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Platform GPL6526

Query DataSets for GPL6526

Status

Public on May 15, 2008

Title

[Mouse430_2_Mm_UG] Affymetrix GeneChip Mouse Genome 430 2.0 Array [Brainarray Version 9]

Technology type

in situ oligonucleotide

Distribution

custom-commercial

Organism

Manufacturer

Affymetrix

Manufacture protocol

This is identical to GPL1261 but a custom cdf environment was used to extract data. The custom CDF (Mm_Unigene_9) can be found at the Web link below and also as a supplementary file at the foot of the record.

Description

CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan.
After probe sequences are BLASTed against the latest UniGene Build and genome sequence, a series of filtering and grouping criteria are applied for different CDF files.
A probe must hit only one genomic location.
Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set;
Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon;

Web link

http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp

Contributor(s)

Submission date

Feb 25, 2008

Last update date

Jun 21, 2012

Contact name

GEO admin

E-mail(s)

geo@ncbi.nlm.nih.gov

Organization name

NCBI/NLM/NIH

Street address

9000 Rockville Pike

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Samples (13)

More...

GSM267838, GSM267839, GSM267840, GSM267841, GSM631421, GSM631422

Series (2)

GSE10626	MuRF1-dependent regulation of systemic carbohydrate metabolism as revealed from transgenic mouse studies
GSE25707	Synergistic activation by p38MAPK and glucocorticoid signaling mediates induction of M2-like tumor-associated macrophages expressing the novel CD20 homolog MS4A8A

Relations

Alternative to

GPL1261 (Alternative CDF [official])

Data table header descriptions
ID
UniGeneID	Unigene ID
GeneName	Gene Name
GeneSymbol	Gene Symbol
ORF	ORF Name
ORF	ORF Name
EnsemblID	Ensembl ID
EntrezID	Entrez ID
SPOT_ID	spot identifier

Data table
ID	UniGeneID	GeneName	GeneSymbol	ORF	ORF	EnsemblID	EntrezID	SPOT_ID
Mm.100043_at	Mm.100043	glucokinase regulatory protein	Gckr	Gckr			231103
Mm.100065_at	Mm.100065	RIKEN cDNA 1300012G16 gene	1300012G16Rik	1300012G16Rik			71772
Mm.100068_at	Mm.100068	angiomotin	Amot	Amot			27494
Mm.100084_at	Mm.436887	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	St6galnac1	St6galnac1		ENSMUSG00000000384	20445
Mm.100112_at	Mm.100112	bromodomain and WD repeat domain containing 3	Brwd3	Brwd3			382236
Mm.100116_at	Mm.100116	ZXD family zinc finger C	Zxdc	Zxdc		ENSMUSG00000002930	80292
Mm.100117_at	Mm.100117	RIKEN cDNA 5730406M06 gene	5730406M06Rik	5730406M06Rik		ENSMUSG00000001981	66625
Mm.100125_at	Mm.100125	SH3 domain binding glutamic acid-rich protein like 2	Sh3bgrl2	Sh3bgrl2			212531
Mm.100144_at	Mm.100144	S100 calcium binding protein A6 (calcyclin)	S100a6	S100a6		ENSMUSG00000000077	20200
Mm.100163_at	Mm.100163	insulin-like 5	Insl5	Insl5			23919
Mm.100167_at	Mm.100167	phosphodiesterase 8B	Pde8b	Pde8b		ENSMUSG00000000983	218461
Mm.100168_at	Mm.100168	glycine/arginine rich protein 1	Grrp1	Grrp1		ENSMUSG00000004187	72690
Mm.100172_at	Mm.100172	RIKEN cDNA 8430416G17 gene	8430416G17Rik	8430416G17Rik			71469
Mm.100187_at	Mm.100187	solute carrier family 26, member 4	Slc26a4	Slc26a4			23985
Mm.1001_at	Mm.1001	placental protein 11 related	Pp11r	Pp11r		ENSMUSG00000001107	19011
Mm.100253_at	Mm.100253	ajuba	Jub	Jub			16475
Mm.10025_at	Mm.10025	FK506 binding protein-like	Fkbpl	Fkbpl			56299
Mm.10026_at	Mm.10026	cell death-inducing DFFA-like effector c	Cidec	Cidec			14311
Mm.100270_at	Mm.100270	EF hand calcium binding domain 1	Efcab1	Efcab1			66793
Mm.100276_at	Mm.100276	retinol dehydrogenase 16	Rdh16	Rdh16			19683

Total number of rows: 17931

Table truncated, full table size 1542 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML

Supplementary file	Size	Download	File type/resource
GPL6526_mm430bmmugcdf_9.0.1.tar.gz	842.0 Kb	(ftp)(http)	TAR

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