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Status
Public on Mar 11, 2002
Title
[RG_U34B] Affymetrix Rat Genome U34 Array
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Rattus norvegicus
Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site The RG-U34 set includes 3 arrays with a total of 26379 entries and was indexed 29-Jan-2002. The set includes ~7,000 known genes and >17,000 EST clusters. The A array contains probes derived from all full-length or annotated genes as well as thousands of EST clusters. The B and C arrays contain only EST clusters.
Description
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
Web link
http://www.affymetrix.com/support/technical/byproduct.affx?product=rgu34 http://www.affymetrix.com/analysis/index.affx
Submission date
Feb 19, 2002
Last update date
Jun 21, 2012
Organization
Affymetrix, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone
888-362-2447
URL
http://www.affymetrix.com/index.affx
Street address
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Samples (455)
GSM4426 , GSM4427 , GSM4428 , GSM4429 , GSM4430 , GSM4431
GSM4432 ,
GSM4434 ,
GSM4435 ,
GSM4436 ,
GSM4437 ,
GSM4438 ,
GSM4439 ,
GSM4440 ,
GSM4441 ,
GSM4442 ,
GSM4443 ,
GSM4444 ,
GSM4445 ,
GSM4446 ,
GSM4447 ,
GSM4448 ,
GSM4449 ,
GSM4450 ,
GSM4451 ,
GSM4452 ,
GSM4453 ,
GSM4454 ,
GSM4455 ,
GSM4456 ,
GSM4457 ,
GSM4458 ,
GSM4459 ,
GSM4460 ,
GSM4461 ,
GSM4462 ,
GSM4463 ,
GSM4464 ,
GSM4465 ,
GSM4466 ,
GSM4468 ,
GSM4469 ,
GSM4470 ,
GSM4471 ,
GSM4472 ,
GSM4473 ,
GSM4474 ,
GSM4475 ,
GSM4476 ,
GSM4478 ,
GSM4479 ,
GSM4480 ,
GSM4481 ,
GSM4482 ,
GSM4483 ,
GSM4484 ,
GSM4485 ,
GSM4486 ,
GSM4971 ,
GSM4972 ,
GSM4973 ,
GSM4974 ,
GSM4975 ,
GSM4976 ,
GSM4977 ,
GSM4978 ,
GSM4979 ,
GSM4980 ,
GSM4981 ,
GSM4982 ,
GSM4983 ,
GSM4984 ,
GSM4985 ,
GSM4986 ,
GSM4987 ,
GSM4988 ,
GSM4989 ,
GSM4990 ,
GSM4991 ,
GSM4992 ,
GSM4993 ,
GSM4994 ,
GSM4995 ,
GSM4996 ,
GSM4997 ,
GSM4998 ,
GSM4999 ,
GSM5000 ,
GSM5001 ,
GSM5002 ,
GSM5003 ,
GSM5004 ,
GSM5005 ,
GSM5006 ,
GSM5007 ,
GSM5008 ,
GSM5009 ,
GSM5010 ,
GSM5011 ,
GSM5012 ,
GSM5013 ,
GSM5014 ,
GSM5015 ,
GSM6108 ,
GSM6109 ,
GSM6110 ,
GSM6111 ,
GSM6112 ,
GSM6403 ,
GSM6404 ,
GSM6405 ,
GSM6406 ,
GSM6407 ,
GSM6408 ,
GSM6409 ,
GSM6410 ,
GSM6411 ,
GSM6462 ,
GSM6463 ,
GSM6464 ,
GSM6465 ,
GSM6466 ,
GSM6467 ,
GSM6468 ,
GSM6469 ,
GSM6470 ,
GSM6471 ,
GSM6472 ,
GSM6473 ,
GSM6474 ,
GSM6475 ,
GSM6476 ,
GSM6477 ,
GSM6478 ,
GSM6479 ,
GSM6480 ,
GSM6481 ,
GSM6482 ,
GSM6483 ,
GSM6484 ,
GSM6485 ,
GSM6486 ,
GSM6487 ,
GSM6488 ,
GSM6489 ,
GSM6490 ,
GSM6491 ,
GSM6492 ,
GSM6493 ,
GSM6494 ,
GSM6495 ,
GSM6496 ,
GSM6497 ,
GSM6498 ,
GSM6499 ,
GSM6500 ,
GSM6560 ,
GSM6561 ,
GSM6562 ,
GSM6563 ,
GSM6564 ,
GSM7567 ,
GSM7570 ,
GSM7573 ,
GSM7576 ,
GSM7579 ,
GSM7582 ,
GSM7585 ,
GSM7588 ,
GSM7591 ,
GSM7594 ,
GSM7597 ,
GSM7600 ,
GSM30751 ,
GSM30752 ,
GSM30753 ,
GSM30754 ,
GSM30755 ,
GSM30757 ,
GSM30968 ,
GSM30969 ,
GSM30970 ,
GSM30971 ,
GSM30972 ,
GSM30973 ,
GSM30974 ,
GSM30975 ,
GSM30976 ,
GSM30977 ,
GSM30978 ,
GSM30979 ,
GSM31193 ,
GSM31195 ,
GSM31200 ,
GSM31227 ,
GSM31228 ,
GSM31252 ,
GSM31255 ,
GSM31259 ,
GSM31261 ,
GSM31262 ,
GSM31271 ,
GSM31275 ,
GSM31279 ,
GSM31282 ,
GSM31301 ,
GSM31307 ,
GSM31312 ,
GSM31313 ,
GSM31322 ,
GSM31323 ,
GSM31325 ,
GSM31326 ,
GSM31327 ,
GSM31331 ,
GSM31336 ,
GSM31346 ,
GSM31347 ,
GSM31348 ,
GSM31352 ,
GSM31355 ,
GSM31361 ,
GSM31362 ,
GSM31367 ,
GSM31369 ,
GSM31370 ,
GSM31372 ,
GSM31374 ,
GSM31375 ,
GSM31377 ,
GSM31379 ,
GSM31386 ,
GSM31387 ,
GSM31393 ,
GSM31398 ,
GSM31402 ,
GSM31404 ,
GSM31408 ,
GSM31417 ,
GSM31419 ,
GSM31421 ,
GSM31426 ,
GSM31427 ,
GSM31435 ,
GSM31436 ,
GSM31438 ,
GSM31444 ,
GSM31460 ,
GSM31461 ,
GSM31463 ,
GSM31465 ,
GSM31467 ,
GSM31468 ,
GSM31474 ,
GSM31476 ,
GSM31477 ,
GSM31484 ,
GSM31486 ,
GSM31490 ,
GSM31494 ,
GSM31495 ,
GSM31501 ,
GSM31503 ,
GSM31505 ,
GSM31508 ,
GSM31514 ,
GSM31516 ,
GSM31517 ,
GSM31523 ,
GSM31529 ,
GSM31530 ,
GSM31531 ,
GSM31535 ,
GSM31540 ,
GSM31543 ,
GSM31544 ,
GSM31549 ,
GSM31552 ,
GSM31553 ,
GSM31555 ,
GSM31560 ,
GSM31565 ,
GSM31570 ,
GSM31571 ,
GSM31573 ,
GSM31576 ,
GSM31579 ,
GSM31581 ,
GSM31583 ,
GSM31588 ,
GSM31591 ,
GSM31592 ,
GSM31596 ,
GSM31605 ,
GSM31606 ,
GSM31607 ,
GSM31608 ,
GSM31612 ,
GSM31615 ,
GSM31667 ,
GSM31804 ,
GSM35286 ,
GSM35287 ,
GSM35288 ,
GSM35289 ,
GSM41518 ,
GSM41521 ,
GSM41524 ,
GSM41527 ,
GSM41530 ,
GSM41533 ,
GSM41536 ,
GSM41539 ,
GSM41542 ,
GSM41545 ,
GSM41548 ,
GSM41553 ,
GSM41555 ,
GSM41558 ,
GSM41561 ,
GSM41564 ,
GSM41567 ,
GSM41570 ,
GSM41573 ,
GSM41576 ,
GSM41579 ,
GSM41582 ,
GSM41585 ,
GSM41588 ,
GSM41591 ,
GSM41594 ,
GSM41597 ,
GSM41600 ,
GSM41603 ,
GSM41606 ,
GSM41609 ,
GSM41612 ,
GSM41615 ,
GSM41618 ,
GSM41623 ,
GSM41626 ,
GSM41629 ,
GSM41634 ,
GSM41637 ,
GSM41640 ,
GSM41643 ,
GSM41646 ,
GSM41649 ,
GSM41654 ,
GSM41657 ,
GSM41660 ,
GSM41663 ,
GSM41666 ,
GSM41669 ,
GSM41672 ,
GSM41675 ,
GSM41678 ,
GSM41681 ,
GSM41684 ,
GSM41687 ,
GSM41690 ,
GSM41693 ,
GSM41696 ,
GSM41699 ,
GSM41702 ,
GSM41705 ,
GSM41708 ,
GSM41711 ,
GSM41714 ,
GSM41717 ,
GSM41720 ,
GSM41723 ,
GSM41726 ,
GSM41729 ,
GSM41732 ,
GSM41734 ,
GSM41999 ,
GSM42000 ,
GSM44441 ,
GSM44450 ,
GSM44454 ,
GSM44462 ,
GSM44720 ,
GSM48634 ,
GSM48636 ,
GSM48638 ,
GSM63098 ,
GSM63099 ,
GSM63100 ,
GSM63101 ,
GSM63102 ,
GSM63103 ,
GSM63104 ,
GSM63105 ,
GSM63106 ,
GSM63107 ,
GSM63108 ,
GSM63109 ,
GSM74049 ,
GSM74050 ,
GSM74051 ,
GSM74052 ,
GSM74053 ,
GSM258371 ,
GSM258372 ,
GSM258373 ,
GSM258374 ,
GSM258375 ,
GSM258376 ,
GSM258377 ,
GSM258378 ,
GSM258379 ,
GSM258380 ,
GSM258381 ,
GSM258382 ,
GSM258383 ,
GSM258384 ,
GSM258385 ,
GSM258386 ,
GSM258387 ,
GSM258388 ,
GSM258389 ,
GSM258390 ,
GSM258391 ,
GSM258392 ,
GSM258393 ,
GSM258394 ,
GSM258395 ,
GSM258396 ,
GSM258397 ,
GSM258398 ,
GSM258399 ,
GSM258400 ,
GSM258401 ,
GSM258402 ,
GSM258403 ,
GSM258404 ,
GSM258405 ,
GSM258406 ,
GSM258407 ,
GSM258408 ,
GSM258409 ,
GSM258410 ,
GSM258411 ,
GSM258412 ,
GSM258413 ,
GSM258414 ,
GSM258415 ,
GSM258416 ,
GSM258417 ,
GSM258418 ,
GSM258419 ,
GSM258420 ,
GSM258421 ,
GSM258422
Series (10)
GSE353
Effect of age on skeletal muscle
GSE413
Kidneys of Dahl salt sensitive rats
GSE464
CNS Regeneration
GSE1775
Comparison of renal transcript levels in Dahl Salt-sensitive (S) rat with S.R congenic rat containing a BP QTL
GSE1795
Expression Profiling of DA, COP, and F1(COPxDA) rat left ventricles
GSE1983
Transcriptional Profiling of the Metanephric Kidney
GSE2270
Spinal Cord Trauma Supraspinal Tracts
GSE2884
Expression profiling of DRG from L5 spinal nerve ligation model of neuropathic pain in the rat
GSE3290
Expression profiling in perinatal Ductus Arteriosus (DA) and Aorta (Ao).
GSE10238
Complement activation in the peripheral nervous system following the spinal nerve ligation model of neuropathic pain
Data table header descriptions
ID
Affymetrix Probe Set ID
GB_ACC
GenBank Accession Number
SPOT_ID
identifies controls
Species Scientific Name
The genus and species of the organism represented by the probe set.
Annotation Date
The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source
The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID
The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title
Title of Gene represented by the probe set.
Gene Symbol
A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID
Entrez Gene Database UID
RefSeq Transcript ID
References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process
Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component
Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function
Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Data table
ID
GB_ACC
SPOT_ID
Species Scientific Name
Annotation Date
Sequence Type
Sequence Source
Target Description
Representative Public ID
Gene Title
Gene Symbol
ENTREZ_GENE_ID
RefSeq Transcript ID
Gene Ontology Biological Process
Gene Ontology Cellular Component
Gene Ontology Molecular Function
AFFX-BioB-3_at
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
J04423
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioB-3_st
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
J04423
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioB-5_at
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
J04423
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioB-5_st
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
J04423
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioB-M_at
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
J04423
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioB-M_st
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
J04423
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioC-3_at
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
J04423
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioC-3_st
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
J04423
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioC-5_at
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
J04423
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioC-5_st
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
J04423
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioDn-3_at
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
J04423
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioDn-3_st
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
J04423
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioDn-5_at
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
J04423
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioDn-5_st
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
J04423
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-CreX-3_at
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
X03453
0006310 // DNA recombination // inferred from electronic annotation /// 0015074 // DNA integration // inferred from electronic annotation
0003677 // DNA binding // inferred from electronic annotation
AFFX-CreX-3_st
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
X03453
0006310 // DNA recombination // inferred from electronic annotation /// 0015074 // DNA integration // inferred from electronic annotation
0003677 // DNA binding // inferred from electronic annotation
AFFX-CreX-5_at
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
X03453
0006310 // DNA recombination // inferred from electronic annotation /// 0015074 // DNA integration // inferred from electronic annotation
0003677 // DNA binding // inferred from electronic annotation
AFFX-CreX-5_st
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively)
X03453
0006310 // DNA recombination // inferred from electronic annotation /// 0015074 // DNA integration // inferred from electronic annotation
0003677 // DNA binding // inferred from electronic annotation
AFFX-DapX-3_at
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
L38424
0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation /// 0019242 // methylglyoxal biosynthetic process // inferred from electronic annotation /// 0019877 // diaminopimelate biosynthetic process // inferred from electronic annotation /// 0042245 // RNA repair // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 0004810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 0008929 // methylglyoxal synthase activity // inferred from electronic annotation /// 0016437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
AFFX-DapX-5_at
--Control
Rattus norvegicus
Jun 9, 2011
Control sequence
GenBank
L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively)
L38424
0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation /// 0019242 // methylglyoxal biosynthetic process // inferred from electronic annotation /// 0019877 // diaminopimelate biosynthetic process // inferred from electronic annotation /// 0042245 // RNA repair // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 0004810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 0008929 // methylglyoxal synthase activity // inferred from electronic annotation /// 0016437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
Total number of rows: 8791 Table truncated, full table size 6606 Kbytes .
Supplementary data files not provided