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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 01, 2008 |
| Title |
[Mm35b_P02R] Affymetrix Mouse Tiling 2.0R Set, Array 2 |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Mus musculus |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
See manufacturer's web site
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| Catalog number |
900852 |
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| Description |
Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html
The GeneChip® Mouse Tiling 2.0R Array Set is designed for chromatin immunoprecipitation (ChIP) experiments. This set of seven arrays contains approximately 45 million oligonucleotide probes to interrogate the mouse genome. Each array in the set contains over 6.5 million perfect match probes to specifically interrogate genomic regions.
Sequences used in the design of the Mouse Tiling 2.0R Array Set were selected from NCBI mouse genome assembly (Build 33). Repetitive elements were removed by RepeatMasker. The Mouse Tiling 2.0R Array Set is available either as a whole-genome set of seven arrays (P/N 900852), or individual arrays from the set may be purchased separately.
Probes are tiled at an average resolution of 35 base pairs, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10bp between probes. Oligonucleotide probes are synthesized in situ complementary to each corresponding sequence.
BPMAP and other files can be downloaded from the Affymetrix Web site below.
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| Web link |
http://www.affymetrix.com/products/arrays/specific/mouse_tiling_2.affx
http://www.affymetrix.com/support/technical/libraryfileupdatesmain.affx
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| Submission date |
Feb 01, 2008 |
| Last update date |
Mar 21, 2017 |
| Organization |
Affymetrix, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov, support@affymetrix.com
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| Phone |
888-362-2447
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| URL |
http://www.affymetrix.com/index.affx
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| Street address |
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| City |
Santa Clara |
| State/province |
CA |
| ZIP/Postal code |
95051 |
| Country |
USA |
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| Samples (92)
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GSM279650, GSM291464, GSM291471, GSM291478, GSM291497, GSM291504
GSM291511, GSM386189, GSM386196, GSM386203, GSM386210, GSM475213, GSM475214, GSM475215, GSM475234, GSM475235, GSM475236, GSM478764, GSM478771, GSM478778, GSM478785, GSM478792, GSM478799, GSM478805, GSM478811, GSM489825, GSM489826, GSM489827, GSM489828, GSM489829, GSM489830, GSM575816, GSM575823, GSM575830, GSM575837, GSM575844, GSM575851, GSM987687, GSM987688, GSM987689, GSM987690, GSM987691, GSM987692, GSM987693, GSM987694, GSM987695, GSM987696, GSM987697, GSM987698, GSM987699, GSM987700, GSM987701, GSM987702, GSM987703, GSM987704, GSM987705, GSM987706, GSM987707, GSM987708, GSM987709, GSM987710, GSM987711, GSM987712, GSM987713, GSM987714, GSM987715, GSM987716, GSM987717, GSM987718, GSM987719, GSM987720, GSM987721, GSM987722, GSM987723, GSM987724, GSM987725, GSM987726, GSM987727, GSM987728, GSM987729, GSM987730, GSM987731, GSM987732, GSM987733, GSM987734, GSM987735, GSM987736, GSM987737, GSM987738, GSM987739, GSM987740, GSM1826976
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| Series (13)
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| GSE11062 |
Genome-Wide Gli3 Binding Sites in the E11.5 Mouse Limb Bud |
| GSE11077 |
A Genome-Scale Analysis of the Cis-Regulatory Circuitry Underlying Hedgehog Mediated Patterning of the Mammalian Limb |
| GSE11576 |
RNA mapping and ChIP with tiling arrays in FGF-stimulated NIH3T3 cells |
| GSE15388 |
EZH1 and H3K27me3 ChIP-chip data from mouse embryonic stem cells |
| GSE19167 |
JMJ and PRC2 ChIP-chip data from mouse embryonic stem cells |
| GSE19169 |
Jumonji modulates Polycomb activity and self-renewal versus differentiation of stem cells |
| GSE19289 |
Most “dark matter” transcripts are associated with known genes |
| GSE19633 |
Comparison of the testicular transcriptome of chromosomes 2, X, Y and the mitochondrial genome between two mouse species |
| GSE23708 |
Chromatin Immunoprecipitation Analysis of Aryl Hydrocarbon Receptor Binding in a Mouse B-cell Line (CH12.LX) Activated with Lipopolysaccharide and Treated with 2,3,7,8-Tetrachlorodibenzo-p-dioxin |
| GSE40166 |
5-hmC in the brain: abundance in synaptic genes and differences at the exon-intron boundary (tiling array) |
| GSE40167 |
5-hmC in the brain: abundance in synaptic genes and differences at the exon-intron boundary |
| GSE71112 |
ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory (ChIP) |
| GSE71113 |
ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory |
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| Supplementary data files not provided |
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