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Platform GPL6886 Query DataSets for GPL6886
Status Public on Dec 01, 2008
Title Mouse Genome 430 2.0 Array [Mouse4302_Mm_ENSG (v11.0.1) CDF]
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol This is identical to GPL1261 but a custom cdf environment was used to extract data. We used custom chip definition files (CDF) based on Ensembl gene annotation from build 46 rather than Affymetrix annotation (Dai et al., PMID: 16284200).
Description Probes that were estimated to have a mismatch in their sequence between Mus musculus and Mus spretus were removed from the CDF environment. The details of the procedure are described in the paper. For some probesets, all probes were masked, and they are therefore not represented in the CDF file.
Submission date May 21, 2008
Last update date Mar 09, 2009
Contact name Mehmet Somel
Phone +49-(0)341-3550-530
Fax +49-(0)341-3550-555
Organization name Max Planck Institute for Evolutionary Anthropology
Department Evolutionary Genetics
Street address Deutscher Platz 6
City Leipzig
ZIP/Postal code D-04103
Country Germany
Samples (30) GSM290519, GSM290520, GSM290521, GSM290522, GSM290523, GSM290524 
Series (2)
GSE11528 Gene expression data from mouse postnatal brain development
GSE17684 Widespread over-expression of the X chromosome in sterile F1 hybrid mice
Alternative to GPL1261 (Alternative CDF [official])

Data table header descriptions
ORF Gene identifier

Data table
ID ORF Description
ENSMUSG00000000001_at ENSMUSG00000000001 Guanine nucleotide-binding protein G(k) subunit alpha (G(i) alpha-3). [Source:Uniprot/SWISSPROT;Acc:Q9DC51]
ENSMUSG00000000003_at ENSMUSG00000000003 Probasin precursor (PB). [Source:Uniprot/SWISSPROT;Acc:O08976]
ENSMUSG00000000028_at ENSMUSG00000000028 CDC45-related protein (PORC-PI-1). [Source:Uniprot/SWISSPROT;Acc:Q9Z1X9]
ENSMUSG00000000031_at ENSMUSG00000000031 M.musculus H19 mRNA (H19 protein). [Source:Uniprot/SPTREMBL;Acc:Q61639]
ENSMUSG00000000037_at ENSMUSG00000000037 sex comb on midleg-like 2 [Source:RefSeq_peptide;Acc:NP_573457]
ENSMUSG00000000049_at ENSMUSG00000000049 Beta-2-glycoprotein 1 precursor (Beta-2-glycoprotein I) (Apolipoprotein H) (Apo-H) (B2GPI) (Beta(2)GPI) (Activated protein C- binding protein) (APC inhibitor). [Source:Uniprot/SWISSPROT;Acc:Q01339]
ENSMUSG00000000056_at ENSMUSG00000000056 Nuclear prelamin A recognition factor (Iron-only hydrogenase-like protein 2) (IOP2). [Source:Uniprot/SWISSPROT;Acc:Q9CYQ7]
ENSMUSG00000000058_at ENSMUSG00000000058 Caveolin-2. [Source:Uniprot/SWISSPROT;Acc:Q9WVC3]
ENSMUSG00000000078_at ENSMUSG00000000078 Krueppel-like factor 6 (Core promoter element-binding protein). [Source:Uniprot/SWISSPROT;Acc:O08584]
ENSMUSG00000000085_at ENSMUSG00000000085 Polycomb protein SCMH1 (Sex comb on midleg homolog 1). [Source:Uniprot/SWISSPROT;Acc:Q8K214]
ENSMUSG00000000088_at ENSMUSG00000000088 Cytochrome c oxidase subunit 5A, mitochondrial precursor (Cytochrome c oxidase polypeptide Va). [Source:Uniprot/SWISSPROT;Acc:P12787]
ENSMUSG00000000093_at ENSMUSG00000000093 T-box transcription factor TBX2 (T-box protein 2). [Source:Uniprot/SWISSPROT;Acc:Q60707]
ENSMUSG00000000094_at ENSMUSG00000000094 T-box transcription factor TBX4 (T-box protein 4). [Source:Uniprot/SWISSPROT;Acc:P70325]
ENSMUSG00000000103_at ENSMUSG00000000103 Zinc finger Y-chromosomal protein 2. [Source:Uniprot/SWISSPROT;Acc:P20662]
ENSMUSG00000000120_at ENSMUSG00000000120 Tumor necrosis factor receptor superfamily member 16 precursor (Low- affinity nerve growth factor receptor) (NGF receptor) (Low affinity neurotrophin receptor p75NTR). [Source:Uniprot/SWISSPROT;Acc:Q9Z0W1]
ENSMUSG00000000125_at ENSMUSG00000000125 Proto-oncogene protein Wnt-3 precursor. [Source:Uniprot/SWISSPROT;Acc:P17553]
ENSMUSG00000000126_at ENSMUSG00000000126 Protein Wnt-9a precursor (Wnt-14). [Source:Uniprot/SWISSPROT;Acc:Q8R5M2]
ENSMUSG00000000127_at ENSMUSG00000000127 Proto-oncogene tyrosine-protein kinase FER (EC (p94-FER) (c- FER). [Source:Uniprot/SWISSPROT;Acc:P70451]
ENSMUSG00000000131_at ENSMUSG00000000131 Exportin-6 (Exp6) (Ran-binding protein 20). [Source:Uniprot/SWISSPROT;Acc:Q924Z6]
ENSMUSG00000000134_at ENSMUSG00000000134 Transcription factor E3. [Source:Uniprot/SWISSPROT;Acc:Q64092]

Total number of rows: 16317

Table truncated, full table size 2503 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL6886_Mouse4302_Mm_ENSG.cdf.gz 6.3 Mb (ftp)(http) CDF
GPL6886_Mouse4302_Mm_ENSG_desc.txt.gz 537.4 Kb (ftp)(http) TXT
GPL6886_Mouse4302_Mm_ENSG_mapping.txt.gz 2.0 Mb (ftp)(http) TXT
GPL6886_Mouse4302_Mm_ENSG_probe_tab.txt.gz 3.3 Mb (ftp)(http) TXT

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