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Platform GPL7546 Query DataSets for GPL7546
Status Public on Nov 05, 2008
Title Affymetrix GeneChip Mouse Genome 430 2.0 Array [CDF: Mm_ENTREZG_10]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol This array is identical to GPL1261 but a custom, remapped CDF environment is used to extract data. This is version 10 of the remapped CDF. The CDF for various platforms can be found at the link below.
Description CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan.
Oligonucleotide probes on GeneChips were reorganized based on the latest genome and transcriptome information. In this particular case the Entrez Gene database (build: Jun 28, 2007) was used as source.
For the CDF file based on Entrez Gene:
A probe must hit only one genomic location;
Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set;
Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon.
For detailed description please see the paper and website.
Web link
Citation(s) 16284200
Submission date Oct 31, 2008
Last update date Aug 20, 2013
Contact name Guido Hooiveld
Organization name Wageningen University
Department Div. Human Nutrition & Health
Lab Nutrition, Metabolism & Genomics Group
Street address HELIX, Stippeneng 4
City Wageningen
ZIP/Postal code NL-6708WE
Country Netherlands
Samples (295) GSM351513, GSM351514, GSM351515, GSM351516, GSM351517, GSM351518 
Series (16)
GSE13992 c-Met confers protection against chronic liver tissue damage and fibrosis progression after bile-duct-ligation in mice
GSE17576 A high fat diet causes obesity and insulin resistance in mice, but induces small changes in the muscle transcriptome
GSE18127 Hoxd genes and fiber type-specific markers specify adult mouse muscle type in a diet-independent way
Alternative to GPL1261

Data table header descriptions
SPOT_ID Control Probes

Data table
100009600_at 100009600 GLP1 GATA-like 1
100012_at 100012 OOG3 oogenesin 3
100017_at 100017 LDLRAP1 low density lipoprotein receptor adaptor protein 1
100019_at 100019 MDN1 midasin homolog (yeast)
100034251_at 100034251 OTTMUSG00000000971 predicted gene, OTTMUSG00000000971
100036521_at 100036521 LOC100036521 hypothetical gene LOC100036521
100037258_at 100037258 DNAJC3A DnaJ (Hsp40) homolog, subfamily C, member 3A
100037278_at 100037278 BCNP1 BCNP1 homolog
100038570_at 100038570 OTTMUSG00000003947 predicted gene, OTTMUSG00000003947
100038635_at 100038635 ENSMUSG00000074075 predicted gene, ENSMUSG00000074075
100038680_at 100038680 ENSMUSG00000072994 predicted gene, ENSMUSG00000072994
100038887_at 100038887 LOC100038887 hypothetical protein LOC100038887
100038959_at 100038959 LOC100038959 similar to chloride-formate exchanger
100039026_at 100039026 LOC100039026 similar to Casein kinase 2, alpha 1 polypeptide
100039027_at 100039027 LOC100039027 hypothetical protein LOC100039027
100039094_at 100039094 LOC100039094 hypothetical protein LOC100039094
100039235_at 100039235 LOC100039235 hypothetical protein LOC100039235
100039282_at 100039282 LOC100039282 hypothetical protein LOC100039282
100039284_at 100039284 LOC100039284 similar to TBP-associated factor 4
100039307_at 100039307 LOC100039307 hypothetical protein LOC100039307

Total number of rows: 16539

Table truncated, full table size 950 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7546_mm430mmentrezg_10.0.0.tar.gz 288.1 Kb (ftp)(http) TAR
GPL7546_mm430mmentrezgcdf_10.0.0.tar.gz 1.7 Mb (ftp)(http) TAR
GPL7546_mm430mmentrezgprobe_10.0.0.tar.gz 3.2 Mb (ftp)(http) TAR

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