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Status
Public on Nov 23, 2008
Title
Human Genome U133 Plus 2.0 Custom CDF Version 9
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Affymetrix
Manufacture protocol
http://www.affymetrix.com/products_services/arrays/specific/hgu133plus.affx#1_1
Submission date
Nov 05, 2008
Last update date
Nov 23, 2008
Contact name
Troy D Querec
Organization name
Emory University
Department
Emory Vaccine Rearch Center
Lab
Pulendran
Street address
954 Gatewood Rd
City
Atlanta
State/province
GA
ZIP/Postal code
30329
Country
USA
Samples (87)
GSM339820 , GSM339821 , GSM339822 , GSM339823 , GSM339824 , GSM339825
GSM339826 ,
GSM339827 ,
GSM339828 ,
GSM339829 ,
GSM339830 ,
GSM339831 ,
GSM339832 ,
GSM339833 ,
GSM339834 ,
GSM339835 ,
GSM339836 ,
GSM339837 ,
GSM339838 ,
GSM339839 ,
GSM339840 ,
GSM339841 ,
GSM339842 ,
GSM339843 ,
GSM339844 ,
GSM339845 ,
GSM339846 ,
GSM339847 ,
GSM339848 ,
GSM339849 ,
GSM339850 ,
GSM339851 ,
GSM339852 ,
GSM339853 ,
GSM339854 ,
GSM339855 ,
GSM339856 ,
GSM339857 ,
GSM339858 ,
GSM339859 ,
GSM339860 ,
GSM339861 ,
GSM339862 ,
GSM339863 ,
GSM339864 ,
GSM339865 ,
GSM339866 ,
GSM339867 ,
GSM339868 ,
GSM339869 ,
GSM339870 ,
GSM339871 ,
GSM339872 ,
GSM339873 ,
GSM339874 ,
GSM339875 ,
GSM339876 ,
GSM339877 ,
GSM339878 ,
GSM339879 ,
GSM339880 ,
GSM339881 ,
GSM339882 ,
GSM339883 ,
GSM339884 ,
GSM339885 ,
GSM339886 ,
GSM339887 ,
GSM339888 ,
GSM339889 ,
GSM339890 ,
GSM339891 ,
GSM339892 ,
GSM339893 ,
GSM339894 ,
GSM339895 ,
GSM339896 ,
GSM339897 ,
GSM339898 ,
GSM339899 ,
GSM339900 ,
GSM339901 ,
GSM339902 ,
GSM339903 ,
GSM339904 ,
GSM339905 ,
GSM339906 Series (2)
GSE13485 Profiling 20,077 genes in 25 vaccine recipients: U133 Plus 2.0, Custom CDF Version 9
GSE13486 Time Course of Individuals Vaccinated with YF-17D
Relations Alternative to
GPL570 (Alternative CDF [official])
Data table header descriptions ID Custom CDF Version 9 probe set ID
Chr Chromosome number that the probe set matches to
Chr Strand Positive or Negative strand of the chromosome
Chr From Start positioin for probe set on chromosome
Chr To End position for probe set on chromosome
Probe List Probes used to assemble probe set based on 2-dimensional coordinates of Affymetrix Human Genome U133 Plus 2.0 Array
Description If known, the name of the gene associated with the probe set. Otherwise other descriptive information about the UniGene cluster associated with the probe set.
UniGene UniGene ID of the probe set from Build 199, January 16, 2007
GB_ACC GenBank locus number of probe set
ProbeHitCnt Number of Affymetrix probes used for the probe set
Length Size of nucleic acid sequence covered by the probe set
Data table ID Chr Chr Strand Chr From Chr To Probe List Description UniGene GB_ACC ProbeHitCnt Length Hs.100043_at
19
+
17915155
17915759
"(283,321)(382,45)(69,439)(5,593)(147,325)(315,485)(8,1033)(860,485)(994,295)(790,323)(323,485)"
Coiled-coil domain containing 124
Hs.100043
CB160470 11
569
Hs.100057_at
20
+
2045851
2077140
"(1116,663)(393,215)(208,709)(227,409)(526,825)(1096,547)(670,145)(278,257)(34,583)(938,787)(631,777)(403,937)(749,611)"
Serine/threonine kinase 35
Hs.100057
NM_080836 13
6033
Hs.100058_at
10
+
133856152
133869201
"(1097,699)(930,505)(328,973)(449,485)(320,105)(622,497)(72,491)(800,1037)(953,231)(446,491)(901,823)(54,79)(532,961)(343,501)(748,457)(1135,675)(832,601)(267,187)(75,101)(355,661)(612,731)(253,99)"
Dihydropyrimidinase-like 4
Hs.100058
AB006713 22
2699
Hs.100072_at
1
+
226413555
226414004
"(757,247)(871,517)(1136,811)(1070,157)(576,869)(475,301)(22,829)(435,911)(188,359)(672,1153)(981,465)"
"Gap junction protein, alpha 12, 47kDa"
Hs.100072
BX099423 11
745
Hs.100217_at
17
+
40667267
40680414
"(1119,217)(343,299)(888,631)(635,853)(132,1079)(541,937)(21,339)(966,889)(402,1031)(110,431)(372,431)(1047,645)"
Formin-like 1
Hs.100217
AF432213 12
3435
Hs.100261_at
10
+
60260636
60260993
"(862,29)(216,759)(1073,733)(326,1079)(32,623)(464,1035)(734,141)(840,583)(252,407)(626,1043)"
"CDNA FLJ26539 fis, clone KDN09310"
Hs.100261
AK130049 10
2232
Hs.100299_at
17
+
30340793
30355849
"(852,655)(261,897)(1157,985)(1138,475)(824,941)(174,483)(1060,511)(739,733)(831,727)(117,289)(615,83)(468,279)(1126,1013)(862,501)(676,855)(1127,109)(1114,105)(377,169)(1003,891)(405,393)(1132,1125)(672,161)(760,315)(566,1025)(389,823)(487,687)(116,215)(420,1057)(95,3)(352,141)(564,1023)"
"Ligase III, DNA, ATP-dependent"
Hs.100299
X84740 21
3422
Hs.100322_at
1
+
8928509
8957664
"(77,553)(56,705)(14,525)(356,1117)(859,109)(1126,1111)(552,645)(563,365)(183,881)(259,475)(1105,129)(446,689)(1158,979)(875,49)(456,1061)(938,343)(51,655)(913,663)(77,449)(426,549)"
Carbonic anhydrase VI
Hs.100322
BC034350 11
1206
Hs.1004_at
3
+
9764121
9764533
"(419,397)(975,983)(334,893)(208,213)(787,601)(632,387)(122,1011)(247,823)"
"Bromodomain and PHD finger containing, 1"
Hs.1004
AI982517 8
441
Hs.10041_at
16
-
4179768
4179466
"(1037,777)(786,885)(321,663)(339,23)(1124,813)(1037,479)(1146,333)(995,171)(80,133)(1043,1035)(236,691)"
Sarcalumenin
Hs.10041
F20632 11
421
Hs.100426_at
11
-
65862805
65861586
"(186,351)(659,347)(694,141)(680,189)(1107,499)(964,313)(969,379)(660,505)(41,603)(532,305)"
Breast cancer metastasis suppressor 1
Hs.100426
CA944756 10
665
Hs.100431_at
4
+
78751413
78751933
"(195,847)(602,591)(551,875)(516,51)(1011,49)(112,285)(149,677)(1073,925)(988,1101)(208,949)(350,813)"
Chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant)
Hs.100431
CA418514 11
701
Hs.10056_at
11
-
124013770
124010903
"(205,487)(1035,577)(695,393)(890,347)(717,407)(489,1157)(1127,355)(191,387)(781,913)(498,1135)(1132,603)(1105,1135)(464,149)(254,821)(119,847)(955,81)(1034,181)(685,111)(970,13)(116,941)(415,1067)"
Sialic acid acetylesterase
Hs.10056
AL137496 21
2739
Hs.100686_at
7
-
16879962
16865555
"(861,643)(554,271)(901,881)(109,695)(557,583)(809,553)(823,479)(192,215)(618,835)(986,473)"
Breast cancer membrane protein 11
Hs.100686
BM750389 10
537
Hs.100743_at
2
-
158905362
158736724
"(646,275)(756,121)(766,533)(309,1123)(789,583)(289,897)(1,433)(364,593)(795,53)(781,165)(169,1071)(588,115)(630,961)(598,245)(500,121)(25,687)(523,1071)(865,267)(777,629)(996,571)(498,185)"
Hypothetical protein BC015395
Hs.100743
BC107597 19
2041
Hs.10082_at
19
-
48962984
48962525
"(5,145)(394,845)(186,87)(141,171)(495,37)(461,1079)(499,889)(225,1137)(419,709)(184,661)(591,729)"
"Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4"
Hs.10082
CA432594 11
653
Hs.100866_at
5
-
126406538
126406211
"(141,611)(706,783)(650,767)(990,353)(459,47)(442,87)(791,759)(378,1153)(1150,1031)(902,1137)(991,1107)"
Transcribed locus
Hs.100866
AI627420 11
453
Hs.100874_at
1
-
46921615
46871064
"(1066,1101)(803,123)(521,153)(503,505)(805,397)(503,747)(163,321)(510,269)(745,449)(1153,1087)(105,111)(310,135)(21,277)(774,389)(405,747)(1001,487)(983,151)(972,109)(415,193)(195,1023)(208,425)(1050,109)(271,583)(409,561)(119,1009)(561,669)(569,63)(386,367)(573,1085)(750,939)(273,1077)"
ATP synthase mitochondrial F1 complex assembly factor 1
Hs.100874
AK001487 17
2856
Hs.100878_at
3
-
132217712
132215411
"(96,69)(369,615)(1024,163)(1148,393)(633,631)(748,1031)(1029,573)(193,181)(41,23)(534,513)(1096,471)"
Asteroid homolog 1 (Drosophila)
Hs.100878
DB513272 11
693
Hs.100890_at
2
-
154042591
154042147
"(493,677)(883,147)(767,375)(310,717)(307,441)(44,811)(650,1071)(508,721)(1047,1065)(54,209)(771,985)"
"Reprimo, TP53 dependent G2 arrest mediator candidate"
Hs.100890
BE467507 11
555
20077 1994 Kbytes .Supplementary data files not provided
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