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Status
Public on Nov 23, 2008
Title
Human Genome U133 A 2.0 Custom CDF Version 9
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Affymetrix
Manufacture protocol
http://www.affymetrix.com/products_services/arrays/specific/hgu133plus.affx#1_1
Submission date
Nov 05, 2008
Last update date
Nov 23, 2008
Contact name
Troy D Querec
Organization name
Emory University
Department
Emory Vaccine Rearch Center
Lab
Pulendran
Street address
954 Gatewood Rd
City
Atlanta
State/province
GA
ZIP/Postal code
30329
Country
USA
Samples (10)
GSM339809 , GSM339810 , GSM339811 , GSM339812 , GSM339813 , GSM339814
Series (2)
GSE13484 Profiling 11,639 genes in PBMCs from 2 donors: U133 A 2.0 Custom CDF Version 9
GSE13486 Time Course of Individuals Vaccinated with YF-17D
Relations Alternative to
GPL96 (Alternative CDF [official])
Data table header descriptions ID Custom CDF Version 9 probe set ID
Chr Chromosome number that the probe set matches to
Chr Strand Positive or Negative strand of the chromosome
Chr From Start positioin for probe set on chromosome
Chr To End position for probe set on chromosome
Probe List Probes used to assemble probe set based on 2-dimensional coordinates of Affymetrix Human Genome U133 Plus 2.0 Array
Description If known, the name of the gene associated with the probe set. Otherwise other descriptive information about the UniGene cluster associated with the probe set.
UniGene UniGene ID of the probe set from Build 199, January 16, 2007
GB_ACC GenBank locus number of probe set
ProbeHitCnt Number of Affymetrix probes used for the probe set
Length Size of nucleic acid sequence covered by the probe set
Data table ID Chr Chr Strand Chr From Chr To Probe List Description UniGene GB_ACC ProbeHitCnt Length Hs.100058_at
10
+
133856152
133869201
"(404,437)(162,313)(598,299)(222,601)(459,1)(130,311)(91,303)(619,641)(452,131)(378,281)(32,509)(542,45)(492,593)(257,309)(24,279)(328,419)(73,373)(28,109)(707,53)(374,409)(355,451)(263,57)"
Dihydropyrimidinase-like 4
Hs.100058_at
AB006713 22
2699
Hs.100072_at
1
+
226413555
226414004
"(309,141)(250,315)(61,501)(636,91)(374,535)(454,171)(294,511)(59,563)(621,203)(127,705)(566,283)"
"Gap junction protein, alpha 12, 47kDa"
Hs.100072_at
BX099423 11
745
Hs.100217_at
17
+
40679389
40680414
"(24,527)(439,661)(439,577)(228,197)(327,549)(519,639)(493,259)(634,257)(658,407)"
Formin-like 1
Hs.100217_at
BE348640 9
542
Hs.100261_at
10
+
60260636
60260993
"(356,17)(430,467)(371,453)(280,663)(78,387)(9,641)(106,81)(540,127)(391,239)(652,643)"
"CDNA FLJ26539 fis, clone KDN09310"
Hs.100261_at
AK130049 10
2232
Hs.100299_at
17
+
30352412
30355849
"(526,33)(357,153)(505,627)(353,311)(262,527)(237,63)(46,49)(404,97)(265,551)(487,231)(92,685)(367,93)(697,203)(487,635)(624,507)(545,425)(597,123)(39,653)(342,3)(169,81)(628,633)"
"Ligase III, DNA, ATP-dependent"
Hs.100299_at
X84740 21
3422
Hs.100322_at
1
+
8928509
8957664
"(538,341)(381,605)(663,29)(96,659)(682,199)(327,407)(384,413)(564,271)(62,343)"
Carbonic anhydrase VI
Hs.100322_at
M57892 9
1316
Hs.1004_at
3
+
9764121
9764533
"(231,233)(1,607)(45,551)(56,123)(592,359)(201,227)(487,615)(54,507)"
"Bromodomain and PHD finger containing, 1"
Hs.1004_at
AI982517 8
441
Hs.100426_at
11
-
65862805
65861586
"(199,203)(378,201)(201,81)(576,107)(175,311)(490,179)(239,223)(358,313)(556,373)(26,175)"
Breast cancer metastasis suppressor 1
Hs.100426_at
CA944756 10
665
Hs.100431_at
4
+
78751413
78751933
"(18,521)(301,367)(427,539)(372,29)(543,29)(474,159)(631,419)(452,571)(235,677)(408,585)(376,499)"
Chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant)
Hs.100431_at
CA418514 11
701
Hs.10082_at
19
-
48962984
48962525
"(258,83)(199,519)(359,39)(654,97)(416,21)(480,663)(647,527)(709,695)(237,437)(440,409)(455,451)"
"Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4"
Hs.10082_at
CA432594 11
653
Hs.100874_at
1
-
46915869
46915157
"(348,313)(490,233)(15,463)(343,181)(344,153)(581,275)(367,665)(693,61)(562,67)(243,157)(255,229)(709,459)(114,301)(121,87)"
ATP synthase mitochondrial F1 complex assembly factor 1
Hs.100874_at
AK001487 14
2856
Hs.100878_at
3
-
132217712
132215411
"(606,39)(260,381)(672,81)(606,231)(698,389)(21,641)(231,355)(131,105)(464,1)(502,319)(246,291)"
Asteroid homolog 1 (Drosophila)
Hs.100878_at
DB513272 11
693
Hs.100890_at
2
-
154042591
154042147
"(496,419)(436,85)(236,219)(189,443)(405,267)(332,499)(409,661)(76,461)(14,659)(568,119)(600,609)"
"Reprimo, TP53 dependent G2 arrest mediator candidate"
Hs.100890_at
BE467507 11
555
Hs.100914_at
18
+
13106377
13114935
"(18,189)(49,595)(180,31)(324,403)(707,185)(156,437)(470,353)(228,401)(600,213)(368,447)"
Centrosomal protein 192kDa
Hs.100914_at
BQ428227 10
664
Hs.100915_at
11
-
45896039
45887812
"(202,547)(480,247)(318,273)(683,71)(9,533)(628,75)(143,487)(299,327)(165,397)(520,329)(391,297)(185,633)(184,633)(579,137)(43,629)(309,235)(523,471)(703,313)(355,689)(39,61)(574,325)(386,605)(326,1)(480,153)(570,637)(153,89)(447,663)(466,607)(696,121)(444,701)(294,663)(467,473)(445,585)(130,567)(614,167)(550,255)"
Peroxisomal biogenesis factor 16
Hs.100915_at
NM_057174 28
1726
Hs.100921_at
6
+
28308711
28309010
"(551,191)(286,145)(337,81)(84,641)(516,87)(380,351)(50,583)(609,581)(1,603)(300,431)(397,695)"
Zinc finger protein 193
Hs.100921_at
BE047603 11
448
Hs.10094_at
16
-
66541868
66535731
"(392,303)(276,45)(200,93)(706,5)(545,39)(575,277)(578,295)(646,403)(440,241)(674,325)(144,537)(516,563)(213,503)(518,77)(635,35)(702,429)(206,575)(642,207)(284,703)(387,43)(244,275)(118,553)(220,25)(353,465)(331,215)(501,39)(74,647)(334,277)(487,435)"
"Solute carrier family 12 (potassium/chloride transporters), member 4"
Hs.10094_at
AF054506 29
3768
Hs.10095_at
19
-
6167471
6161392
"(689,191)(228,247)(300,207)(246,187)(709,305)(651,309)(583,339)(175,263)(502,181)"
"Myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1"
Hs.10095_at
CN294828 9
604
Hs.10101_at
1
-
20699068
20698569
"(88,151)(85,359)(127,155)(502,383)(60,79)(395,235)(469,203)(251,301)(319,697)(415,615)(396,47)"
Chromosome 1 open reading frame 166
Hs.10101_at
BP420719 11
563
Hs.101014_at
11
+
95163290
95205412
"(531,57)(588,331)(248,425)(655,233)(201,395)(567,123)(476,379)(441,171)(702,687)(285,365)(131,125)(120,67)(81,495)(80,495)(147,423)(100,415)(99,415)(439,253)(438,253)(499,327)(298,477)(659,197)(247,647)(248,647)(239,417)(238,417)(69,571)(176,453)(118,539)(264,461)(361,115)(469,319)(233,553)(401,575)(355,143)(532,563)(338,323)(551,421)(389,425)(166,25)(31,343)(450,421)(461,101)(76,661)(252,61)(55,563)(384,475)(538,705)(158,697)(295,35)(295,131)(146,163)"
Centrosomal protein 57kDa
Hs.101014_at
D42054 52
2913
11639 2675 Kbytes .Supplementary data files not provided
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