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Platform GPL7695 Query DataSets for GPL7695
Status Public on Nov 24, 2008
Title NimbleGen Homo sapiens HG17 promoter 2 of 2
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site
 
Description Build: HG17, NCBI 35
 
Submission date Nov 24, 2008
Last update date Nov 24, 2008
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (2) GSM344954, GSM457813
Series (2)
GSE13315 Identifying Sites Bound by Epstein Barr Nuclear Antigen 1 (EBNA1) in the Human Genome
GSE18337 Chip-chip from HCT116 cells with YBX1

Data table header descriptions
ID PROBE_ID = The NimbleGen probe identifier.
CHROMOSOME The chromosome or parent sequence that the probe is located on.
RANGE_GB RefSeq assembly accession
SPOT_ID
RANGE_START Start position of the PROBE SEQUENCE in the sequence/region of interest, starting from the left/5' end (Build: HG17, NCBI 35).
LENGTH Length of the probe in base pairs.
SEQUENCE Probe sequence

Data table
ID CHROMOSOME RANGE_GB SPOT_ID RANGE_START LENGTH SEQUENCE
CHR200P051577970 chr2 NC_000002.9 51577970 57 ACTGAATTGTCAAAAAAACTGCTTCTTTAAACAGGTCATGCCAGCCAATCCAACAGG
CHR200P051578200 chr2 NC_000002.9 51578200 65 TATTTATTGAGAGACCTCTGTCCTTTGAAAAGAAATGCAAGAATGCTATCAGACTGATGATCAGG
CHR200P051578449 chr2 NC_000002.9 51578449 58 GACCTTTGTCCCTTGAAAAACAGCAATTTGTGAAGACTCAGATGGCAAAAATGCAAAC
CHR200P051578625 chr2 NC_000002.9 51578625 66 ATGATGCTGGCTCAGAAAATACTAAGAAAGGATACATTCTGGATGTCAACTCAACCATCATATTGA
CHR200P051578819 chr2 NC_000002.9 51578819 60 AGCCACTAGAGGAGTATTCTATATAAATATGGGTCAGAACTAATGGTCTACTCTACATGC
CHR200P051579724 chr2 NC_000002.9 51579724 50 CTATACACACGTGGCAAGGGTGGAGGAAGAAATTAGAAGGGATGCAATAA
CHR200P051579836 chr2 NC_000002.9 51579836 59 TCAAATGGAATACCAGGACAGAAAGTGACTTCTAGGACTGTTCAAGTTTGTGTGTTCAA
CHR200P051579969 chr2 NC_000002.9 51579969 61 TGTGTATTCTTGTTTGAAACCAATGAGGATGAATATGACAGTAAGGGAGAAGTATCCCACA
CHR200P051581883 chr2 NC_000002.9 51581883 61 ATGCTAAGTCTCAGGCTATAATGTTTCTAAATAAATACCAATTCAGTTCAGCTGTGGGCAG
CHR200P051581993 chr2 NC_000002.9 51581993 46 ACCAGCTGATTCCCTCCACATTGCATTCCAACAAACACAGGTTTGA
CHR200P051582159 chr2 NC_000002.9 51582159 63 TAGATATTTGCAAGCCAAGATCACAGGGAGGGTAATCTAATCATGTATTTAAAGTTGCTGCTG
CHR200P051582292 chr2 NC_000002.9 51582292 60 GCACTGTTTTGCCCTTAGTATTTCATTGCCATTTAGTTAGGATACAGTAGATACAGACCA
CHR200P051582780 chr2 NC_000002.9 51582780 58 GCGCAGGAGTTTTCAAGGCTGTTAAATAAGCTGCTCACTTGAAGTATTAAAGTCCAAA
CHR200P051582928 chr2 NC_000002.9 51582928 58 TTTATTAGCTTAATTTCTGCTGGTGCAACCATTGTATGCGTAACAGGGGTACTTGAAG
CHR200P051583777 chr2 NC_000002.9 51583777 53 TTTAACCAAACTTGGTCTCTAGTAAAGCCTCCATGGTGCCAAGATCTTGTTGT
CHR200P051583887 chr2 NC_000002.9 51583887 50 ACTGAGACCAGTTTTGGGATGTCAGGAGAAAGATTTCTTTCCTATCCCTG
CHR200P051584014 chr2 NC_000002.9 51584014 63 TGATGGTGAATTTAGGTTCATTTCTCCTGTTATGTGGATACAACCAAAGGTCTGCATCATGTA
CHR200P051591731 chr2 NC_000002.9 51591731 58 TCAACTCTAAGTCAAAAGAACAGTGGTAGAGCAGACAGAGTTAAGAAACTTCCAACAG
CHR200P051592128 chr2 NC_000002.9 51592128 54 CCAAATGAGGGAGGGTAAGATATTTTGGACCCATATTTTGAGTCCTACCAACTA
CHR200P051592238 chr2 NC_000002.9 51592238 50 ATGTAGTCCTCTAAAAAACCCCTGAGGTGGTTCTGATACTTGCCTATTGC

Total number of rows: 367410

Table truncated, full table size 33159 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7695_2005-03-10_HG17_promoter2.ndf.gz 18.1 Mb (ftp)(http) NDF
GPL7695_2005-03-10_HG17_promoter2.pos.gz 3.0 Mb (ftp)(http) POS

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