NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL8209 Query DataSets for GPL8209
Status Public on Feb 20, 2009
Title Agilent-015061 C. elegans Oligo Microarray 4x44K G2519F (Probe Name version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Caenorhabditis elegans
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G2519F
 
Description
This microarray provides genome-wide coverage of C. elegans with over 21,000 predicted genes from WormBase, a public C. elegans genome database.

The ID column represents the Agilent probe names.
 
Submission date Feb 20, 2009
Last update date Apr 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (31) GSM372571, GSM372572, GSM505303, GSM505304, GSM505305, GSM505306 
Series (4)
GSE14913 C. elegans embryos: control vs. mes-2 mutant
GSE20148 C. elegans microarrays: daf-2(-) vs. daf-2(-) xbp-1(-)
GSE20558 Adult Caenorhabditis elegans: wild-type (N2) and mir-243 mutant worms
Relations
Alternative to GPL7727

Data table header descriptions
ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeq Accession number
GB_ACC GenBank Accession number
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
A_12_P100000 A_12_P100000 FALSE NM_001047268 NM_001047268 182402 fbxa-158 F-box A protein Cel.24147 wb|C08E3.10a|wb|C08E3.10b|ref|NM_001047268|ref|NM_001047269 chrII:1619962-1619903 This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. [Source: WormBase] [C08E3.10a] GO:0040010(positive regulation of growth rate) TTTATAGTTATTTGTTCCGAATCACAAAGTTGAGCTACAGATACGATTACAACGATTGGC
A_12_P100001 A_12_P100001 FALSE chrIII:008436514-008436455 AAAGATAATTATTTATCACTTTGTTCTTATTCTATTACGTAATTTCTTTGAATTCTTGAA
A_12_P100002 A_12_P100002 FALSE NM_071140 NM_071140 188270 fbxa-201 F-box A protein Cel.23837 wb|T08B1.5|ref|NM_071140|tc|NP006945 chrV:1977191-1977250 F-box A protein family member (fbxa-201) [Source:RefSeq_peptide;Acc:NP_503541] [T08B1.5] TTTTCCTATCAAATCGGCAATTCTTCCTTCACTATCCACTGGCAAAAACGTGGATTCCAG
A_12_P100003 A_12_P100003 FALSE NM_075964 NM_075964 186105 F52D2.6 hypothetical protein Cel.24609 wb|F52D2.6|ref|NM_075964|tc|TC139160 chrX:1980423-1980482 Putative uncharacterized protein; [Source:UniProtKB/TrEMBL;Acc:Q9TXM3] [F52D2.6] TTGCACACCTTCACACTACAGATATGGTCTTGTACAAGAATGCAAAACGTGGTTGGCTCA
A_12_P100004 A_12_P100004 FALSE NM_064828 NM_064828 189252 W06E11.1 hypothetical protein Cel.9927 wb|W06E11.1|ref|NM_064828 chrIII:645462-645521 Putative uncharacterized protein; [Source:UniProtKB/TrEMBL;Acc:Q23206] [W06E11.1] GO:0002119(nematode larval development)|GO:0003899(DNA-directed RNA polymerase activity)|GO:0005634(nucleus)|GO:0006350(transcription)|GO:0006898(receptor-mediated endocytosis)|GO:0009792(embryonic development ending in birth or egg hatching)|GO:0016246(RNA interference)|GO:0040007(growth)|GO:0040010(positive regulation of growth rate)|GO:0040011(locomotion) AGAAATTTAATGAATTGGAGAAGTCGCTGCAGGAATCGCCTGCCAAGTCCCCGAAGAAAA
A_12_P100005 A_12_P100005 FALSE NM_074719 NM_074719 180096 oac-7 O-ACyltransferase homolog Cel.4624 wb|C31A11.7|ref|NM_074719|tc|TC148595 chrV:16314653-16314712 O-ACyltransferase homolog family member (oac-7) [Source:RefSeq_peptide;Acc:NP_507120] [C31A11.7] GO:0016021(integral to membrane)|GO:0016747(transferase activity, transferring acyl groups other than amino-acyl groups) AGAACTCACACAGGTGGAAACTTTAGTACAAGAGAGCAACGCGGGAAGTGAAGAGCAATT
A_12_P100006 A_12_P100006 FALSE NM_075535 NM_075535 181882 B0250.4 hypothetical protein Cel.9443 wb|B0250.4|ref|NM_075535|tc|TC149246 chrV:20454624-20454565 Protein B0250.4, partially confirmed by transcript evidence; [Source:UniProtKB/TrEMBL;Acc:Q9XVF8] [B0250.4] GO:0005622(intracellular)|GO:0008270(zinc ion binding) CGAGAATGATTAAGCACATCCCGTCAGGTGGCACATCTCTCCTACCATGTGAAAAAGAAA
A_12_P100007 A_12_P100007 FALSE NM_063696 NM_063696 174532 cutl-2 CUTiclin-Like Cel.13955 wb|Y53C12B.6|ref|NM_063696|tc|TC139561 chrII:9721853-9721794 CUTiclin-Like family member (cutl-2) [Source:RefSeq_peptide;Acc:NP_496097] [Y53C12B.6] CCTGAAAAAATGGAGCATCATTGGACGAAGAGCTGCTCATTTGGAAGCTACTCTGGAATT
A_12_P100008 A_12_P100008 FALSE NM_001027708 NM_001027708 3564848 Y47D3A.32 hypothetical protein Cel.29945 wb|Y47D3A.32|ref|NM_001027708|tc|NP856384 chrIII:11256358-11256417 Putative uncharacterized protein; [Source:UniProtKB/TrEMBL;Acc:Q7YWP7] [Y47D3A.32] GO:0016021(integral to membrane) TTACTATCGTCACTGGTGGCGTGGACGTCAATGTGAAAAAGCGGCGAAAAAAGAGGAAAA
A_12_P100009 A_12_P100009 FALSE tc|NP232177 chrIV:4128998-4128939 contains weak similarity to Plasmodium yoelii rhoptry protein S6 (GB:U36927) [NP232177] GATCGAAGAGCTTGAAAGAGCTGCAAGCACAGTTGAAAATATCGTGTGGACGAAGAGAAT
A_12_P100010 A_12_P100010 FALSE NM_061410 NM_061410 185855 F46F5.1 hypothetical protein Cel.26853 wb|F46F5.1|ref|NM_061410|tc|NP008799 chrII:790076-790017 Putative uncharacterized protein; [Source:UniProtKB/TrEMBL;Acc:Q9TXX3] [F46F5.1] ACTACTTTCCCTGGAGACCGTCAACATCTGAAGCAATTGTTTGCCTCTTGTGGAAGACAT
A_12_P100011 A_12_P100011 FALSE NM_073343 NM_073343 185098 F28H7.7 hypothetical protein Cel.3830 wb|F28H7.7|ref|NM_073343|tc|TC148365 chrV:10751106-10751047 Protein F28H7.7, partially confirmed by transcript evidence; [Source:UniProtKB/TrEMBL;Acc:Q19894] [F28H7.7] GO:0016021(integral to membrane) ACGTACAATTTACGTCTCCGAGACCAACTTCTAACAAATGTTCTTCAAATTCTTTATGCA
A_12_P100012 A_12_P100012 FALSE NM_077520 NM_077520 185121 F29G6.2 hypothetical protein Cel.1102 wb|F29G6.2|ref|NM_077520 chrX:11509448-11509389 Protein F29G6.2, partially confirmed by transcript evidence; [Source:UniProtKB/TrEMBL;Acc:Q93635] [F29G6.2] GO:0005515(protein binding) CTCGAGATGAAGACATTGAACTGGTAGTCCCAAAGGCAGTGGCAAGTACATCGAGTAAAT
A_12_P100013 A_12_P100013 FALSE wb|T28F3.7|tc|NP395013 chrIV:17302256-17302197 none available [T28F3.7] GCTTACGTGTGCATTTGTAATAAAGGATACTCGGGGGTATCGTGTGAAACAAAAGTGTAA
A_12_P100014 A_12_P100014 FALSE NM_071861 NM_071861 178858 K03B4.2 hypothetical protein Cel.34227 wb|K03B4.2|ref|NM_071861|tc|TC135699 chrV:4689103-4689162 Putative uncharacterized protein; [Source:UniProtKB/TrEMBL;Acc:Q21173] [K03B4.2] CACACTTTTCCCCAGCGGTTCCATGTTTCTACCCCGATACTCTTTTTCAATTTTGCCCTA
A_12_P100015 A_12_P100015 FALSE NM_070898 NM_070898 190063 srx-5 Serpentine Receptor, class X Cel.28223 wb|Y49C4A.4|ref|NM_070898|tc|NP372081 chrV:701519-701578 Serpentine Receptor, class X family member (srx-5) [Source:RefSeq_peptide;Acc:NP_503299] [Y49C4A.4] GO:0007186(G-protein coupled receptor protein signaling pathway)|GO:0016021(integral to membrane) GTTCCATTTTTGCTCACACTTAACTGTTCCTCGAACTCTGTAATTTTTCTGATGTACAAC
A_12_P100016 A_12_P100016 FALSE NM_068156 NM_068156 189531 Y24D9A.6 hypothetical protein Cel.23201 wb|Y24D9A.6|ref|NM_068156|tc|TC139101|tc|TC139100 chrIV:4400112-4400053 Putative uncharacterized protein; [Source:UniProtKB/TrEMBL;Acc:Q9N556] [Y24D9A.6] GO:0016021(integral to membrane)|GO:0019915(lipid storage) AGTGAAAAGGAATGTACTTGATAGGTGTCTCTGTGTGTGCTTGGAAAGGAAGAAGAAGAA
A_12_P100017 A_12_P100017 FALSE NM_073139 NM_073139 187653 sru-36 Serpentine Receptor, class U Cel.27418 wb|R07B5.6|ref|NM_073139|tc|NP013775 chrV:9843070-9843129 Serpentine Receptor, class U family member (sru-36) [Source:RefSeq_peptide;Acc:NP_505540] [R07B5.6] GO:0004888(transmembrane receptor activity)|GO:0007606(sensory perception of chemical stimulus)|GO:0016020(membrane)|GO:0016021(integral to membrane) CATGTTTCGTCGAAAACGAACAATAAGCCAGTCTACGGCAGTAACGACTATACCGAGAAT
A_12_P100018 A_12_P100018 FALSE NM_062557 NM_062557 3565668 srb-13 Serpentine Receptor, class B (beta) Cel.34572 wb|F58A6.11|ref|NM_062557|tc|NP022502 chrII:5155482-5155423 Serpentine Receptor, class B (beta) family member (srb-13) [Source:RefSeq_peptide;Acc:NP_494958] [F58A6.11] GO:0004888(transmembrane receptor activity)|GO:0007606(sensory perception of chemical stimulus)|GO:0016021(integral to membrane) GAGCAAGGAACTATGATAATATTACTGCTAATCAATGGGCTACAATTACTCAGATAGGAT
A_12_P100019 A_12_P100019 FALSE NM_066930 NM_066930 189909 Y45F3A.5 hypothetical protein Cel.28181 wb|Y45F3A.5|ref|NM_066930|tc|NP010957 chrIII:10585855-10585796 Protein Y45F3A.5, partially confirmed by transcript evidence; [Source:UniProtKB/TrEMBL;Acc:Q9XWY9] [Y45F3A.5] AGTGAGCCCCCCGCACAAGGTGTGGTTACTCGTGCTGCCGCTCAAAAAGCTCGGGAAGCT

Total number of rows: 20476

Table truncated, full table size 9906 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap