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Platform GPL7727 Query DataSets for GPL7727
Status Public on Dec 02, 2008
Title Agilent-015061 C. elegans Oligo Microarray 4x44K G2519F (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Caenorhabditis elegans
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G2519F
 
Description
This microarray provides genome-wide coverage of C. elegans with over 21,000 predicted genes from WormBase, a public C. elegans genome database.

Arrays of this design have barcodes that begin with 16015061 or 2515061.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL8209
 
Submission date Dec 02, 2008
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (301) GSM360120, GSM360121, GSM360122, GSM360123, GSM360124, GSM360125 
Series (11)
GSE14475 Gene expression profiling of C. elegans under various thermal conditions
GSE23446 Reproductive aging: sma-2;fem-1 day 8 oocyte vs fem-1 day 8 oocyte
GSE23447 Reproductive aging: fem-1 day 3 oocyte vs fem-1 day 8 oocyte
Relations
Alternative to GPL8209

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
ORF ORF Name
SPOT Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE
SPOT_ID

Data table
ID COL ROW ORF SPOT CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE SPOT_ID
1 266 170 GE_BrightCorner pos CONTROL
2 266 168 DarkCorner pos CONTROL
3 266 166 DarkCorner pos CONTROL
4 266 164 DarkCorner pos CONTROL
5 266 162 DarkCorner pos CONTROL
6 266 160 DarkCorner pos CONTROL
7 266 158 DarkCorner pos CONTROL
8 266 156 DarkCorner pos CONTROL
9 266 154 DarkCorner pos CONTROL
10 266 152 DarkCorner pos CONTROL
11 266 150 DarkCorner pos CONTROL
12 266 148 Y37E11AM.1 A_12_P108045 FALSE wb|Y37E11AM.1 chrIV:3735343-3735402 AATCGTACTATGAAAAGCTTCTGAAACGGCAGAAAGCAAAGGAAGATGACGAGAAGACGG
13 266 146 C01F1.4 A_12_P108879 FALSE wb|C01F1.4 chrII:4279055-4279114 AAGTGAGCTTGAGCCACTGAAAACGAGATGCTCACAACCAAATGCACATTCTGTGATGCT
14 266 144 R90.3 A_12_P115540 FALSE wb|R90.3 chrV:12906994-12906935 Transthyretin-like family [R90.3] TCACTTCCGGTAGTCAACCATCACGAACTTTTGACATTGGCACATTGAACTTGGCCAACA
15 266 142 T27B7.2 A_12_P101622 FALSE wb|T27B7.2 chrV:2288254-2288195 zinc finger protein [T27B7.2] GAAACACGACCGCACCGGGAGTTGGGAAAAGTTTTCAACGTTTTGAAGACGGAATTTTCA
16 266 140 B0024.3 A_12_P105685 FALSE wb|B0024.3 chrV:10291666-10291725 TGCGGCAATTCAAGAACAACTAGAACACGAACAGAAACGGATATTCCAATGATAAAAGTA
17 266 138 Y53H1B.2 A_12_P117297 FALSE wb|Y53H1B.2 chrI:11300819-11300760 CCAATGCCAGATCTTACCGAGGTTCAGATTCAGGGAGAGGAGACTGATGTTTAACCTTTT
18 266 136 T14B4.8 A_12_P104093 FALSE wb|T14B4.8 chrII:6720427-6720368 TTGTACATTAAGCAGAGCTGTTGTCACTCGAACATCTCCATCTTGTTTTCCTTTCTTTCG
19 266 134 F57C9.4a A_12_P120371 FALSE wb|F57C9.4a chrI:4833643-4833749 TTCAATCTCCGTGCATCTAAAGTACATTACGAAGACTATAGCCCTGGTGATGCATCTACA
20 266 132 Y20C6A.2 A_12_P117675 FALSE wb|Y20C6A.2 chrV:17383606-17383665 AGGAGGACGGTATATTCAAAGCAAAGATGGAATTACTGCCGTTGTCGGGTTTCGATTTCT

Total number of rows: 45220

Table truncated, full table size 6602 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7727_old_annotations.txt.gz 2.3 Mb (ftp)(http) TXT

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