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Platform GPL80 Query DataSets for GPL80
Status Public on Mar 11, 2002
Title [Hu6800] Affymetrix Human Full Length HuGeneFL Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www.ncbi.nlm.nih.gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html

Has 7129 entries and was indexed 29-Jan-2002.
Probes represent approximately 5,000 full-length human sequences.

Keywords = high density oligonucleotide array
July 08, 2016: annotation table updated with netaffx build 35
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=hugenefl
http://www.affymetrix.com/analysis/index.affx
Submission date Feb 19, 2002
Last update date Jul 08, 2016
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (1490) GSM575, GSM576, GSM577, GSM578, GSM579, GSM2289 
Series (57)
GSE64 Insulin sensitive muscle sample pool 1
GSE65 Insulin sensitive muscle sample pool 2
GSE66 Insulin sensitive muscle sample pool 3

Data table header descriptions
ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
SPOT_ID identifies controls
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description GenBank description associated with the representative public identifier. Blank for some probe sets.
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID GB_ACC SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
A28102_at A28102 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank A28102, class A, 20 probes, 16 in A28102cds 986-1442: 4 in reverseSequence, 1546-1582, Human GABAa receptor alpha-3 subunit. A28102 gamma-aminobutyric acid (GABA) A receptor, alpha 3 GABRA3 2556 NM_000808 /// XM_005274659 /// XM_006724811 0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0034220 // ion transmembrane transport // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 1902476 // chloride transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0008503 // benzodiazepine receptor activity // traceable author statement
AB000114_at AB000114 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000114, class A, 20 probes, 20 in AB000114 1818-2208, Human mRNA for osteomodulin, complete cds AB000114 osteomodulin OMD 4958 NM_005014 0005975 // carbohydrate metabolic process // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0018146 // keratan sulfate biosynthetic process // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0042340 // keratan sulfate catabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005796 // Golgi lumen // traceable author statement /// 0043202 // lysosomal lumen // traceable author statement 0005515 // protein binding // inferred from electronic annotation
AB000115_at AB000115 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000115, class A, 20 probes, 20 in AB000115 1469-1973, Human mRNA, complete cds AB000115 interferon-induced protein 44-like IFI44L 10964 NM_006820 /// XM_005270391 /// XM_005270392 /// XM_005270393 /// XM_006710303 /// XM_006710304 0006955 // immune response // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation
AB000220_at AB000220 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000220, class A, 20 probes, 20 in AB000220 4588-5134, Human mRNA for semaphorin E, complete cds AB000220 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C SEMA3C 10512 NM_006379 /// XM_005250113 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0003215 // cardiac right ventricle morphogenesis // inferred from electronic annotation /// 0003350 // pulmonary myocardium development // inferred from electronic annotation /// 0006955 // immune response // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0021915 // neural tube development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042493 // response to drug // traceable author statement /// 0060174 // limb bud formation // inferred from electronic annotation /// 0060666 // dichotomous subdivision of terminal units involved in salivary gland branching // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0030215 // semaphorin receptor binding // inferred from electronic annotation
AB000381_s_at AB000381 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000381, class A, 20 probes, 19 in AB000381exon#2-4 45-395: 1 not in GB record, Human DNA for GPI-anchored molecule-like protein, complete cds AB000381 glycosylphosphatidylinositol anchored molecule like GML 2765 NM_002066 0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // traceable author statement /// 0031225 // anchored component of membrane // inferred from electronic annotation
AB000409_at AB000409 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000409, class A, 20 probes, 20 in AB000409 2046-2538, Human mRNA for MNK1, complete cds AB000409 MAP kinase interacting serine/threonine kinase 1 MKNK1 8569 NM_001135553 /// NM_003684 /// NM_198973 /// NR_024174 /// NR_024175 /// NR_024176 /// XM_006710999 /// XM_006711000 /// XM_006711001 /// XM_006711002 /// XM_006711003 /// XM_006711004 /// XM_006711005 /// XM_006711006 /// XM_006711007 /// XM_006711008 /// XM_006711009 /// XM_006711010 /// XM_006711011 /// XM_006711012 /// XM_006711013 /// XM_006711014 /// XM_006711015 /// XR_426637 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0009651 // response to salt stress // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation
AB000410_s_at AB000410 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000410, class A, 20 probes, 20 in AB000410mRNA 947-1442, Human hOGG1 mRNA, complete cds AB000410 8-oxoguanine DNA glycosylase OGG1 4968 NM_002542 /// NM_016819 /// NM_016820 /// NM_016821 /// NM_016826 /// NM_016827 /// NM_016828 /// NM_016829 /// XM_005265185 0000737 // DNA catabolic process, endonucleolytic // inferred from electronic annotation /// 0000737 // DNA catabolic process, endonucleolytic // traceable author statement /// 0002526 // acute inflammatory response // inferred from electronic annotation /// 0006281 // DNA repair // traceable author statement /// 0006284 // base-excision repair // traceable author statement /// 0006285 // base-excision repair, AP site formation // traceable author statement /// 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // traceable author statement /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009314 // response to radiation // inferred from direct assay /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from direct assay /// 0033158 // regulation of protein import into nucleus, translocation // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0043393 // regulation of protein binding // inferred from direct assay /// 0045007 // depurination // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0046827 // positive regulation of protein export from nucleus // inferred from electronic annotation /// 0051147 // regulation of muscle cell differentiation // inferred from direct assay /// 0051149 // positive regulation of muscle cell differentiation // inferred from mutant phenotype /// 0051593 // response to folic acid // inferred from electronic annotation /// 0051835 // positive regulation of synapse structural plasticity // inferred from mutant phenotype /// 0060999 // positive regulation of dendritic spine development // inferred from mutant phenotype /// 0071276 // cellular response to cadmium ion // inferred from electronic annotation /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from direct assay /// 0090305 // nucleic acid phosphodiester bond hydrolysis // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from electronic annotation /// 0004519 // endonuclease activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008534 // oxidized purine nucleobase lesion DNA N-glycosylase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0019104 // DNA N-glycosylase activity // inferred from electronic annotation /// 0034039 // 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity // inferred from electronic annotation
AB000449_at AB000449 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000449, class A, 20 probes, 20 in AB000449 1091-1607, Human mRNA for VRK1, complete cds AB000449 vaccinia related kinase 1 VRK1 7443 NM_003384 /// XM_005268041 /// XM_006720247 0000278 // mitotic cell cycle // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0007084 // mitotic nuclear envelope reassembly // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0043987 // histone H3-S10 phosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0072355 // histone H3-T3 phosphorylation // inferred from direct assay /// 0090166 // Golgi disassembly // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005795 // Golgi stack // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0031493 // nucleosomal histone binding // inferred from physical interaction /// 0035175 // histone kinase activity (H3-S10 specific) // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0072354 // histone kinase activity (H3-T3 specific) // inferred from direct assay
AB000450_at AB000450 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000450, class A, 20 probes, 20 in AB000450 1298-1730, Human mRNA for VRK2, complete cds AB000450 vaccinia related kinase 2 VRK2 7444 NM_001130480 /// NM_001130481 /// NM_001130482 /// NM_001130483 /// NM_001288836 /// NM_001288837 /// NM_001288838 /// NM_001288839 /// NM_006296 /// XM_005264540 /// XM_005264541 /// XM_006712090 /// XM_006712091 /// XM_006712092 /// XM_006712093 0006468 // protein phosphorylation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // inferred from mutant phenotype /// 0043408 // regulation of MAPK cascade // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 2000659 // regulation of interleukin-1-mediated signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation
AB000460_at AB000460 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000460, class A, 20 probes, 20 in AB000460 4262-4724, Human mRNA, clone RES4-22B, complete cds AB000460 family with sequence similarity 193, member A FAM193A 8603 NM_001256666 /// NM_001256667 /// NM_001256668 /// NM_003704 /// NR_046335 /// NR_046336 /// XM_006713930 /// XM_006713931 /// XM_006713932 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay
AB000462_at AB000462 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000462, class A, 20 probes, 20 in AB000462 6801-7227, Human mRNA for SH3 binding protein, clone RES4-23A, complete cds AB000462 SH3-domain binding protein 2 SH3BP2 6452 NM_001122681 /// NM_001145855 /// NM_001145856 /// NM_003023 /// XM_005247997 /// XM_005247998 /// XM_005247999 /// XM_005248000 /// XM_006713911 /// XM_006713912 /// XM_006713913 0007165 // signal transduction // traceable author statement /// 0009967 // positive regulation of signal transduction // traceable author statement 0005070 // SH3/SH2 adaptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation
AB000464_at AB000464 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000464, class A, 20 probes, 20 in AB000464 3281-3743, Human mRNA, clone RES4-24A, exon 1, 2, 3, 4 AB000464 NOP14 antisense RNA 1 NOP14-AS1 317648 NR_015453
AB000466_at AB000466 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000466, class A, 20 probes, 20 in AB000466 2465-2963, Human mRNA, clone RES4-24C, exon 1, 2, 3 AB000466 NOP14 antisense RNA 1 NOP14-AS1 317648 NR_015453
AB000467_at AB000467 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000467, class A, 20 probes, 20 in AB000467 1590-2118, Human mRNA, clone RES4-25, partial cds AB000467 NOP14 nucleolar protein NOP14 8602 NM_001291978 /// NM_001291979 /// NM_003703 /// XM_006713929 /// XR_241655 0000447 // endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from sequence or structural similarity /// 0000462 // maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from sequence or structural similarity /// 0000472 // endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from sequence or structural similarity /// 0000480 // endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from sequence or structural similarity /// 0006364 // rRNA processing // inferred from sequence or structural similarity /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042274 // ribosomal small subunit biogenesis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0030686 // 90S preribosome // inferred from sequence or structural similarity /// 0030692 // Noc4p-Nop14p complex // inferred from sequence or structural similarity /// 0032040 // small-subunit processome // inferred from sequence or structural similarity 0019899 // enzyme binding // inferred from physical interaction /// 0030515 // snoRNA binding // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay
AB000468_at AB000468 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000468, class A, 20 probes, 20 in AB000468 2302-2860, Human mRNA for zinc finger protein, clone RES4-26, complete cds AB000468 ring finger protein 4 RNF4 6047 NM_001185009 /// NM_001185010 /// NM_002938 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046685 // response to arsenic-containing substance // inferred from direct assay /// 0051865 // protein autoubiquitination // inferred from sequence or structural similarity /// 0070534 // protein K63-linked ubiquitination // inferred from sequence or structural similarity /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity /// 0085020 // protein K6-linked ubiquitination // inferred from sequence or structural similarity /// 0090169 // regulation of spindle assembly // inferred from mutant phenotype /// 0090234 // regulation of kinetochore assembly // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016605 // PML body // inferred from direct assay 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0004842 // ubiquitin-protein transferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030331 // estrogen receptor binding // inferred from electronic annotation /// 0031491 // nucleosome binding // inferred from sequence or structural similarity /// 0032184 // SUMO polymer binding // inferred from sequence or structural similarity /// 0033142 // progesterone receptor binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // non-traceable author statement
AB000584_at AB000584 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000584, class A, 20 probes, 20 in AB000584 618-1032, Human mRNA for TGF-beta superfamily protein, complete cds AB000584 growth differentiation factor 15 GDF15 9518 NM_004864 0007165 // signal transduction // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation
AB000816_s_at AB000816 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000816, class A, 20 probes, 20 in AB000816 783-1357, Human mRNA for BMAL1d, partial cds. /gb=AB000816 /ntype=RNA AB000816 aryl hydrocarbon receptor nuclear translocator-like ARNTL 406 NM_001030272 /// NM_001030273 /// NM_001178 /// XM_005252928 /// XM_005252929 /// XM_005252930 /// XM_006718233 /// XM_006718234 /// XM_006718235 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007623 // circadian rhythm // traceable author statement /// 0032007 // negative regulation of TOR signaling // inferred from sequence or structural similarity /// 0032922 // circadian regulation of gene expression // inferred from direct assay /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0042634 // regulation of hair cycle // inferred from mutant phenotype /// 0042753 // positive regulation of circadian rhythm // inferred from sequence or structural similarity /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0045599 // negative regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050767 // regulation of neurogenesis // inferred from sequence or structural similarity /// 0050796 // regulation of insulin secretion // inferred from sequence or structural similarity /// 0051726 // regulation of cell cycle // inferred from sequence or structural similarity /// 0051775 // response to redox state // inferred from direct assay /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 0090403 // oxidative stress-induced premature senescence // inferred from sequence or structural similarity /// 2000074 // regulation of type B pancreatic cell development // inferred from sequence or structural similarity /// 2000323 // negative regulation of glucocorticoid receptor signaling pathway // inferred from sequence or structural similarity /// 2000772 // regulation of cellular senescence // inferred from sequence or structural similarity /// 2001016 // positive regulation of skeletal muscle cell differentiation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from physical interaction /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016604 // nuclear body // inferred from electronic annotation /// 0016605 // PML body // inferred from electronic annotation /// 0033391 // chromatoid body // inferred from sequence or structural similarity 0000976 // transcription regulatory region sequence-specific DNA binding // inferred from sequence or structural similarity /// 0000982 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0001047 // core promoter binding // inferred from sequence or structural similarity /// 0001190 // RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from genetic interaction /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017162 // aryl hydrocarbon receptor binding // inferred from physical interaction /// 0043425 // bHLH transcription factor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0051879 // Hsp90 protein binding // inferred from direct assay /// 0070888 // E-box binding // inferred from direct assay
AB000895_at AB000895 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000895, class A, 20 probes, 20 in AB000895 25-385, Homo sapiens mRNA for cadherin FIB1, partial cds. /gb=AB000895 /ntype=RNA AB000895 dachsous cadherin-related 1 DCHS1 8642 NM_003737 /// NM_024542 /// XM_005253207 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // inferred from sequence or structural similarity /// 0016339 // calcium-dependent cell-cell adhesion // non-traceable author statement /// 0022008 // neurogenesis // inferred from sequence or structural similarity /// 0035329 // hippo signaling // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation
AB000896_at AB000896 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000896, class A, 20 probes, 20 in AB000896 49-391, Homo sapiens mRNA for cadherin FIB2, partial cds. /gb=AB000896 /ntype=RNA AB000896 protocadherin gamma subfamily B, 4 /// protocadherin gamma subfamily B, 5 PCDHGB4 /// PCDHGB5 8641 56101 NM_003736 /// NM_018925 /// NM_032098 /// NM_032099 0007155 // cell adhesion // traceable author statement /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // non-traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay
AB000897_at AB000897 Homo sapiens Oct 6, 2014 Exemplar sequence GenBank AB000897, class A, 20 probes, 20 in AB000897 43-373, Homo sapiens mRNA for cadherin FIB3, partial cds. /gb=AB000897 /ntype=RNA AB000897 protocadherin gamma subfamily A, 12 PCDHGA12 26025 NM_003735 /// NM_032094 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // non-traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay

Total number of rows: 7129

Table truncated, full table size 15876 Kbytes.






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