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Platform GPL8490

Query DataSets for GPL8490

Status

Public on Apr 27, 2009

Title

Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2)

Technology type

oligonucleotide beads

Distribution

commercial

Organism

Homo sapiens

Manufacturer

Illumina, Inc.

Manufacture protocol

See manufacturer's website

Description

HumanMethylation27 DNA Analysis BeadChip allows researchers to interrogate 27,578 highly informative CpG sites per sample at single-nucleotide resolution. This 12-sample BeadChip features content derived from the well-annotated NCBI CCDS database (Genome Build 36) and is supplemented with more than 1,000 cancer-related genes described in published literature. Probe content has been enriched to deeply cover more than 150 well-established cancer genes known to show differential methylation patterns. HumanMethylation27 BeadChip content also targets the promoter regions of 110 miRNA genes.

Web link

http://www.illumina.com/pages.ilmn?ID=243

Submission date

Apr 27, 2009

Last update date

Jan 02, 2015

Organization

Illumina Inc.

E-mail(s)

expression@illumina.com, techsupport@illumina.com

Phone

1 800 809 4566

URL

http://www.illumina.com

Street address

9885 Towne Centre Drive

City

San Diego

State/province

ZIP/Postal code

92121

Country

USA

Samples (19058)

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GSM401538, GSM401539, GSM401540, GSM401541, GSM401542, GSM401543

Series (348)

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GSE15745	Abundant Quantitative Trait Loci for CpG Methylation and Expression Across Human Brain Tissues
GSE17448	Methylation Pattern of Human Mesenchymal Stromal Cells
GSE17648	Epigenomic Analysis of Aberrantly Methylated Genes in Colorectal Cancer

GSE17769	An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer: DNA methylation
GSE18458	Genome wide DNA Methylation Study in Cornelia de Lange Syndrome
GSE19034	EYA4 is a non-small cell lung cancer tumor suppressor located in the susceptibility locus on chromosome 6q
GSE19711	Genome wide DNA methylation profiling of United Kingdom Ovarian Cancer Population Study (UKOPS)
GSE20067	Genome wide DNA methylation profiling of diabetic nephropathy in type 1 diabetes mellitus
GSE20080	Epigenome analysis of normal and preinvasive cervical smear samples
GSE20236	Human Aging-associated DNA Hypermethylation Occurs Preferentially at Bivalent Chromatin Domains
GSE20242	Human Aging-associated DNA Hypermethylation Occurs Preferentially at Bivalent Chromatin Domains
GSE20712	Epigenetic portraits of human breast cancers (methylation data)
GSE20713	Epigenetic portraits of human breast cancers
GSE20868	Epigenetic portraits of human breast cancers (HCT116 cell line data)
GSE20872	Methylation data from Down syndrome and non-Down syndrome pediatric acute lymphoblastic leukemia cases and controls
GSE20945	Effects of DAC treatment
GSE21094	Genomic profiling in Down syndrome pediatric acute lymphoblastic leukemia
GSE21232	DNA methylation profiling of male human pancreatic islets identifies loci for type 2 diabetes
GSE21282	Epigenetic and immune function profiles associated with post-traumatic stress disorder
GSE21304	Aberrant global methylation patterns affect the molecular pathogenesis and prognosis of human multiple myeloma
GSE21541	An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer
GSE21554	An integrated genomic and expression analysis of 7q deletion in splenic marginal zone lymphoma (Main Study)
GSE22091	A Novel Approach Identifies New Differentially Methylated Regions (DMRs) Associated with Imprinted Genes
GSE22249	Epigenetic portraits of human breast cancers (methylation data 2)
GSE22281	Epigenetic portraits of human breast cancers (various cell lines methylation data)
GSE22595	Methylation Pattern of Human Dermal Fibroblasts
GSE22867	DNA Methylation Profiling of Glioblastoma: Impact on Gene Expression and Clinical Outcome (Illumina)
GSE22874	Prognostic Gene Expression Signature of Carcinoma Associated Fibroblasts in Non-Small Cell Lung Cancer
GSE22891	DNA Methylation Profiling of Glioblastoma: Impact on Gene Expression and Clinical Outcome
GSE23311	DNA Methylation Analysis in Human Chorionic Villus and Maternal Blood Cells
GSE23388	DNA methylation and expression profiling study for prostate cancer
GSE23638	Genome-wide analysis of autosomal sex differences in human DNA methylome
GSE23693	Aberrant silencing of cancer-related genes by CpG hypermethylation occurs independently of their spatial organization in the nucleus
GSE23789	DNA methylation titration data from two samples with known methylation differences
GSE24087	Epigenome analysis in HPV(-) and HPV(+) squamous cell carcinoma cell lines
GSE24091	Expression and methylation analyses of HPV(-) and HPV(+) squamous cell carcinoma cell lines
GSE24676	DNA Methylation Dynamics in Human Induced Pluripotent Stem Cells over Time
GSE24787	Promoter methylation in HNSCC tumor cell lines is significantly different from primary tumors and xenografts
GSE24884	Methylation RIKEN-cohort
GSE25033	Progression Free Survival in Ovarian Cancer is Reflected in Epigenetic DNA-Methylation Profiles
GSE25047	Identification of DNA Methylation Markers for Lineage Commitment of in vitro Hepatogenesis [methylation profiling]
GSE25048	Identification of DNA Methylation Markers for Lineage Commitment of in vitro Hepatogenesis
GSE25062	Genome-scale analysis of aberrant DNA methylation in colorectal cancer
GSE25083	Global hypomethylation identifies loci targeted for hypermethylation in head and neck cancer: normal head and neck tissue
GSE25089	Global hypomethylation identifies loci targeted for hypermethylation in head and neck cancer: HNSCC
GSE25091	Global hypomethylation identifies loci targeted for hypermethylation in head and neck cancer: blood controls
GSE25093	Global hypomethylation identifies loci targeted for hypermethylation in head and neck cancer
GSE25301	Obesity related methylation changes in DNA of peripheral blood leukocytes
GSE25395	Altered DNA Methylation in Leukocytes with Trisomy 21
GSE25538	EQUIVALENCE OF CONVENTIONALLY-DERIVED AND PARTHENOTE-DERIVED HUMAN EMBRYONIC STEM CELLS
GSE25706	Epigenome analysis of patients with various myeloid malignancies including differential levels of 5-hydroxymethylcytosine
GSE25869	DNA methylation represents one of the key regulator that transcriptional control of highly expressed genes in gastric cancer.
GSE25892	Epigenetic Vestiges of Early Developmental Adversity: Child Stress Exposure and Adolescent DNA Methylation
GSE25966	Genome-wide Mapping of Imprinted Genes by DNA Methylation Profiling of Human Placentas from Triploidies
GSE26033	A Genome-wide Study of DNA Methylation Patterns and Gene Expression Levels in Multiple Human and Chimpanzee Tissues
GSE26126	DNA methylation profiling reveals novel biomarkers and important roles for DNA methyltransferases in prostate cancer
GSE26133	DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
GSE26164	Regulation of DNA methylation by CK2-mediated phosphorylation of DNMT3A (Beadchip)
GSE26211	The effects of EBV transformation on methylation levels
GSE26212	The effects of EBV transformation on gene expression and methylation levels
GSE26319	Epigenome analysis of normal and cancer tissues in prostate cancer
GSE26349	Breast Cancer Methylomes Establish an Epigenomic Foundation for Metastasis
GSE26433	Coordinated Chromatin Remodeling induced by Demethylation requires SRCAP mediated H2A.Z exchange [Methylation]
GSE26519	Replicative senescence of mesenchymal stem cells causes DNA methylation changes which correlate with repressive histone marks
GSE26543	The influence of aging, environmental exposures and local sequence features on the variation of DNA methylation in blood
GSE26683	Wide ranging DNA methylation differences of primary trophoblast cell populations and derived-cell lines
GSE26685	Coordinated Chromatin Remodeling induced by Demethylation requires SRCAP mediated H2A.Z exchange
GSE26791	The HDAC inhibitor panobinostat (LBH589) inhibits Acute Lymphoblastic leukemia (ALL) in vitro and in vivo in a new characterized human ALL mice model (Illumina)
GSE26807	The HDAC inhibitor panobinostat (LBH589) inhibits Acute Lymphoblastic leukemia (ALL) in vitro and in vivo in a new characterized human ALL mice model
GSE26974	Sperm DNA methylation
GSE26982	Integrative DNA methylation and gene expression analyses identify DNA packaging and epigenetic regulatory genes associated with low motility sperm
GSE26989	DNA methylation analysis of ovarian cancers and normal peripheral blood lymphocyte DNA by Illumina Infinium platform
GSE26990	Analysis of Promoter Methylation in Breast Cancer
GSE27044	Methylation Profiling of Blood DNA from Sibling Discordant for Autism
GSE27097	Pediatric age-associated DNA methylation
GSE27130	Anti-cancer drug sensitive DNA methylation marker research
GSE27146	Population-specificity of human DNA methylation
GSE27226	HDACI and DAC induce specific epigenetic profile in DLBCL
GSE27284	Prognostic Gene Expression Signature of Carcinoma Associated Fibroblasts in Non-Small Cell Lung Cancer [methylation profiling]
GSE27317	Correlation between maternal age and newborn DNA methylation
GSE27860	Genome wide analysis reveals association of a FTO gene variant with epigenetic changes of several genes in human blood
GSE27895	Global DNA methylation profiling of CD4+ T cells from patients with systemic lupus erythematosus
GSE27899	Methylation profiling in Ulcerative colitis
GSE28217	NID2 and HOXA9 promoter hypermethylation as biomarkers to prevent and detect Oral Cavity Squamous Cell Carcinoma
GSE28356	DNA Methylation Profiling of Melanoma Cell Lines
GSE28368	DNA methylation data from nasal epithelial cells of human smokers and nonsmokers
GSE28461	Promoter methylation data from ALL diagnosis and relapse pediatric acute lymphoblastic leukemia cases
GSE28462	Integrated Genomic Analysis of Relapsed Childhood Acute Lymphoblastic Leukemia reveals therapeutic strategies
GSE28525	Methylation screening of reciprocal genome-wide UPDs identifies novel human specific imprinted genes
GSE28647	Genome-wide Methylation Profiling Identifies Candidate DNA Methylation Drivers of Acquired Cisplatin Resistance in Ovarian Cancer.
GSE28648	Genome-wide methylation and expression profiling study identifies candidate DNA methylation drivers of acquired cisplatin resistance in ovarian cancer.
GSE28746	Epigenome analysis of male identical twin pairs discordant for sexual orientation, age 21 to 55.
GSE29189	Genome-scale DNA methylation profiling of TEL/AML positive childhood acute lymphoblastic leukaemia
GSE29490	A Genome-wide DNA Methylation Study in Colorectal Carcinoma
GSE29661	Cellular aging can be monitored by DNA-methylation changes at specific CpG sites
GSE29872	Cancer-related epigenome changes associated with reprogramming to induced pluripotent stem cells (methylation data)
GSE29873	Cancer-related epigenome changes associated with reprogramming to induced pluripotent stem cells
GSE30090	A promoter DNA demethylation landscape of human hematopoietic differentiation
GSE30229	Peripheral blood DNA methylation profiles are predictive of head and neck squamous cell carcinoma
GSE30456	Maintenance of hESCs in mesenchymal stem cell-conditioned media augments hematopoietic specification
GSE30601	Epigenetic analysis of gastric cancer
GSE30640	Changes in DNA methylation In cultered WI-38 cells over passages
GSE30653	Recurrent Variations in DNA Methylation in Human Pluripotent Stem Cells and their Differentiated Derivatives [Illumina Infinium 27K DNA Methylation]
GSE30654	Recurrent Variations in DNA Methylation in Human Pluripotent Stem Cells and their Differentiated Derivatives
GSE30758	Epigenome analysis of normal cells from the uterine cervix in a nested prospective case control study within the ARTISTIC trial
GSE30759	Epigenome analysis of normal and cancer tissue from the uterine cervix
GSE30760	Cervical cancer
GSE30844	Somatic mosaic IDH1 and IDH2 mutations are associated with enchondroma and spindle cell haemangioma in Ollier disease and Maffucci syndrome
GSE31133	DNA methylation alterations and transcriptional gene silencing induced by IDH1 R132H mutation [Illumina]
GSE31134	DNA methylation alterations and transcriptional gene silencing induced by IDH1 R132H mutation
GSE31337	Methylation profiling of enchondromas with and without IDH1 mutations
GSE31362	Androgen receptor function links human sexual dimorphism to DNA methylation
GSE31600	TET2 mutations are associated with specific methylation profiles in patients with Chronic Myelomonocytic Leukemia
GSE31680	Methylome of Fetal and Maternal Monocytes and Macrophages at the Feto-Maternal Interface
GSE31699	Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma
GSE31770	Epigenetic Impact of Long-Term Shiftwork: Poly Evidence from Cricadian Genes and Whole-Genome Methylation Analyses
GSE31781	Evidence for widespread changes in promoter methylation profile in human placenta in response to increasing gestational age and environmental/stochastic factors.
GSE31788	Aberrant DNA methylation epigenotype expanding to non-polycomb target genes, induced by Epstein-Barr virus infection in human gastric cancer [Illumina Methylation]
GSE31789	DNA methylation epigenotype expanding to non-polycomb target genes, induced by Epstein-Barr virus infection in human gastric cancer
GSE31826	Methylation analysis of samples from a phase II clinical trial of decitatbine in combination with carboplatin in patients with recurrent, platinum resistant epithelial ovarian cancer
GSE31835	Global methylation analysis of psoriatic (involved and uninvolved) and control skin
GSE31979	Genome-wide methylation analysis detects genes specific to breast cancer hormone receptor status and risk of recurrence
GSE32251	Prognostic DNA Methylation Patterns in Cytogenetically Normal Acute Myeloid Leukemia are predefined by Stem Cell Chromatin Marks [methylation]
GSE32252	Prognostic DNA Methylation Patterns in CN-AML; a genome wide methylation and gene expression study
GSE32275	Analysis of DNA methylation profiles in colorectal cancer cells treated with boswellic acids
GSE32276	Boswellic acid induced changes in gene expression and methylation in colorectal cancer cells
GSE32393	Epigenome analysis of breast tissue from women with and without breast cancer.
GSE32396	Epigenome analysis of white blood cells from healthy women with and without BRCA1 mutation.
GSE32861	Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression
GSE32866	Genome-scale DNA methylation profiling of lung adenocarcinoma: validation using Ontario Tumor Bank samples
GSE32867	DNA methylation and gene expression in lung adenocarcinoma
GSE32925	Using DNA methylation to detect dysplasia/early neoplasia in Barrett's carcinogenesis
GSE33065	Genome-wide DNA methylation profiling of CpG islands in breast cancer
GSE33181	Feasibility and Interpretation of the Genome-wide Infinium Methylation Data Derived from Ligated Formalin Fixed Paraffin Embedded Paired Tumor and Normal Tissue.
GSE33202	Cancer Outlier Gene Profile Sets Elucidate Pathways and Patient-Specific Targets in Head and Neck Squamous Cell Carcinoma [Illumina HumanMethylation]
GSE33232	Cancer Outlier Gene Profile Sets Elucidate Pathways and Patient-Specific Targets in Head and Neck Squamous Cell Carcinoma
GSE33422	Epigenome analysis of endometrium tissue from women with metastatic endometrial cancer.
GSE33510	DNA methylation analyses of urothelial carcinoma reveal distinct epigenetic subtypes and an association between gene copy number and methylation status
GSE33896	Genome-wide CpG methylation during osteogenic and myogenic differentiation from adipose- derived stem cells.
GSE34008	Epigenome analysis of genomic DNA isolated from whole blood of non-diabetic control and type-2 diabetic individuals
GSE34035	Epigenome analysis of saliva samples from alcohol users
GSE34068	Widespread monoallelic methylation of colorectal cancer associated tumour suppressor genes, including multiple Wnt pathway inhibitors, in Hyperplastic Polyposis Syndrome.
GSE34099	Epigenome analysis of control and neurodevelopmental disorder lymphoblastoid cell lines
GSE34174	Whole Genome Methylation Analysis of Metastatic Castration Resistant Prostate Cancer
GSE34200	The NIH Human Pluripotent Stem Cell Database
GSE34257	The effect of periconceptional micronutrient supplementation on offspring DNA methylation
GSE34355	Clonal Selection Drives Genetic Divergence of Metastatic Medulloblastoma [Illumina Infinium HumanMethylation27 Beadchip v1.2]
GSE34356	Clonal Selection Drives Genetic Divergence of Metastatic Medulloblastoma
GSE34869	The NIH Human Pluripotent Stem Cell Database (Illumina, methylation)
GSE35146	Epigenome analysis of normal and IPF lung tissue samples
GSE35147	Altered DNA Methylation Profile in Idiopathic Pulmonary Fibrosis
GSE35222	Prenatal smoke exposure, DNA methylation, and childhood atopic disorders
GSE35245	Genistein Cooperates with the Histone Deacetylase Inhibitor Vorinostat to Induce Cell Death in Prostate Cancer Cells (methylation data)
GSE35246	Genistein Cooperates with the Histone Deacetylase Inhibitor Vorinostat to Induce Cell Death in Prostate Cancer Cells
GSE35327	Array-based DNA-methylation profiling of fetal tissues obtained by routine invasive prenatal testing (chorionic and amniotic samples)
GSE35424	An integrated genomic and expression analysis of 7q deletion in SMZL (Illumina Infinium Human Methylation 27 array)
GSE35912	Reversal of Aberrant Cancer Methylome and Transcriptome upon Direct Reprogramming of Lung Cancer Cells [Methylation]
GSE35913	Reversal of Aberrant Cancer Methylome and Transcriptome upon Direct Reprogramming of Lung Cancer Cells.
GSE36002	Integrative analysis reveals relationships of genetic and epigenetic alterations in osteosarcoma [methylation]
GSE36004	Integrative analysis reveals relationships of genetic and epigenetic alterations in osteosarcoma.
GSE36166	Epigenetic analysis of healthy young men following a control and high-fat overfeeding diet
GSE36194	North American Brain Expression Consortium: DNA Methylation
GSE36353	Genome wide DNA Methylation analysis of benign and malignant adrenocortical tumors
GSE36534	DNA methylation screening identifies driver epigenetic events of cancer cell survival.
GSE36637	Aberrant promoter methylation and expression of UTF1 during cervix carcinogenesis
GSE36642	Neonatal DNA methylation profile in humans is specified by a complex interplay between intrauterine environmental/ genetic factors subject to tissue-specific influence
GSE36812	Epigenome analysis of cord blood samples from newborns
GSE36829	Epigenome analysis of placenta samples from newborns
GSE36831	DNA methylation and gene expression differences at growth related genes correlate with birth weight.
GSE36832	DNA Methylation Dynamics in Blood after Hematopoietic Cell Transplant
GSE37008	Factors underlying variable DNA methylation in a human community cohort
GSE37020	Epigenome analysis of smear cells from the uterine cervix consisting of 24 normals and 24 cervical intraepithelial neoplasias (all HPV+)
GSE37722	Normal early pregnancy: a transient state of epigenetic change favoring hypomethylation
GSE37740	Intermediate- and low-methylation epigenotypes do not correspond to CpG island methylator phenotype (low and -zero) in colorectal cancer.
GSE37816	DNA methylation and expression profiling study for bladder cancer [methylation]
GSE37817	DNA methylation and expression profiling study for bladder cancer
GSE37872	Epigenome analysis to identify DNA methylation changes associated with colorectal carcinogenesis
GSE37988	Methylation in Taiwanese HCC tumor and adjacent tissues
GSE38291	Genome-Wide Analysis of DNA Methylation Differences in Muscle and Fat from Monozygotic Twins Discordant for Type 2 Diabetes
GSE38532	Methylation profiling of oral squamous cell carcinoma (OSCC)
GSE38548	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer
GSE38608	Brain transcriptional and epigenetic associations with the autistic phenotype (methylation data)
GSE38609	Brain transcriptional and epigenetic associations with the autistic phenotype
GSE38646	DNA methylation alterations in response to pesticide exposure in vitro
GSE38791	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [methylation27]
GSE38804	Epigenome analysis of brain between human and chimpanzee
GSE38860	Aberrant DNA methylation at genes associated with a stem cell-like phenotype in cholangiocarcinoma tumors
GSE38873	Correlation between DNA methylation and gene expression in the brains of patients with bipolar disorder and schizophrenia
GSE39126	The human AlkB homologue 4 interacts with proteins associated with transcription (methylation)
GSE39131	Stump project -- methylation whole tissue; volar versus non-volar acral skin gene expression
GSE39135	The human AlkB homologue 4 interacts with proteins associated with transcription
GSE39198	Genome-scale methylome profiling of pheochromocytomas and paragangliomas with Illumina Infinium 27k Human Methylation arrays
GSE39626	DNA hypomethylation affects cancer-related biological functions and genes relevant in neuroblastoma pathogenesis
GSE39981	Purified human leukocyte subtype DNA methylation profiles
GSE40032	Epigenetic silencing of HAND2 is a crucial step in endometrial carcinogenesis
GSE40055	Non-CpG island promoter hypomethylation and miR-149 regulate the expression of SRPX2 in colorectal cancer
GSE40097	DNA methylation analysis of pancreatic cancer and non-malignant pancreas cell lines
GSE40099	Pancreatic cancer and non-malignant pancreas cell lines
GSE40105	The DNA methylomes of serous borderline tumours reveal subgroups with malignant-like or benign-like profiles
GSE40631	Lentiviral transduction of CD34+ cells induces genome-wide epigenetic modifications
GSE40700	CpG Methylation by Illumina Methyl27 Bead Arrays from ENCODE/HAIB
GSE40798	Epigenetic analysis of men with low birth weight following a control and high-fat overfeeding diet
GSE41037	Aging effects on DNA methylation modules in blood tissue
GSE41384	Methylation profiling in intraepithelial neoplasia and cervical cancer
GSE41957	Use of the B cell transcription program results in hypomethylation and overexpression of key genes in EBV-mediated conversion of resting to proliferative B cells
GSE42042	Aberrant DNA methylation profiling of classic Philadelphia Negative Myeloproliferative Neoplasms
GSE42043	A panel of CpG methylation patterns distinguishes human embryonic stem cells and induced pluripotent stem cells
GSE42079	Genome wide methylation array analysis in T-ALL
GSE42080	Promoter DNA methylation pattern identifies prognostic subgroups in childhood T-cell acute lymphoblastic leukemia
GSE42448	Comparison of DNA methylation profilings between hESCs and hiPSCs
GSE42510	Alterations in cardiac DNA methylation in human dilated cardiomyopathy
GSE42623	Effect of cigarette smoke on gene expression in mammary epithelial cells [methylation]
GSE42646	Acute hypersensitivity of pluripotent testicular cancer-derived embryonal carcinoma to low-dose 5-aza deoxycytidine (part 3)
GSE42647	Acute hypersensitivity of pluripotent testicular cancer-derived embryonal carcinoma to low-dose 5-aza deoxycytidine
GSE42668	Effect of cigarette smoke on gene expression in mammary epithelial cells
GSE42774	A genome-wide methylation study on essential hypertension in young African American Males
GSE42944	Genome-Wide Methylation Analysis of Breast Cancer Cell Lines
GSE43226	Utility of HM450 BeadArray on Mouse Samples
GSE43256	DNA methylation profiling of placental villi from karyotypically normal recurrent miscarriage
GSE43265	An epigenetic panel of NEFH and HS3ST2 relates to overall survival in human ovarian cancer .
GSE43269	Genome wide-DNA methylation analysis of articular chondrocytes reveals a cluster of osteoarthritic patients (methylation)
GSE43270	Genome wide-DNA methylation analysis of articular chondrocytes reveals a cluster of osteoarthritic patients
GSE43298	Genome-scale methylome profiling of human pheochromocytomas and paragangliomas (Illumina methylation beadchips) and mouse chromaffin cells (RRBS)
GSE44222	Single-cell derived clones from human adipose stem cells present different immunomodulatory properties.
GSE44296	Epigenome analysis of primary uveal melanoma cells, normal uveal melanocytes, neural crest stem cells, embryonic stem cells and uveal melanoma cell lines
GSE44299	Primary uveal melanoma cells, normal uveal melanocytes, neural crest stem cells, embryonic stem cells and uveal melanoma cell lines
GSE44390	DNA Methyltransferase inhibition reverses epigenetically embedded phenotypes in lung cancer preferentially affecting Polycomb target genes
GSE44424	Global CpG Methylation profiling of donor cells, induced pluripotent stem cells, and human embryonic stem cells
GSE44430	Comprehensive microarray analysis of reprogramming fidelity in a library of non-integrated induced pluripotent stem cell lines prepared with various derivation methods
GSE44446	Characterization of the DNA methylation patterns in oxaliplatin chemosensitive and chemoresistant human colorectal cancer cell lines
GSE44763	Genome-wide analysis reveals DNA methylation markers that varies with both age and obesity
GSE44847	DNA methylation analysis of Rhabdoid tumor of the kidney, Clear cell sarcoma of the kidney and Ewing's sarcoma family of tumors
GSE44870	Epigenome analysis of primary breast cancer tumors and different types of recurrences.
GSE44909	Epigenome analysis of HCC samples with paired adjacent tissue
GSE44970	Genome-wide DNA methylation profiles of human hepatocellular carcinoma
GSE45253	Epigenome analysis of primary MCL
GSE45266	Genome-wide promoter methylation analysis identifies epigenetic silencing of MAPK13 in primary cutaneous melanoma
GSE45775	DNA methylation in Hippocampus across Alzheimer Braak Stages
GSE46015	DNA methylation profiling of glioblastoma cancer stem cells
GSE46016	Epigenomic profiling of glioblastoma stem cells
GSE46802	Global analysis of DNA methylation changes during progression of oral tumorigenesis
GSE47071	5-hydroxymethylcytosine marks promoters in colon that resist hypermethylation in cancer [Methylation27 Array]
GSE47351	Methylomic analysis identifies epigenetically silenced genes and implies an activation of β-catenin signal in cervical cancer
GSE47359	Genome-wide DNA methylation profiling in cultured eutopic and ectopic endometrial stromal cells (methylation)
GSE47361	Genome-wide DNA methylation profiling in cultured eutopic and ectopic endometrial stromal cells
GSE47592	5-hydroxymethylcytosine marks promoters in colon that resist hypermethylation in cancer
GSE47879	A familial disorder of altered DNA-methylation
GSE48460	MGMT-STP27 methylation status as Predictive Marker for Response to PCV in Anaplastic Oligodendrogliomas and Oligoastrocytomas. A report from EORTC study 26951 [27K]
GSE48462	MGMT-STP27 methylation status as Predictive Marker for Response to PCV in Anaplastic Oligodendrogliomas and Oligoastrocytomas. A report from EORTC study 26951
GSE48988	Epigenome analysis of normal colon mucosa samples
GSE49053	Differentiation defective phenotypes revealed by large scale analyses of human pluripotent stem cells
GSE49277	Genome-scale methylome profiling of adrenocortical carcinomas (ACC) and adenomas (ACA)
GSE49280	Integrated genomic analyses of adrenocortical tumors (SNP array, DNA methylation, mRNA and miRNA expression).
GSE49904	Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape [blood]
GSE49905	Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape [brain]
GSE49907	Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape [kidney]
GSE49908	Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape [muscle]
GSE49909	Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape
GSE49996	Methylation analysis of normal and adenocarcinoma lung tissues
GSE50220	Epigenome analysis of irradiated and non-irradiated breast tumor tissue samples and normal controls
GSE50409	Leukocyte-adjusted epigenome-wide association studies of blood from solid tumor patients
GSE50412	Identification of CpG island methylator phenotype predicts the prognosis of small cell lung cancer
GSE50511	Methylation analysis of normal lymphocytes, HCT116, RKO and SW480
GSE50608	Global DNA methylation: Uncommon event in Oral Lichenoid Disease [Illumina HumanMethylation27 BeadChip]
GSE50835	DNA methylation analysis of PBMC from HIV and HIV/TB co-infected patients
GSE50923	Genome-wide methylation analyses in glioblastoma multiforme (GBM)
GSE51090	DNA methylation profile in well-differentiated cancer uncoves another source of diagnostic and prognostic markers
GSE51688	DNA methylation profiles of ovarian cancer cell lines
GSE51747	Comparison of the molecular profiles of human embryonic and isogenic induced pluripotent stem cells. [Illumina]
GSE51748	Comparison of the molecular profiles of human embryonic and isogenic induced pluripotent stem cells.
GSE52018	Modulation of miR-29 Expression by Alpha-fetoprotein is linked to the Hepatocellular Carcinoma Epigenome
GSE52144	Examination of genome-wide methylation changes in lung cancer cell lines A549 (A) and HTB56 (H) [HumanMethylation27 BeadChip experiments]
GSE52222	Aberrant methylation of gene associated CpG sites occurs in borderline personality disorder
GSE52238	Global indiscriminate methylation in cell-specific gene promoters following reprogramming into human induced pluripotent stem cells
GSE52391	Integrative DNA methylation and gene expression analysis in high-grade soft tissue sarcomas [methylation]
GSE52392	Integrative DNA methylation and gene expression analysis in high-grade soft tissue sarcomas
GSE52573	Genome-wide methylation profiling of multiple sporadic colorectal cancer
GSE52621	Detection of hypermethylated circulating serum DNA in metastatic breast cancer and confirmation by the cMethDNA assay
GSE53043	Methylation status of OCI Ly3 SP vs. nonSP
GSE53079	OCI Ly3 SP vs. nonSP cells
GSE53227	Epigenome analysis of human brain gliomas (part 1)
GSE53228	Epigenome analysis of human brain gliomas (part 2)
GSE53229	Epigenome analysis of human brain gliomas
GSE53516	Genome-wide promoter methylation analysis associated with malignant melanoma progression
GSE54025	Epigenome study of normal human epithelial tissues
GSE54211	Global DNA Methylation: Uncommon Event in Oral Lichenoid Disease
GSE55454	Methylation profiles of COPD small airways
GSE56074	Global DNA Methylation Levels in Lung Fibroblasts from Patients with Idiopathic Pulmonary Fibrosis Compared to Nonfibrotic Controls
GSE56342	DNA Methylation is Globally Disrupted and Associated with Expression Changes in COPD Small Airways
GSE56606	Identification of Type 1 Diabetes-Associated DNA Methylation Variable Positions That Precede Disease Diagnosis
GSE57285	DNA methylation profiling of whole blood DNA samples from BRCA1 wild-types without breast cancer and BRCA1 mutants with and without breast cancer (Prague Set 1)
GSE57300	Blood samples as a surrogate of brain methylation
GSE57484	Dietary fat quality, more than dietary fat quantity, impacts genome-wide DNA methylation patterns in Greek preadolescents
GSE57581	Stability of gene expression and epigenetic profiles highlights the utility of patient-derived paediatric acute lymphoblastic leukaemia xenografts for investigatoing molecular mechanisms of drug resistance (methylation)
GSE57633	Stability of gene expression and epigenetic profiles highlights the utility of patient-derived paediatric acute lymphoblastic leukaemia xenografts for investigatoing molecular mechanisms of drug resistance
GSE57869	DNA methylation in systemic lupus erythematosus patients
GSE57956	Methylation profile of Hepatocellular Carcinoma
GSE57958	Hepatocellular Carcinoma
GSE58045	Epigenome-Wide Scans Identify Differentially Methylated Regions for Age and Age-Related Phenotypes in a Healthy Ageing Population
GSE58119	DNA methylation profiling of serum DNA samples of the UKCTOCS cohort
GSE58272	Epigenome analysis of oropharygeal squamous cell carcinoma
GSE59274	Comprehensive Analysis of Preeclampsia-Associated DNA Methylation in the Placenta
GSE59339	Characteristic DNA methylation profiles in peripheral blood monocytes are associated with inflammatory phenotypes of asthma
GSE59724	Methylation analysis of locally advanced breast tumors treated with two drugs-doxorubicin and 5-fluorouracil
GSE60734	DNA methylation analysis of the U937 cell line
GSE61463	Epigenome analysis of peripheral blood mononuclear cell (PBMC) samples from obstructive sleep apnea patients and healthy subjects
GSE61611	Epigenetic analysis of genomic DNA isolated from whole blood of normal and leukemia individuals
GSE62082	DNA methylation profiling in pheochromocytoma and paraganglioma reveals diagnostic and prognostic markers
GSE62231	DNA Methylation in Paraganglioma
GSE62867	A comparison of genome-wide DNA methylation patterns between different tissues from patients with coronary heart disease
GSE62948	DNA Methylation and RNA Expression Profiles in Lung Adenocarcinomas [DNA methylation]
GSE62950	DNA Methylation and RNA Expression Profiles in Lung Adenocarcinomas
GSE63384	Multi-platform Characterization of Stage I Lung Adenocarcinoma (Genome-wide DNA Methylation)
GSE63940	Epigenome analysis of lung adenocarcinoma cell lines
GSE63977	Molecular portraits of epithelial, mesenchymal and hybrid states in lung adenocarcinoma and their relevance to survival
GSE64940	DNA methylation in newborn cordblood
GSE66708	NALP3 inflammasome up-regulation and CASP1 cleavage of the glucocorticoid receptor causes glucocorticoid resistance in leukemia cells
GSE67044	NALP3 inflammasome up-regulation and CASP1 cleavage of the glucocorticoid receptor causes glucocorticoid resistance in leukemia cells [HumanMethylation27]
GSE67816	Differentially methylated genes in human IL-7Ra high and low EM CD8+ T cells
GSE68319	Genome-wide DNA methylation profiles of 20 paired (normal and varicose) vein samples from the patients with varicose vein disease.
GSE68372	Profiles of 20 paired (normal and varicose) vein samples from the patients with varicose vein disease
GSE68751	caArray_EXP-550: TCGA (READ): Analysis of DNA Methylation for rectal adenocarcinoma (READ) Using Illumina Infinium Human DNA Methylation 27 platform (HumanMethylation27)(jhu-usc)
GSE71666	Integration analysis of three omics data using penalized regression methods: An application to bladder cancer (Methylation)
GSE71669	Integration analysis of three omics data using penalized regression methods: An application to bladder cancer
GSE72538	Amyloid protein-mediated differential DNA methylation status regulates gene expression in Alzheimer’s disease model cell line.
GSE72729	Integration of miRNA, mRNA and methylation profiling reveals genes aberrantly regulated associated to RETM918T mutation in Medullary Thyroid Carcinoma [methylation component]
GSE72730	Integration of miRNA, mRNA and methylation profiling reveals genes aberrantly regulated associated to RETM918T mutation in Medullary Thyroid Carcinoma
GSE73003	Genome-wide DNA methylation analysis in hepatocellular carcinoma
GSE73187	Aberrant epigenetic regulation in clear cell sarcoma of the kidney (CCSK)
GSE73808	Luminal B breast cancer subtype displays a dichotomic epigenetic pattern
GSE75268	caArray_laird-00224: TCGA Ovarian: Analysis of DNA Methylation for Ovarian Using Illumina Infinium Human DNA Methylation 27 platform (HumanMethylation27) (USC)
GSE75414	Epigenetic regulation of the homeobox gene MSX1 associates with platinum resistant disease in high grade serous epithelial ovarian cancer
GSE75729	Chronic binge alcohol administration dysregulates global regulatory gene networks associated with skeletal muscle wasting in simian immunodeficiency virus-infected macaques
GSE78940	Whole-genome DNA methylation profiles of CD4+ CD28+ and CD4+ CD28null T lymphocytes.
GSE78942	Whole-genome DNA methylation and expression profiles of CD4+ CD28+ and CD4+ CD28null T lymphocytes
GSE81788	Potential roles of DNA methylation in the initiation and establishment of replicative senescence revealed by array-based methylome and transcriptome analyses [methylation]
GSE81798	Potential roles of DNA methylation in the initiation and establishment of replicative senescence revealed by array-based methylome and transcriptome analyses
GSE83845	Methylation profiles of lung adenocarcinoma patients in Taiwan
GSE98531	DNA methylation instability by BRAF-mediated TET silencing and lifestyle-exposure divides colon cancer pathways [tumor, paired normal]
GSE98534	DNA methylation instability by BRAF-mediated TET silencing and lifestyle-exposure divides colon cancer pathways
GSE114131	Germline Copy Number Variants are Associated with Methylation Variation in the Genome
GSE118872	Methylation profile of ewing sarcoma cell lines
GSE120341	Aberrant transcriptomes and DNA methylomes define pathways that drive pathogenesis and loss of brain laterality/asymmetry in schizophrenia and bipolar disorder [Illumina]
GSE120342	Aberrant transcriptomes and DNA methylomes define pathways that drive pathogenesis and loss of brain laterality/asymmetry in schizophrenia and bipolar disorder
GSE137481	Epithelial Tumour Suppressor ELF3 is a Lineage-Specific Amplified Oncogene in Lung Adenocarcinoma
GSE139032	DNA methylation profiling of lung adenocarcinomas and patient-matched non-malignant lung
GSE165584	Epigenome analysis of parent and radioresistant OSCC cells(OML1 and OML1R ).
GSE167290	Epigenome analysis of parent and radioresistant oral cancer cells ( OCSL).

Data table header descriptions
ID	Illumina probe ID
Name
IlmnStrand
AddressA_ID
AlleleA_ProbeSeq
AddressB_ID
AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
Ploidy
Species
Source
SourceVersion
SourceStrand
SourceSeq
TopGenomicSeq
Next_Base
Color_Channel
TSS_Coordinate
Gene_Strand
Gene_ID
Symbol
Synonym
Accession
GID
Annotation
Product
Distance_to_TSS
CPG_ISLAND
CPG_ISLAND_LOCATIONS
MIR_CPG_ISLAND
RANGE_GB
RANGE_START
RANGE_END
RANGE_STRAND
GB_ACC
ORF

Data table

Name

IlmnStrand

AddressA_ID

AlleleA_ProbeSeq

AddressB_ID

AlleleB_ProbeSeq

GenomeBuild

Chr

MapInfo

Ploidy

Species

Source

SourceVersion

SourceStrand

SourceSeq

TopGenomicSeq

Next_Base

Color_Channel

TSS_Coordinate

Gene_Strand

Gene_ID

Symbol

Synonym

Accession

GID

Annotation

Product

Distance_to_TSS

CPG_ISLAND

CPG_ISLAND_LOCATIONS

MIR_CPG_ISLAND

RANGE_GB

RANGE_START

RANGE_END

RANGE_STRAND

GB_ACC

ORF

cg00000292

TOP

990370

AAACATTAATTACCAACCACTCTTCCAAAAAACACTTACCATTAAAACCA

6660678

AAACATTAATTACCAACCGCTCTTCCAAAAAACACTTACCATTAAAACCG

28797601

diploid

Homo sapiens

NCBI:RefSeq

36.1

TOP

CGGCCTCAATGGTAAGTGTCCCTTGGAAGAGCGGCTGGTAATTAATGCCC

TGGGGTGAGTGAGACCACGGGCCTCACCCCGGACCAAGTTAAGCGGAATCTGGAGAAATA[CG]GCCTCAATGGTAAGTGTCCCTTGGAAGAGCGGCTGGTAATTAATGCCCTCCTGCACCCCC

Red

28797310

GeneID:487

ATP2A1

ATP2A; SERCA1;

NM_173201.2

GI:47132613

isoform a is encoded by transcript variant a; sarcoplasmic/endoplasmic reticulum calcium ATPase 1; calcium pump 1; SR Ca(2+)-ATPase 1; calcium-transporting ATPase sarcoplasmic reticulum type; fast twitch skeletal muscle isoform; endoplasmic reticulum class 1/2 Ca(2+) ATPase; go_component: membrane; go_component: integral to membrane; go_component: sarcoplasmic reticulum; go_component: smooth endoplasmic reticulum; go_function: ATP binding; go_function: hydrolase activity; go_function: nucleotide binding; go_function: calcium ion binding; go_function: magnesium ion binding; go_function: calcium-transporting ATPase activity; go_function: hydrolase activity; acting on acid anhydrides; catalyzing transmembrane movement of substances; go_process: metabolism; go_process: cation transport; go_process: proton transport; go_process: calcium ion transport; go_process: regulation of striated muscle contraction

ATPase; Ca++ transporting; fast twitch 1 isoform a

291

TRUE

16:28797486-28797825

NC_000016.8

28797486

28797825

NM_173201.2

487

cg00002426

TOP

6580397

AATATAATAACATTACCTTACCCATCTTATAATCAAACCAAACAAAAACA

6100343

AATATAATAACATTACCTTACCCGTCTTATAATCAAACCAAACGAAAACG

57718583

diploid

Homo sapiens

NCBI:RefSeq

36.1

TOP

CGCTCTCGTCTGGTTTGATCACAAGACGGGCAAGGTAATGTCACCACATT

CCGCTGTCGACCAGCGCAGAATAATGCCACTTTTGATTGCAAAGTGCTATCAAGGAACCA[CG]CTCTCGTCTGGTTTGATCACAAGACGGGCAAGGTAATGTCACCACATTGTCCAGCGGCAT

Red

57718214

GeneID:7871

SLMAP

SLAP; KIAA1601;

NM_007159.2

GI:56550042

Sarcolemmal-associated protein; go_component: integral to plasma membrane; go_component: smooth endoplasmic reticulum; go_function: unfolded protein binding; go_process: protein folding; go_process: muscle contraction

sarcolemma associated protein

369

TRUE

3:57716811-57718675

NC_000003.10

57716811

57718675

NM_007159.2

7871

cg00003994

TOP

7150184

AATAATAATAATACCCCCTATAATACTAACTAACAAACATACCCTCTTCA

7150392

AATAATAATAATACCCCCTATAATACTAACTAACAAACATACCCTCTTCG

15692387

diploid

Homo sapiens

NCBI:RefSeq

36.1

BOT

GGTGGTGGTGGTGCCCCCTGTGATGCTGGCTGGCAAACATGCCCTCTTCG

GGTGGTGGTGGTGGTGGTGGTGGTGCCCCCTGTGATGCTGGCTGGCAAACATGCCCTCTT[CG]TTGGGGTATCCCGCGATTATGCAAGATGAGGAAGAAGTAGAGAGCTCGGGGTAAGACATA

Red

15692819

GeneID:4223

MEOX2

GAX; MOX2;

NM_005924.3

GI:55956906

growth arrest-specific homeo box; go_component: nucleus; go_function: transcription factor activity; go_process: circulation; go_process: development; go_process: regulation of transcription; DNA-dependent

mesenchyme homeo box 2

432

TRUE

7:15691512-15693551

NC_000007.12

15691512

15693551

NM_005924.3

4223

cg00005847

BOT

4850717

TACTATAATACACCCTATATTTAAAACACTAAACTTACCCCATTAAAACA

1260113

TACTATAATACACCCTATATTTAAAACACTAAACTTACCCCATTAAAACG

176737319

diploid

Homo sapiens

NCBI:RefSeq

36.1

BOT

TACTGTAATGCACCCTGTATTTAAGGCACTGGGCTTGCCCCATTAAAGCG

CAGATAACTCAATACTGTAATGCACCCTGTATTTAAGGCACTGGGCTTGCCCCATTAAAG[CG]CCATAAATTTGAAGGCCAATGATCGGTTTTCATGTAACGGGTGGTACTTCATACTGAAGT

Grn

176737051

GeneID:3232

HOXD3

HOX4; HOX1D; HOX4A; Hox-4.1; MGC10470;

NM_006898.4

GI:23510372

homeobox protein Hox-D3; Hox-4.1; mouse; homolog of; homeo box D3; go_component: nucleus; go_function: transcription factor activity; go_process: morphogenesis; go_process: regulation of transcription; DNA-dependent

homeobox D3

268

FALSE

NM_006898.4

3232

cg00006414

BOT

6980731

CTCAAAAACCAAACAAAACAAAACCCCAATACTAATCATTAATAAAATCA

4280093

CTCGAAAACCGAACAAAACAAAACCCCAATACTAATCGTTAATAAAATCG

148453770

diploid

Homo sapiens

NCBI:RefSeq

36.1

BOT

CTCGGAAACCGAGCAGGGCAAAACCCCAGTGCTGATCGTTAGTGGGATCG

GAACCGGCCCAGCTCGGAAACCGAGCAGGGCAAAACCCCAGTGCTGATCGTTAGTGGGAT[CG]CGCCTGTGAATAGCCACTGCCCTCCAGCCTGGGCAACAGCCAGACCCCGTCTGTTTAATA

Grn

148454441

GeneID:57541

ZNF398

P51; P71; ZER6; KIAA1339;

NM_020781.2

GI:25777702

isoform b is encoded by transcript variant 2; zinc finger DNA binding protein ZER6; zinc finger-estrogen receptor interaction; clone 6; zinc finger DNA binding protein p52/p71; go_component: nucleus; go_function: DNA binding; go_function: zinc ion binding; go_function: metal ion binding; go_function: transcriptional activator activity; go_process: transcription; go_process: regulation of transcription; DNA-dependent

zinc finger 398 isoform b

671

TRUE

7:148453584-148455804

NC_000007.12

148453584

148455804

NM_020781.2

57541

cg00007981

TOP

5260689

CCAAATTCAAAAAACTACAACTAAAACTAACTATAAACAAAATAATCACA

6860356

CCAAATTCAAAAAACTACGACTAAAACTAACTATAAACAAAATAATCACG

93502242

diploid

Homo sapiens

NCBI:RefSeq

36.1

BOT

CCAAGTTCAAGGGGCTGCGACTGGAGCTGGCTGTGGACAAGATGGTCACG

AGCCCACGGAGCCCAAGTTCAAGGGGCTGCGACTGGAGCTGGCTGTGGACAAGATGGTCA[CG]TGCATTGCGGTGGGGCTGCCCCTGCTGCTCATCTCGCTGGCCTTCGCGCAGGAGATCTCG

Red

93501742

GeneID:24145

PANX1

MRS1; UNQ2529; MGC21309;

NM_015368.3

GI:39995063

innexin; go_component: membrane; go_component: gap junction; go_component: integral to membrane

pannexin 1

500

TRUE

11:93501124-93502564

NC_000011.8

93501124

93502564

NM_015368.3

24145

cg00008493

TOP

7200647

CTATCTACCACAATAAATTAAAACCCAACCATCATAATAAACAAAAAACA

2900438

CTATCTACCGCGATAAATTAAAACCCAACCATCATAATAAACGAAAAACG

92883530

diploid

Homo sapiens

NCBI:RefSeq

36.1

BOT

CTGTCTGCCGCGGTGAGTTGAGGCCCAGCCATCATGGTGGGCGGGAAGCG

CGCCAGCGGCCCCTGTCTGCCGCGGTGAGTTGAGGCCCAGCCATCATGGTGGGCGGGAAG[CG]CGTGGCCCTGGCGGGGCGCCCCGACGGGTGGGGAGAAGGGAGGACACGGCGTGCAGGCCT

Grn

92883290

GeneID:341947

COX8C

COX8-3; MGC119774; MGC119775;

NM_182971.1

GI:33667031

cytochrome c oxidase subunit VIII isoform 3; go_component: mitochondrion; go_component: integral to membrane; go_component: organelle inner membrane; go_function: oxidoreductase activity; go_function: cytochrome-c oxidase activity; go_process: electron transport

cytochrome c oxidase subunit 8C

240

TRUE

14:92883203-92883973

NC_000014.7

92883203

92883973

NM_182971.1

341947

cg00008713

TOP

6860184

CAAAACAATACAAAATTCTACACAAACCAAAAATAAAACCTATCTCAACA

3780392

CAAAACAATACGAAATTCTACACGAACCGAAAATAAAACCTATCTCAACG

11970953

diploid

Homo sapiens

NCBI:RefSeq

36.1

BOT

CAGAACAGTACGGAGTTCTGCACGAGCCGGGGGTGGGGCCTGTCTCAGCG

GCGCGCTTGACCCAGAACAGTACGGAGTTCTGCACGAGCCGGGGGTGGGGCCTGTCTCAG[CG]CGCGGCGGTGGGGCGGGGCTTGGACACGGGCCCGGCTCAACTTGAGGGAGGCGGGGCTCG

Grn

11971455

GeneID:3613

IMPA2

NM_014214.1

GI:7657235

inosine monophosphatase 2; go_function: hydrolase activity; go_function: magnesium ion binding; go_function: inositol-1(or 4)-monophosphatase activity; go_process: signal transduction; go_process: phosphate metabolism

inositol(myo)-1(or 4)-monophosphatase 2

502

TRUE

18:11970322-11972436

NC_000018.8

11970322

11972436

NM_014214.1

3613

cg00009407

BOT

4230376

TAACCAAATTCTACTTACAATTATTTTTCTTTTTCCTATTCTCAAACACA

6380376

TAACCGAATTCTACTTACGATTATTTTTCTTTTTCCTATTCTCAAACGCG

88360674

diploid

Homo sapiens

NCBI:RefSeq

36.1

TOP

CGCGCCTGAGAACAGGAAAAAGAAAAACAACCGCAAGCAGAACTCGGCTA

GCGTCCGACTCTGCCCGGCAACCCGCGACGGCTGGGGCCTTGTCCGAGAGGTGCCCGCAG[CG]CGCCTGAGAACAGGAAAAAGAAAAACAACCGCAAGCAGAACTCGGCTACAGGGCTTGCCT

Grn

88360731

GeneID:123016

TTC8

BBS8;

NM_198309.2

GI:53759117

isoform B is encoded by transcript variant 2; Bardet-Biedl syndrome type 8; go_function: binding; go_process: visual perception; go_process: sensory perception

tetratricopeptide repeat domain 8 isoform B

TRUE

14:88360520-88361283

NC_000014.7

88360520

88361283

NM_198309.2

123016

cg00010193

BOT

4780008

AAATCAAAACAAACCTAAACACTATTACAACCTAACCAAATATACACACA

1580192

AAATCAAAACGAACCTAAACACTATTACAACCTAACCAAATATACACACG

1135216

diploid

Homo sapiens

NCBI:RefSeq

36.1

BOT

AAGTCAGGGCGAGCCTGGGCACTGTTGCAGCCTGGCCAGGTGTGCACACG

GATCTCAGAGTAAAGTCAGGGCGAGCCTGGGCACTGTTGCAGCCTGGCCAGGTGTGCACA[CG]CTCAGGGCAGTGCTAATACACCAGCCCCCTGCTGCCTCAGCACCCTCCAGACTTTAAGCA

Grn

1135160

GeneID:401114

FLJ35816

NM_207489.1

GI:46409601

hypothetical protein LOC401114

FALSE

NM_207489.1

401114

cg00011459

TOP

3120296

AAAAATAATCTACTATCTCCCTTTCAAACTACCCTTCTCCAAACTATACA

7320368

AAAAATAATCTACTATCTCCCTTTCAAACTACCCTTCTCCGAACTATACG

8797926

diploid

Homo sapiens

NCBI:RefSeq

36.1

TOP

CGCACAGCTCGGAGAAGGGCAGCCTGAAAGGGAGACAGTAGACCATTTCT

CCACTGCAGCACCACAGCCCATGGAGAGGCCTTTCCCACACAGCTTTTCCCCGAAACCTA[CG]CACAGCTCGGAGAAGGGCAGCCTGAAAGGGAGACAGTAGACCATTTCTCTCATGGAACTC

Red

8799193

GeneID:5373

PMM2

CDG1; CDGS; CDG1a;

NM_000303.1

GI:4557838

phosphomannomutase activity is deficient in patients with the carbohydrate-deficient glycoprotein syndrome type I (CDG1); go_component: cytoplasm; go_function: isomerase activity; go_function: phosphomannomutase activity; go_function: phosphomannomutase activity; go_process: metabolism; go_process: mannose biosynthesis; go_process: GDP-mannose biosynthesis; go_process: protein amino acid N-linked glycosylation

phosphomannomutase 2

1267

FALSE

NM_000303.1

5373

cg00012199

BOT

6200228

AAAACTAAAACAATAAAACACACACAATTCTAACTACACAACTATAAACA

6200154

AAAACTAAAACGATAAAACGCACACAATTCTAACTACGCAACTATAAACG

20220864

diploid

Homo sapiens

NCBI:RefSeq

36.1

BOT

GGGGCTGAGGCGGTGGGACGCACACAATTCTGACTGCGCAACTGTGAACG

GTCGGAGAACTGGGGGCTGAGGCGGTGGGACGCACACAATTCTGACTGCGCAACTGTGAA[CG]CCGGAGAGGGCGGGCCTCCAGGCTTAGGCCCGGGCTCCCTGATGTCCTCACTTCCTGCGC

Grn

20222212

GeneID:6038

RNASE4

RNS4; MGC9306;

NM_194430.1

GI:37577169

go_component: cellular component unknown; go_function: hydrolase activity; go_function: nucleic acid binding; go_function: endonuclease activity; go_function: pancreatic ribonuclease activity; go_process: mRNA cleavage

ribonuclease; RNase A family; 4 precursor

1348

TRUE

14:20220472-20221241

NC_000014.7

20220472

20221241

NM_194430.1

6038

cg00012386

BOT

6840377

AATTCAAATTATATTCCTAAACCCCACAATTTACAACTAATACAACCACA

1510390

AATTCGAATTATATTCCTAAACCCCACAATTTACAACTAATACAACCACG

225989135

diploid

Homo sapiens

NCBI:RefSeq

36.1

TOP

CGTGGTTGTACCAGTTGCAAACTGTGGGGTCCAGGAATACAACTCGAACC

GTTTGGAGTGAGGACGGGGCCCAGGGAGATGGCATGGACCGTGCCTTTCATTTCAGGAGA[CG]TGGTTGTACCAGTTGCAAACTGTGGGGTCCAGGAATACAACTCGAACCCCAAAGAGCACA

Red

225989320

GeneID:116841

C1orf142

SVAP1; FLJ12517; IMAGE3451454; DKFZp686M10160;

NM_053052.2

GI:26024192

synonyms: SVAP1; FLJ12517; IMAGE3451454; DKFZp686M10160

hypothetical protein LOC116841

185

TRUE

1:225989127-225990210

NC_000001.9

225989127

225990210

NM_053052.2

116841

cg00012792

BOT

1340541

AAAATAAAACTATACTAAAATCCACCAAAAACTATAACCCTAACACTCCA

990678

AAAATAAAACTATACTAAAATCCACCAAAAACTATAACCCTAACACTCCG

8009492

diploid

Homo sapiens

NCBI:RefSeq

36.1

TOP

CGGAGTGTCAGGGCTATAGTTCCTGGTGGATCCCAGCACAGCCTCATCTC

GCAGCAAGAAGAGGGACTCCCTGGGGACTGCGGGCTCAGCGCACCTCATTATCAAGGGTA[CG]GAGTGTCAGGGCTATAGTTCCTGGTGGATCCCAGCACAGCCTCATCTCCCAGGCGGCGCC

Red

8009596

GeneID:81567

TXNDC5

ERP46; UNQ364; EndoPDI; MGC3178;

NM_030810.2

GI:42794770

isoform 1 is encoded by transcript variant 1; thioredoxin related protein; endothelial protein disulphide isomerase; go_component: endoplasmic reticulum; go_function: isomerase activity; go_function: electron transporter activity; go_process: anti-apoptosis; go_process: electron transport

thioredoxin domain containing 5 isoform 1

104

TRUE

6:8008961-8009913

NC_000006.10

8008961

8009913

NM_030810.2

81567

cg00013618

BOT

1410673

CCCAAAACTATAATATTTAAAAATTCTCTACCCTCAAAAATCCCTAACCA

670594

CCCAAAACTATAATATTTAAAAATTCTCTACCCTCAAAAATCCCTAACCG

20710839

diploid

Homo sapiens

NCBI:RefSeq

36.1

TOP

CGGTCAGGGATCCCTGAGGGCAGAGAATTTCCAAACATCACAGTTTTGGG

TCAGGCTAGAGGCCCGAGATAGTCAGGGAGGCTGTGGTCCCAGACTTTGAGCCAGAGAAG[CG]GTCAGGGATCCCTGAGGGCAGAGAATTTCCAAACATCACAGTTTTGGGAGCACCGTGAGA

Grn

20710659

GeneID:3535

180

FALSE

3535

cg00014085

BOT

1240274

ACCTTATTTAAAAACCTTCTTCCTAACCTCCTTATCAATTACCAAAAACA

1780240

ACCTTATTTAAAAACCTTCTTCCTAACCTCCTTATCAATTACCAAAAACG

85435016

diploid

Homo sapiens

NCBI:RefSeq

36.1

TOP

CGCCCCTGGTAACTGACAAGGAGGCCAGGAAGAAGGTTCTCAAACAAGGT

TGGGACTATTCTCTGGCAGCTCCCCGAATCCTTTCTCCGAAGATGTCAAACGGCCCCCAG[CG]CCCCTGGTAACTGACAAGGAGGCCAGGAAGAAGGTTCTCAAACAAGGTAGCAGGAGGGAC

Grn

85435166

GeneID:54884

RetSat

FLJ20296;

NM_017750.2

GI:31377747

go_component: nuclear outer membrane; go_component: endoplasmic reticulum membrane; go_function: oxidoreductase activity; go_function: all-trans-retinol 13;14-reductase activity; go_process: electron transport; go_process: retinol metabolism

all-trans-13;14-dihydroretinol saturase

150

TRUE

2:85434965-85435723

NC_000002.10

85434965

85435723

NM_017750.2

54884

cg00014837

TOP

2970333

CCTTACATAATTACCATAAAAATCCCATAAAATAAATACACTATCATTCA

2190632

CCTTACGTAATTACCATAAAAATCCCATAAAATAAATACACTATCATTCG

6627518

diploid

Homo sapiens

NCBI:RefSeq

36.1

TOP

CGAATGATAGTGTATCTACCTTATGGGATTCCTATGGCAATTACGTAAGG

CCTCACGACCTGTTTGTTGGGCGAGTTGCTTCCCTAAGCCCCGATTTCTCATCTGTAAAA[CG]AATGATAGTGTATCTACCTTATGGGATTCCTATGGCAATTACGTAAGGTAGTGCATGTAA

Red

6626841

GeneID:84519

ACRBP

SP32; OY-TES-1;

NM_032489.2

GI:17999523

go_component: cellular component unknown; go_function: molecular function unknown; go_process: biological process unknown

proacrosin binding protein sp32 precursor

677

FALSE

NM_032489.2

84519

cg00015770

BOT

50767

AAACATTTTTTAATCACTAAAATCAAATCTCCCAATACTTTAACTTCCCA

4730626

GAACATTTTTTAATCACTAAAATCGAATCTCCCAATACTTTAACTTCCCG

122521457

diploid

Homo sapiens

NCBI:RefSeq

36.1

BOT

GAACATTTTTTGGTCACTGAGATCGAGTCTCCCAGTGCTTTGGCTTCCCG

TATTTGAACCGCGAACATTTTTTGGTCACTGAGATCGAGTCTCCCAGTGCTTTGGCTTCC[CG]CCTCTTTATCGTGGGTTTGATCCCTGAGCTGCTCTCCTTTCCCGAACCTCCCGGGGTGCA

Grn

122521252

GeneID:84109

GPR103

AQ27; SP9155;

NM_198179.1

GI:38016136

QRFP receptor; go_component: integral to membrane; go_function: receptor activity; go_function: neuropeptide Y receptor activity; go_function: rhodopsin-like receptor activity; go_process: signal transduction; go_process: G-protein coupled receptor protein signaling pathway

G protein-coupled receptor 103

205

TRUE

4:122520698-122521834

NC_000004.10

122520698

122521834

NM_198179.1

84109

cg00016968

BOT

5560324

TCTAAATCCCAACTATAAATTCTATTCCCACTCCTAAATCTAACTTAACA

5560008

TCTAAATCCCAACTATAAATTCTATTCCCACTCCTAAATCTAACTTAACG

113051971

diploid

Homo sapiens

NCBI:RefSeq

36.1

TOP

CGCCAAGTCAGACCTAGGAGTGGGAACAGAATTCACAGCTGGGATCCAGA

TCCCACCTCCTCAGCTCCCTTACAGGGAAAGGAGATACGCGTGTAGGTAAATATCCTATG[CG]CCAAGTCAGACCTAGGAGTGGGAACAGAATTCACAGCTGGGATCCAGAAGCATTTCTAGG

Grn

113051243

GeneID:389

RHOC

ARH9; ARHC; RHOH9;

NM_175744.3

GI:34222243

Aplysia RAS-related homolog 9 (oncogene RHO H9); RAS homolog gene family; member C (oncogene RHO H9); Aplysia ras-related homolog 9; go_component: membrane; go_function: GTP binding; go_function: nucleotide binding; go_function: GTPase activity; go_function: signal transducer activity; go_process: small GTPase mediated signal transduction; go_process: positive regulation of I-kappaB kinase/NF-kappaB cascade

ras homolog gene family; member C

728

FALSE

NM_175744.3

389

cg00019495

BOT

6550136

CCAACCTACTTAAATAACTAAACTAACTAACACAAACTACTAATAACACA

6220044

CCAACCTACTTAAATAACTAAACTAACTAACGCAAACTACTAATAACACG

57242282

diploid

Homo sapiens

NCBI:RefSeq

36.1

TOP

CGTGCTATCAGCAGCCTGCGTCAGCCAGCCCAGCTATTTAAGCAGGCTGG

TGCCCACGCTGCAGGTTTTTCAGGTCCTTGCTCGAGTGTGTGCTCATAGGCGTAAATAAA[CG]TGCTATCAGCAGCCTGCGTCAGCCAGCCCAGCTATTTAAGCAGGCTGGCATCAGCAAACA

Red

57242322

GeneID:84525

HOP

OB1; LAGY; Toto; Cameo; NECC1; SMAP31; MGC20820;

NM_032495.4

GI:47717119

lung cancer-associated Y protein; not expressed in choriocarcinoma clone 1; heart odd homeobox 1 protein; go_component: nucleus; go_function: transcription factor activity; go_process: development; go_process: regulation of transcription; DNA-dependent

homeodomain-only protein

FALSE

NM_032495.4

84525

Total number of rows: 27578

Table truncated, full table size 22262 Kbytes.

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Supplementary file	Size	Download	File type/resource
GPL8490_HumanMethylation27_270596_v.1.2.csv.gz	5.7 Mb	(ftp)(http)	CSV