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Platform GPL6526 Query DataSets for GPL6526
Status Public on May 15, 2008
Title [Mouse430_2_Mm_UG] Affymetrix GeneChip Mouse Genome 430 2.0 Array [Brainarray Version 9]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol This is identical to GPL1261 but a custom cdf environment was used to extract data. The custom CDF (Mm_Unigene_9) can be found at the Web link below and also as a supplementary file at the foot of the record.
Description CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan.
After probe sequences are BLASTed against the latest UniGene Build and genome sequence, a series of filtering and grouping criteria are applied for different CDF files.
A probe must hit only one genomic location.
Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set;
Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon;
Web link
Contributor(s) Hirner S
Submission date Feb 25, 2008
Last update date Jun 21, 2012
Contact name GEO admin
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Samples (13) GSM267838, GSM267839, GSM267840, GSM267841, GSM631421, GSM631422 
Series (2)
GSE10626 MuRF1-dependent regulation of systemic carbohydrate metabolism as revealed from transgenic mouse studies
GSE25707 Synergistic activation by p38MAPK and glucocorticoid signaling mediates induction of M2-like tumor-associated macrophages expressing the novel CD20 homolog MS4A8A
Alternative to GPL1261 (Alternative CDF [official])

Data table header descriptions
UniGeneID Unigene ID
GeneName Gene Name
GeneSymbol Gene Symbol
EnsemblID Ensembl ID
EntrezID Entrez ID
SPOT_ID spot identifier

Data table
ID UniGeneID GeneName GeneSymbol ORF ORF EnsemblID EntrezID SPOT_ID
Mm.100043_at Mm.100043 glucokinase regulatory protein Gckr Gckr 231103
Mm.100065_at Mm.100065 RIKEN cDNA 1300012G16 gene 1300012G16Rik 1300012G16Rik 71772
Mm.100068_at Mm.100068 angiomotin Amot Amot 27494
Mm.100084_at Mm.436887 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 St6galnac1 St6galnac1 ENSMUSG00000000384 20445
Mm.100112_at Mm.100112 bromodomain and WD repeat domain containing 3 Brwd3 Brwd3 382236
Mm.100116_at Mm.100116 ZXD family zinc finger C Zxdc Zxdc ENSMUSG00000002930 80292
Mm.100117_at Mm.100117 RIKEN cDNA 5730406M06 gene 5730406M06Rik 5730406M06Rik ENSMUSG00000001981 66625
Mm.100125_at Mm.100125 SH3 domain binding glutamic acid-rich protein like 2 Sh3bgrl2 Sh3bgrl2 212531
Mm.100144_at Mm.100144 S100 calcium binding protein A6 (calcyclin) S100a6 S100a6 ENSMUSG00000000077 20200
Mm.100163_at Mm.100163 insulin-like 5 Insl5 Insl5 23919
Mm.100167_at Mm.100167 phosphodiesterase 8B Pde8b Pde8b ENSMUSG00000000983 218461
Mm.100168_at Mm.100168 glycine/arginine rich protein 1 Grrp1 Grrp1 ENSMUSG00000004187 72690
Mm.100172_at Mm.100172 RIKEN cDNA 8430416G17 gene 8430416G17Rik 8430416G17Rik 71469
Mm.100187_at Mm.100187 solute carrier family 26, member 4 Slc26a4 Slc26a4 23985
Mm.1001_at Mm.1001 placental protein 11 related Pp11r Pp11r ENSMUSG00000001107 19011
Mm.100253_at Mm.100253 ajuba Jub Jub 16475
Mm.10025_at Mm.10025 FK506 binding protein-like Fkbpl Fkbpl 56299
Mm.10026_at Mm.10026 cell death-inducing DFFA-like effector c Cidec Cidec 14311
Mm.100270_at Mm.100270 EF hand calcium binding domain 1 Efcab1 Efcab1 66793
Mm.100276_at Mm.100276 retinol dehydrogenase 16 Rdh16 Rdh16 19683

Total number of rows: 17931

Table truncated, full table size 1542 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL6526_mm430bmmugcdf_9.0.1.tar.gz 842.0 Kb (ftp)(http) TAR

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