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Status
Public on Feb 05, 2008
Title
Agilent-019161 D. rerio (Zebrafish) Oligo Microarray (V2) G2519F (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Danio rerio Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G2519F
Description
Submission date
Feb 05, 2008
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (474)
GSM506241 , GSM506242 , GSM506243 , GSM506244 , GSM570119 , GSM570120
GSM570121 ,
GSM570122 ,
GSM570123 ,
GSM570124 ,
GSM570125 ,
GSM570126 ,
GSM570127 ,
GSM570128 ,
GSM570129 ,
GSM570130 ,
GSM570131 ,
GSM570132 ,
GSM570133 ,
GSM570134 ,
GSM570135 ,
GSM570136 ,
GSM570137 ,
GSM570138 ,
GSM570139 ,
GSM570140 ,
GSM570141 ,
GSM570142 ,
GSM570143 ,
GSM570144 ,
GSM570145 ,
GSM606223 ,
GSM606224 ,
GSM606225 ,
GSM606226 ,
GSM606227 ,
GSM606228 ,
GSM606229 ,
GSM606230 ,
GSM606866 ,
GSM606867 ,
GSM606868 ,
GSM606869 ,
GSM606870 ,
GSM606871 ,
GSM606872 ,
GSM606873 ,
GSM606874 ,
GSM606875 ,
GSM606876 ,
GSM606877 ,
GSM606878 ,
GSM606879 ,
GSM606880 ,
GSM606881 ,
GSM606882 ,
GSM606883 ,
GSM606884 ,
GSM606885 ,
GSM606886 ,
GSM606887 ,
GSM606888 ,
GSM606889 ,
GSM606890 ,
GSM606891 ,
GSM606892 ,
GSM606893 ,
GSM606894 ,
GSM606895 ,
GSM606896 ,
GSM606897 ,
GSM606898 ,
GSM606899 ,
GSM606900 ,
GSM606901 ,
GSM606902 ,
GSM606903 ,
GSM606904 ,
GSM606905 ,
GSM606906 ,
GSM606907 ,
GSM606908 ,
GSM606909 ,
GSM606910 ,
GSM606911 ,
GSM606912 ,
GSM606913 ,
GSM606914 ,
GSM606915 ,
GSM606916 ,
GSM606917 ,
GSM606918 ,
GSM606919 ,
GSM606920 ,
GSM606921 ,
GSM606922 ,
GSM606923 ,
GSM606924 ,
GSM606925 ,
GSM606926 ,
GSM606927 ,
GSM606928 ,
GSM606929 ,
GSM606930 ,
GSM606931 ,
GSM606932 ,
GSM606933 ,
GSM606934 ,
GSM606935 ,
GSM606936 ,
GSM606937 ,
GSM606938 ,
GSM606939 ,
GSM606940 ,
GSM606941 ,
GSM606942 ,
GSM606943 ,
GSM606944 ,
GSM606945 ,
GSM606946 ,
GSM606947 ,
GSM606948 ,
GSM606949 ,
GSM606950 ,
GSM606951 ,
GSM606952 ,
GSM606953 ,
GSM606954 ,
GSM606955 ,
GSM606956 ,
GSM606957 ,
GSM606958 ,
GSM606959 ,
GSM606960 ,
GSM606961 ,
GSM606962 ,
GSM606963 ,
GSM606964 ,
GSM606965 ,
GSM606966 ,
GSM606967 ,
GSM606968 ,
GSM606969 ,
GSM606970 ,
GSM606971 ,
GSM606972 ,
GSM606973 ,
GSM606974 ,
GSM606975 ,
GSM606976 ,
GSM606977 ,
GSM606978 ,
GSM606979 ,
GSM606980 ,
GSM606981 ,
GSM606982 ,
GSM606983 ,
GSM606984 ,
GSM606985 ,
GSM606986 ,
GSM606987 ,
GSM606988 ,
GSM606989 ,
GSM606990 ,
GSM606991 ,
GSM606992 ,
GSM606993 ,
GSM606994 ,
GSM606995 ,
GSM606996 ,
GSM606997 ,
GSM606998 ,
GSM606999 ,
GSM607000 ,
GSM607001 ,
GSM607002 ,
GSM607003 ,
GSM607004 ,
GSM607005 ,
GSM607006 ,
GSM607007 ,
GSM607008 ,
GSM607009 ,
GSM607010 ,
GSM607011 ,
GSM607012 ,
GSM612962 ,
GSM612963 ,
GSM627464 ,
GSM627465 ,
GSM627466 ,
GSM627467 ,
GSM699118 ,
GSM699119 ,
GSM699120 ,
GSM699121 ,
GSM699122 ,
GSM699123 ,
GSM699124 ,
GSM700459 ,
GSM700460 ,
GSM700461 ,
GSM700910 ,
GSM700911 ,
GSM700912 ,
GSM700913 ,
GSM700914 ,
GSM700915 ,
GSM700916 ,
GSM700917 ,
GSM700918 ,
GSM700919 ,
GSM700920 ,
GSM700921 ,
GSM700922 ,
GSM700923 ,
GSM700924 ,
GSM700925 ,
GSM700926 ,
GSM700927 ,
GSM700928 ,
GSM700929 ,
GSM700930 ,
GSM700931 ,
GSM700932 ,
GSM700933 ,
GSM700934 ,
GSM700935 ,
GSM700936 ,
GSM700937 ,
GSM700938 ,
GSM700939 ,
GSM700940 ,
GSM700941 ,
GSM700942 ,
GSM700943 ,
GSM788247 ,
GSM788248 ,
GSM788249 ,
GSM788250 ,
GSM796301 ,
GSM796302 ,
GSM796303 ,
GSM796304 ,
GSM796305 ,
GSM796306 ,
GSM796307 ,
GSM796308 ,
GSM796309 ,
GSM796310 ,
GSM796311 ,
GSM796312 ,
GSM796313 ,
GSM796314 ,
GSM796315 ,
GSM796316 ,
GSM796317 ,
GSM796318 ,
GSM796319 ,
GSM796320 ,
GSM796321 ,
GSM796322 ,
GSM796323 ,
GSM796324 ,
GSM796325 ,
GSM796326 ,
GSM796327 ,
GSM808893 ,
GSM808894 ,
GSM808895 ,
GSM808896 ,
GSM808897 ,
GSM808898 ,
GSM808899 ,
GSM808900 ,
GSM808901 ,
GSM808902 ,
GSM808903 ,
GSM808904 ,
GSM839740 ,
GSM839741 ,
GSM839742 ,
GSM839743 ,
GSM839744 ,
GSM839745 ,
GSM839746 ,
GSM851948 ,
GSM851949 ,
GSM851950 ,
GSM851951 ,
GSM851952 ,
GSM851953 ,
GSM851954 ,
GSM851955 ,
GSM851956 ,
GSM851957 ,
GSM851958 ,
GSM851959 ,
GSM851960 ,
GSM851961 ,
GSM851962 ,
GSM851963 ,
GSM874269 ,
GSM874270 ,
GSM874271 ,
GSM874272 ,
GSM942059 ,
GSM942060 ,
GSM942061 ,
GSM942062 ,
GSM942063 ,
GSM942064 ,
GSM942065 ,
GSM942066 ,
GSM942067 ,
GSM942068 ,
GSM942069 ,
GSM942070 ,
GSM957340 ,
GSM957341 ,
GSM957447 ,
GSM957448 ,
GSM957449 ,
GSM957450 ,
GSM957451 ,
GSM957452 ,
GSM997933 ,
GSM997934 ,
GSM997935 ,
GSM997936 ,
GSM997937 ,
GSM997938 ,
GSM997939 ,
GSM997940 ,
GSM997941 ,
GSM997942 ,
GSM997943 ,
GSM997944 ,
GSM997945 ,
GSM997946 ,
GSM997947 ,
GSM997948 ,
GSM997949 ,
GSM997950 ,
GSM997951 ,
GSM997952 ,
GSM997953 ,
GSM997954 ,
GSM997955 ,
GSM997956 ,
GSM997957 ,
GSM997958 ,
GSM997959 ,
GSM997960 ,
GSM997961 ,
GSM997962 ,
GSM1049609 ,
GSM1049610 ,
GSM1049611 ,
GSM1049612 ,
GSM1049613 ,
GSM1049614 ,
GSM1049615 ,
GSM1049616 ,
GSM1049617 ,
GSM1049618 ,
GSM1049619 ,
GSM1049620 ,
GSM1049621 ,
GSM1049622 ,
GSM1049623 ,
GSM1049624 ,
GSM1049625 ,
GSM1049626 ,
GSM1049627 ,
GSM1049628 ,
GSM1049629 ,
GSM1049630 ,
GSM1049631 ,
GSM1049632 ,
GSM1049633 ,
GSM1049634 ,
GSM1049635 ,
GSM1049636 ,
GSM1163933 ,
GSM1163934 ,
GSM1163935 ,
GSM1163936 ,
GSM1202792 ,
GSM1202793 ,
GSM1202794 ,
GSM1202795 ,
GSM1202796 ,
GSM1202797 ,
GSM1202798 ,
GSM1202799 ,
GSM1202800 ,
GSM1202801 ,
GSM1202802 ,
GSM1202803 ,
GSM1249053 ,
GSM1249054 ,
GSM1249055 ,
GSM1249056 ,
GSM1249057 ,
GSM1249058 ,
GSM1249059 ,
GSM1249060 ,
GSM1249061 ,
GSM1249062 ,
GSM1249063 ,
GSM1249064 ,
GSM1249065 ,
GSM1249066 ,
GSM1249067 ,
GSM1249068 ,
GSM1249069 ,
GSM1249070 ,
GSM1249071 ,
GSM1249072 ,
GSM1249073 ,
GSM1249074 ,
GSM1249075 ,
GSM1249076 ,
GSM1249077 ,
GSM1249078 ,
GSM1249079 ,
GSM1249080 ,
GSM1249081 ,
GSM1249082 ,
GSM1254745 ,
GSM1254746 ,
GSM1254747 ,
GSM1254748 ,
GSM1254749 ,
GSM1254750 ,
GSM1360076 ,
GSM1360077 ,
GSM1360078 ,
GSM1360079 ,
GSM1360080 ,
GSM1360081 ,
GSM1360082 ,
GSM1360083 ,
GSM1360084 ,
GSM1385416 ,
GSM1385417 ,
GSM1579297 ,
GSM1579298 ,
GSM1579299 ,
GSM1579300 ,
GSM1860716 ,
GSM1860717 ,
GSM1860718 ,
GSM1860719 ,
GSM1860720 ,
GSM1860721 ,
GSM1860722 ,
GSM1860723 ,
GSM1860724 ,
GSM2344469 ,
GSM2344470 ,
GSM2344471 ,
GSM2344472 ,
GSM2344473 ,
GSM2344474 ,
GSM3755700 ,
GSM3755701 ,
GSM3755702 ,
GSM3755703 ,
GSM5165370 ,
GSM5165371 ,
GSM5165372 ,
GSM5165373 Series (38)
GSE20179 Transcriptional profiling of embryonic zebrafish expressing a mutant TNNT2
GSE23156 Effects of PKC412 on gene expression and link to physiological effects in zebrafish Danio rerio eleuthero-embryos
GSE23157 Effects of diazepam on gene expression and link to physiological effects in different life stages in zebrafish Danio rerio
GSE24595 Adult zebrafish: cornea vs epidermis
GSE24599 Comparison of cornea to the surface tissues, dermis and epidermis, in adult zebrafish
GSE24616 A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns
GSE24934 The knockdown of the maternal estrogen receptor-β2 mRNA (ers2a) affects embryo transcript contents and larval development in zebrafish
GSE25517 The knockdown of maternal glucocorticoid receptor mRNA alters embryo development in zebrafish
GSE28239 Identification and functional impact of genomic copy number variants in zebrafish, an important human disease model (Zebrafish Strain CNVs) (expression array)
GSE28318 Zebrafish 22 hpf embryos: WT vs. MO-grnA injected
GSE28328 Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis
GSE28351 Effects of bisphenol A on ovarian gene expression in fathead minnows and zebrafish [ZF data set]
GSE28354 Effects of bisphenol A on ovarian gene expression in fathead minnows and zebrafish
GSE31766 Defl1 knockdown gene expression in Zebrafish 12.5 hpf embryos
GSE32118 Host and pathogen interaction: time course [zebrafish]
GSE32119 Host and pathogen interaction: time course
GSE32636 Behavioural fever and its underlying molecular mechanisms
GSE33965 Danio rerio: wilde-type control vs. tbx5 morpholino
GSE34616 Transcriptome response to genistein in zebrafish embryos
GSE35737 Zebrafish ectonucleoside triphosphate/diphosphohydrolase 5 (entpd5) mutants compared to siblings at 7 dpf
GSE38441 WT vs MO-grnA injected: 16, 24, 48, 72 hpf trunk region of zebrafish embryos
GSE39169 Environmentally relevant concentrations of the flame retardant BDE-209 in sediment cause minimal effects on Zebrafish embryos.
GSE40615 Using individual coping styles to explain within-population variation in adaptive gene expression
GSE42766 Effect of 17 β-estradiol on developing zebrafish embryos
GSE47971 The functional study of zebrafish Bad gene
GSE49626 Study of the differentially-expressed genes induced by the expession of two viral glycoproteins in muscle cells of adult zebrafish
GSE51603 Innate and adaptive immunity in zebrafish: time course (zebrafish)
GSE51890 Expression profiling of control vs. ndr1 overexpression zebrafish blastulas
GSE51894 Smad2 and Eomesa
GSE56375 Wound healing process after TBI in zebrafish: time course (zebrafish)
GSE57599 The functional study of zebrafish rig1 gene in NNV infection
GSE57600 Gene expression profile in NNV infected ZF-4 cells
GSE64753 CCm2-regulated cardiac genes in zebrafish
GSE72348 Wound healing process after ventricular resection in zebrafish: time course (zebrafish)
GSE88703 Aroclor exposure zebrafish embryos
GSE88704 Chlorpyrifos exposure zebrafish embryos
GSE130889 Pro-angiogenic transcriptome of zebrafish endothelial cells
GSE168749 Transcriptional profiles of cone cells, rod cells, and pineal photoreceptor cells in zebrafish
Relations Alternative to
GPL7301
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE 1
266
170
GE_BrightCorner
GE_BrightCorner
pos
2
266
168
DarkCorner
DarkCorner
pos
3
266
166
DarkCorner
DarkCorner
pos
4
266
164
DarkCorner
DarkCorner
pos
5
266
162
DarkCorner
DarkCorner
pos
6
266
160
DarkCorner
DarkCorner
pos
7
266
158
DarkCorner
DarkCorner
pos
8
266
156
DarkCorner
DarkCorner
pos
9
266
154
DarkCorner
DarkCorner
pos
10
266
152
DarkCorner
DarkCorner
pos
11
266
150
DarkCorner
DarkCorner
pos
12
266
148
NM_001042748
A_15_P139416
FALSE
NM_001042748
NM_001042748 553083 si:ch211-258l4.7
si:ch211-258l4.7
Dr.10397
ENSDART00000104422
TC351563
ref|NM_001042748|ref|NM_001077309|ens|ENSDART00000104422|ens|ENSDART00000104423
chr22:36463703-36463644
Danio rerio si:ch211-258l4.7 (si:ch211-258l4.7), mRNA [NM_001042748]
GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process)
AAAGATACGAGCAAATGTGGAGTACATCCTTCAGTTCGGCTCTACAGACGACCCGTTTTT
13
266
146
NM_001083012
A_15_P205686
FALSE
NM_001083012
NM_001083012 100009643 zgc:158694
zgc:158694
Dr.116540
ENSDART00000075605
ref|NM_001083012|ens|ENSDART00000075605|gb|BC131880
chr4:33959883-33959942
Danio rerio zgc:158694 (zgc:158694), mRNA [NM_001083012]
GO:0004872(receptor activity)|GO:0007165(signal transduction)|GO:0016021(integral to membrane)
GGGGCTTTGATCCTGTGAAGATTCATTGATACATTTATTCAGGAGTATTTTTGTCTGTTA
14
266
144
ENSDART00000058729
A_15_P103846
FALSE
XM_001334893
BC061452 327168 jarid1b
jumonji, AT rich interactive domain 1B (Rbp2 like)
Dr.5145
ENSDART00000058729
TC309823
ens|ENSDART00000058729|gb|BC061452|ug|XM_001334893|tc|TC309823
chr11:22078547-22078606
Danio rerio jumonji, AT rich interactive domain 1B (Rbp2 like), mRNA (cDNA clone IMAGE:5603807). [BC061452]
TGTGATGTATACTGTGGCTTTCTTTAAAACAGATCTTTTCCGATGTTAATTCAACTGTGG
15
266
142
NM_001080028
A_15_P208226
FALSE
NM_001080028
NM_001080028 566499 zgc:158478
zgc:158478
Dr.101972
ref|NM_001080028|gb|BC129246
chr5:1604448-1604507
Danio rerio zgc:158478 (zgc:158478), mRNA [NM_001080028]
TGCCACACTGCTGTCAGTGCAGTTCTGCTCCACAATCAATAAAGATAAATGTTTGTATTA
16
266
140
NM_001098770
A_15_P160616
FALSE
NM_001098770
NM_001098770 100073333 zgc:162873
zgc:162873
Dr.123012
TC333165
ref|NM_001098770|gb|BC141796|tc|TC333165
chr11:33196461-33196520
Danio rerio zgc:162873 (zgc:162873), mRNA [NM_001098770]
GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process)
TTTGCACAAATGGTGGTGGCGACACTTATGCTTATGCTTCAATATCAATTTAACAAACAT
17
266
138
TC322804
A_15_P540002
FALSE
TC322804
tc|TC322804
chr18:27007243-27007302
Q566V1_BRARE (Q566V1) HLA-DPA1 protein (Fragment), partial (10%) [TC322804]
AATGTTTAAAATGGTGGTTGATCTAATCTTTGCCAGAACCTCCCTGGAGCTCAATTTATC
18
266
136
ENSDART00000061403
A_15_P201331
FALSE
XM_691721
BC090778 553307 LOC553307
hypothetical protein LOC553307
Dr.79069
ENSDART00000061403
TC330495
ens|ENSDART00000061403|ens|ENSDART00000102390|gb|BC090778|tc|TC330495
chr9:9812753-9812694
LOC553307 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5CZN6] [ENSDART00000061403]
TGGGAACTTTGGTCCTGAGAGAACACGAGATCTATCCTAATAAGAAGAAAAGGAGGAAGC
19
266
134
TC321361
A_15_P503307
FALSE
TC321361
tc|TC321361
chr23:27595032-27595091
Q90Y15_TETFL (Q90Y15) STAT4, partial (3%) [TC321361]
TGAGTTTGAGTACCATTTTACTGCCATCCTATCAAAACTAGCAGCAGAAAGTTTACCTCA
20
266
132
EH492928
A_15_P107478
FALSE
XM_699233
XM_699233 557407 LOC557407
hypothetical LOC557407
Dr.87240
TC325888
ug|EH492928|ref|XM_699233|tc|TC325888
FDR107-P00026-DEPE-F_L01 FDR107 Danio rerio cDNA clone FDR107-P00026-BR_L01 5', mRNA sequence [EH492928]
AACACACTCTGCACTGATTCGGAGGATTTAGAGAATCGAGCTAAACCAGCACAGTGACAA
45220 15910 Kbytes .Supplementary file Size Download File type/resource GPL6457_old_annotations.txt.gz
4.9 Mb
(ftp) (http) TXT
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