712
Rattus norvegicus
RefSeq
GI_62641152-S
ILMN_49251
USP47_PREDICTED
XM_218997.4
XM_218997.4
308896
109459235
XM_218997.4
Usp47_predicted
XP_218997.3
4780180
S
5430
CATCGTATGGAATAGTTTCTCGGGGGCCTTGGTGCAGACCTGGTGCCACA
1
+
169919812-169919861
PREDICTED: Rattus norvegicus ubiquitin specific protease 47 (predicted) (Usp47_predicted), mRNA.
XM_218997.4
ILMN_1370136
Rattus norvegicus
RefSeq
GI_62659480-S
ILMN_50037
RGL1_PREDICTED
XM_222717.4
XM_222717.4
289080
109498017
XM_222717.4
Rgl1_predicted
XP_222717.4
2810064
S
2392
AGGACAGCTAAGCGGGGCTGCTGGAGTAACAGACACAGCAAGGTCACCCT
13
-
67469699-67469748
PREDICTED: Rattus norvegicus ral guanine nucleotide dissociation stimulator,-like 1 (predicted) (Rgl1_predicted), mRNA.
XM_222717.4
ILMN_1373899
Rattus norvegicus
RefSeq
GI_9507082-S
ILMN_301015
SEMA4F
NM_019272.1
NM_019272.1
29745
9507082
NM_019272.1
Sema4f
NP_062145.1
6450402
S
3820
CCCCTTGGTTTGGAGTTCCCGGTGGCTTTGAGTAGGATCTTTGGCGTGGC
4
-
117104765-117104814
Rattus norvegicus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F (Sema4f), mRNA.
plasma membrane [goid 5886] [evidence IEA]; synapse [goid 45202] [evidence IEA]; integral to membrane [goid 16021] [evidence IEA]; postsynaptic membrane [goid 45211] [evidence IEA]; membrane fraction [goid 5624] [evidence IEA]; integral to plasma membrane [goid 5887] [evidence IEA]; integral to membrane of membrane fraction [goid 299] [evidence IEA]; synaptosome [goid 19717] [evidence IEA]
cell-cell signaling [goid 7267] [evidence IEA]; negative regulation of axon extension [goid 30517] [evidence IEA]; cell differentiation [goid 30154] [evidence IEA]; axon guidance [goid 7411] [evidence IEA]
protein binding [goid 5515] [evidence IEA]
NM_019272.1
ILMN_1360341
Rattus norvegicus
RefSeq
GI_62649471-S
ILMN_278092
LOC298442
NM_001025656.1
NM_001025656.1
298442
71043663
NM_001025656.1
LOC298442
NP_001020827.1
5340044
S
1327
GGGAACTCCAGAACAACTCCCTTTCTAACCTGGAACCCAGCAGCTCTCAG
5
+
137006761-137006763:137007447-137007493
Rattus norvegicus similar to RIKEN cDNA 0610037D15 (LOC298442), mRNA.
MGC114580
NM_001025656.1
ILMN_1530174
Rattus norvegicus
Unigene
Rn.49412
ILMN_160524
RN.49412
Rn.49412
Rn.49412
14960831
BI296422
4230017
S
36
TTCTTATTTTTCTTTCATTAGCAAACATACAAATGGGTAGAGTGAACCCT
UI-R-CV2-cgr-a-06-0-UI.s1 UI-R-CV2 Rattus norvegicus cDNA clone UI-R-CV2-cgr-a-06-0-UI 3', mRNA
Rn.49412
22523 10091 Kbytes .Supplementary file Size Download File type/resource GPL6101_Illumina_RatRef-12_V1_0_R1_11222119_A.bgx.gz
2.8 Mb
(ftp) (http) BGX
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