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Status
Public on Jun 18, 2009
Title
Agilent-021529 Human CGH Whole Genome Microarray 1x1M (G4447A) (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4447A
Description
Submission date
Jun 18, 2009
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (652)
GSM590105 , GSM590106 , GSM590107 , GSM590108 , GSM602278 , GSM602279
GSM602280 ,
GSM602281 ,
GSM602282 ,
GSM602283 ,
GSM602284 ,
GSM602285 ,
GSM602286 ,
GSM602287 ,
GSM602288 ,
GSM696363 ,
GSM696364 ,
GSM696365 ,
GSM696366 ,
GSM696367 ,
GSM696368 ,
GSM696369 ,
GSM696370 ,
GSM696371 ,
GSM696372 ,
GSM696373 ,
GSM696374 ,
GSM696375 ,
GSM696376 ,
GSM696377 ,
GSM696378 ,
GSM696379 ,
GSM696380 ,
GSM696381 ,
GSM696382 ,
GSM696383 ,
GSM696384 ,
GSM696385 ,
GSM696386 ,
GSM696387 ,
GSM696388 ,
GSM696389 ,
GSM696390 ,
GSM696391 ,
GSM696392 ,
GSM696393 ,
GSM696394 ,
GSM696395 ,
GSM696396 ,
GSM696397 ,
GSM696398 ,
GSM717411 ,
GSM717413 ,
GSM717415 ,
GSM717417 ,
GSM736967 ,
GSM736968 ,
GSM736969 ,
GSM736970 ,
GSM747958 ,
GSM747959 ,
GSM747960 ,
GSM747961 ,
GSM747962 ,
GSM747963 ,
GSM747964 ,
GSM747965 ,
GSM747966 ,
GSM747967 ,
GSM747968 ,
GSM747969 ,
GSM747970 ,
GSM747971 ,
GSM747972 ,
GSM747973 ,
GSM747974 ,
GSM747975 ,
GSM747976 ,
GSM747977 ,
GSM747978 ,
GSM747979 ,
GSM747980 ,
GSM747981 ,
GSM747982 ,
GSM747983 ,
GSM747984 ,
GSM747985 ,
GSM747986 ,
GSM747987 ,
GSM747988 ,
GSM747989 ,
GSM747990 ,
GSM747991 ,
GSM747992 ,
GSM747993 ,
GSM747994 ,
GSM747995 ,
GSM747996 ,
GSM747997 ,
GSM747998 ,
GSM747999 ,
GSM748000 ,
GSM748001 ,
GSM748002 ,
GSM748003 ,
GSM748004 ,
GSM748005 ,
GSM748006 ,
GSM748007 ,
GSM748008 ,
GSM748009 ,
GSM748010 ,
GSM748011 ,
GSM840038 ,
GSM840039 ,
GSM840040 ,
GSM840041 ,
GSM840042 ,
GSM840043 ,
GSM840044 ,
GSM840045 ,
GSM840046 ,
GSM840047 ,
GSM840048 ,
GSM840049 ,
GSM840050 ,
GSM840051 ,
GSM840052 ,
GSM840053 ,
GSM840054 ,
GSM840055 ,
GSM840056 ,
GSM840057 ,
GSM840058 ,
GSM840059 ,
GSM840060 ,
GSM840061 ,
GSM840062 ,
GSM840063 ,
GSM840064 ,
GSM840065 ,
GSM840066 ,
GSM840067 ,
GSM840068 ,
GSM1053342 ,
GSM1053343 ,
GSM1053344 ,
GSM1053345 ,
GSM1053346 ,
GSM1053347 ,
GSM1053348 ,
GSM1053349 ,
GSM1053350 ,
GSM1053351 ,
GSM1053352 ,
GSM1053353 ,
GSM1053354 ,
GSM1053355 ,
GSM1053356 ,
GSM1053357 ,
GSM1053358 ,
GSM1053359 ,
GSM1053360 ,
GSM1053361 ,
GSM1053362 ,
GSM1053363 ,
GSM1053364 ,
GSM1053365 ,
GSM1053366 ,
GSM1053367 ,
GSM1053368 ,
GSM1105235 ,
GSM1105236 ,
GSM1105237 ,
GSM1105238 ,
GSM1105239 ,
GSM1105240 ,
GSM1105241 ,
GSM1105242 ,
GSM1105243 ,
GSM1327565 ,
GSM1327566 ,
GSM1327567 ,
GSM1327568 ,
GSM1327569 ,
GSM1327570 ,
GSM1327571 ,
GSM1327572 ,
GSM1327573 ,
GSM1327574 ,
GSM1327575 ,
GSM1327576 ,
GSM1327577 ,
GSM1327578 ,
GSM1327579 ,
GSM1327580 ,
GSM1327581 ,
GSM1327582 ,
GSM1327583 ,
GSM1327584 ,
GSM1327585 ,
GSM1327586 ,
GSM1327587 ,
GSM1327588 ,
GSM1327589 ,
GSM1327590 ,
GSM1327591 ,
GSM1327592 ,
GSM1327593 ,
GSM1327594 ,
GSM1327595 ,
GSM1327596 ,
GSM1327597 ,
GSM1327598 ,
GSM1327599 ,
GSM1327600 ,
GSM1327601 ,
GSM1327602 ,
GSM1327603 ,
GSM1327604 ,
GSM1327605 ,
GSM1327606 ,
GSM1327607 ,
GSM1327608 ,
GSM1327609 ,
GSM1327610 ,
GSM1327611 ,
GSM1327612 ,
GSM1327613 ,
GSM1327614 ,
GSM1327615 ,
GSM1327616 ,
GSM1327617 ,
GSM1327618 ,
GSM1327619 ,
GSM1327620 ,
GSM1327621 ,
GSM1327622 ,
GSM1327623 ,
GSM1327624 ,
GSM1327625 ,
GSM1327626 ,
GSM1327627 ,
GSM1327628 ,
GSM1327629 ,
GSM1327630 ,
GSM1327631 ,
GSM1327632 ,
GSM1327633 ,
GSM1327634 ,
GSM1330551 ,
GSM1330552 ,
GSM1330553 ,
GSM1330554 ,
GSM1330555 ,
GSM1330556 ,
GSM1330557 ,
GSM1330558 ,
GSM1330559 ,
GSM1330560 ,
GSM1463860 ,
GSM1463861 ,
GSM1564357 ,
GSM1564358 ,
GSM1564359 ,
GSM1564360 ,
GSM1564361 ,
GSM1564362 ,
GSM1564363 ,
GSM1564364 ,
GSM1564365 ,
GSM1564366 ,
GSM1564367 ,
GSM1564368 ,
GSM1564369 ,
GSM1564370 ,
GSM1564371 ,
GSM1564372 ,
GSM1564373 ,
GSM1564374 ,
GSM1564375 ,
GSM1564376 ,
GSM1564377 ,
GSM1564378 ,
GSM1564379 ,
GSM1564380 ,
GSM1564381 ,
GSM1564382 ,
GSM1564383 ,
GSM1564384 ,
GSM1564385 ,
GSM1564386 ,
GSM1564387 ,
GSM1564388 ,
GSM1564389 ,
GSM1564390 ,
GSM1564391 ,
GSM1564392 ,
GSM1564393 ,
GSM1564394 ,
GSM1586551 ,
GSM1586552 ,
GSM1586553 ,
GSM1586554 ,
GSM1586555 ,
GSM1586556 ,
GSM1586557 ,
GSM1586558 ,
GSM1586559 ,
GSM1586560 ,
GSM1586561 ,
GSM1586562 ,
GSM1586563 ,
GSM1676570 ,
GSM1676571 ,
GSM1676572 ,
GSM1676573 ,
GSM1676575 ,
GSM1676576 ,
GSM1676577 ,
GSM1676578 ,
GSM1676579 ,
GSM1676582 ,
GSM2175112 ,
GSM2175113 ,
GSM2175114 ,
GSM2175115 ,
GSM2175116 ,
GSM2175117 ,
GSM2545779 ,
GSM2545780 ,
GSM2905816 ,
GSM2905817 ,
GSM4095034 ,
GSM4095036 ,
GSM4095038 ,
GSM4232130 ,
GSM4232131 ,
GSM4232132 ,
GSM4232133 ,
GSM4232134 ,
GSM4232135 ,
GSM4232136 ,
GSM4232137 ,
GSM4232138 ,
GSM4232139 ,
GSM4232140 ,
GSM4232141 ,
GSM4232142 ,
GSM4232143 ,
GSM4232144 ,
GSM4232145 ,
GSM4232146 ,
GSM4232147 ,
GSM4232148 ,
GSM4232149 ,
GSM4232150 ,
GSM4232151 ,
GSM4232152 ,
GSM4232153 ,
GSM4232154 ,
GSM4232155 ,
GSM4232156 ,
GSM4232157 ,
GSM4232158 ,
GSM4232159 ,
GSM4232160 ,
GSM4232161 ,
GSM4232162 ,
GSM4232163 ,
GSM4232164 ,
GSM4232165 ,
GSM4232166 ,
GSM4232167 ,
GSM4232168 ,
GSM4232169 ,
GSM4232170 ,
GSM4232171 ,
GSM4232172 ,
GSM4232173 ,
GSM4232174 ,
GSM4232175 ,
GSM4232176 ,
GSM4232177 ,
GSM4232178 ,
GSM4232179 ,
GSM4232180 ,
GSM4232181 ,
GSM4232182 ,
GSM4232183 ,
GSM4232184 ,
GSM4232185 ,
GSM4232186 ,
GSM4232187 ,
GSM4232188 ,
GSM4232189 ,
GSM4232190 ,
GSM4232191 ,
GSM4232192 ,
GSM4232193 ,
GSM4232194 ,
GSM4232195 ,
GSM4232196 ,
GSM4232197 ,
GSM4232198 ,
GSM4232199 ,
GSM4232200 ,
GSM5365343 ,
GSM5365344 ,
GSM5365345 ,
GSM5365346 ,
GSM5365347 ,
GSM5365348 ,
GSM6511821 ,
GSM6511822 ,
GSM6511823 ,
GSM6511824 ,
GSM6511825 ,
GSM6511826 ,
GSM6511827 ,
GSM6511828 ,
GSM6511829 ,
GSM6511830 ,
GSM6511831 ,
GSM6511832 ,
GSM6511833 ,
GSM6511834 ,
GSM6511835 ,
GSM6511836 ,
GSM6511837 ,
GSM6511838 ,
GSM6511839 ,
GSM6511840 ,
GSM6511841 ,
GSM6511842 ,
GSM6511843 ,
GSM6511844 ,
GSM6511845 ,
GSM6511846 ,
GSM6511847 ,
GSM6511848 ,
GSM6511849 ,
GSM6511850 ,
GSM6511851 ,
GSM6511852 ,
GSM6511853 ,
GSM6511854 ,
GSM6511855 ,
GSM6511856 ,
GSM6511857 ,
GSM6511858 ,
GSM6511859 ,
GSM6511860 ,
GSM6511861 ,
GSM6511862 ,
GSM6511863 ,
GSM6511864 ,
GSM6511865 ,
GSM6511866 ,
GSM6511867 ,
GSM6511868 ,
GSM6511869 ,
GSM6511870 ,
GSM6511871 ,
GSM6511872 ,
GSM6511873 ,
GSM6511874 ,
GSM6511875 ,
GSM6511876 ,
GSM6511877 ,
GSM6511878 ,
GSM6511879 ,
GSM6511880 ,
GSM6511881 ,
GSM6511882 ,
GSM6511883 ,
GSM6511884 ,
GSM6511885 ,
GSM6511886 ,
GSM6511887 ,
GSM6511888 ,
GSM6511889 ,
GSM6511890 ,
GSM6511891 ,
GSM6511892 ,
GSM6511893 ,
GSM6511894 ,
GSM6511895 ,
GSM6511896 ,
GSM6511897 ,
GSM6511898 ,
GSM6511899 ,
GSM6511900 ,
GSM6511901 ,
GSM6511902 ,
GSM6511903 ,
GSM6511904 ,
GSM6511905 ,
GSM6511906 ,
GSM6511907 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (33)
GSE23949 Identification of fusion genes in breast cancer
GSE24446 Genetic abnormalities in GBM brain tumors
GSE24558 GBM brain tumors
GSE25893 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
GSE28112 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (1X1M)
GSE28952 Primary Central Nervous System Lymphomas. A validation study of array-based Comparative Genomic Hybridization in Formalin-Fixed Paraffin-Embedded Tumor Specimens
GSE29711 Molecular Mechanisms of Bortezomib Resistant Adenocarcinoma cells [CGH data]
GSE29713 Molecular Mechanisms of Bortezomib Resistant Adenocarcinoma cells
GSE30217 Longitudinal Genome Wide Analysis of Chronic Lymphocytic Leukemia Reveals Complex Evolution of Clonal Architecture at Disease Progression and at the Time of Relapse
GSE33983 Array comparative genomic hybridization in oral cavity (head and neck) squamous cell carcinoma
GSE42854 CCND2 rearrangements are the most frequent genetic events in Cyclin D1-negative mantle cell lymphoma
GSE42917 CCND2 rearrangements are the most frequent genetic events in Cyclin D1-negative mantle cell lymphoma [Agilent]
GSE45477 Hox-C9 activates the intrinsic pathway of apoptosis and is associated with spontaneous regression in neuroblastoma [aCGH_1M]
GSE45480 Hox-C9 activates the intrinsic pathway of apoptosis and is associated with spontaneous regression in neuroblastoma
GSE54993 a-CGH of Esophageal Cancer (70 cases)
GSE54995 Esophageal Cancer Project
GSE55150 Desmoplastic Melanoma
GSE60015 aCGH: Human SUM149-Luc triple-negative Inflammatory Breast Cancer cell line versus its metabolically adaptable variants MA1 and MA2
GSE60017 Gene expression microarray and CGH array of metabolically adaptable cells derived from SUM149 triple-negative Inflammatory Breast Cancer cell line
GSE64103 Genome profiling of fibrolamellar carcinoma [CGH]
GSE64822 Clinical and molecular characterization of splenic diffuse red pulp lymphomas
GSE65060 Clinical and molecular characterization of splenic diffuse red pulp lymphomas [Agilent]
GSE68597 caArray_carpt-00469: Copy Number and Targeted Mutational Analysis Reveals Novel Somatic Events in Metastatic Prostate Tumors
GSE81753 Chronic p53-independent p21 expression deregulates replication licensing, leading to genomic instability II
GSE81754 Chronic p53-independent p21 expression deregulates replication licensing, leading to genomic instability
GSE96900 Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans [Agilent021529]
GSE96909 Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans
GSE108602 Identification of cell-free DNA in gastric cancer patient
GSE137959 Copy-Number abberation profiles of glioma patient tissue samples and corresponding xenografted tumor samples as well as cell lines derived there-of
GSE142573 Copy number alteration profiling of myxofibrosarcoma and undifferentiated pleomorphic sarcoma
GSE176427 Multiple de novo copy number variant (MdnCNV) driven mirror traits and blended phenotype
GSE212165 CNV analysis of 233 individuals of European ancestry and 6 individuals of non-European ancestry with cleft lip and/or cleft palate
GSE212296 Genome-wide analysis of copy number variation in humans with cleft lip and/or cleft palate identifies COBLL1, RIC1, and ARHGEF38 as clefting genes
Relations Alternative to
GPL8737
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_RANGE NCBI Build 36 (hg18) RefSeq Accession.Version[start..stop]
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
Data table ID COL ROW SPOT_ID CONTROL_TYPE GB_RANGE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION 1
534
1824
HsCGHBrightCorner
pos
2
534
1822
DarkCorner
pos
3
534
1820
DarkCorner
pos
4
534
1818
A_16_P01259762
FALSE
NC_000005.8[75026357..75026416]
NM_152408 C5orf37
chromosome 5 open reading frame 37
ref|NM_152408|ref|NM_001099271
chr5:75026357-75026416
hs|q13.3
Homo sapiens chromosome 5 open reading frame 37 (C5orf37), transcript variant 2, mRNA.
5
534
1816
A_16_P01055747
FALSE
NC_000004.10[114584767..114584826]
chr4:114584767-114584826
hs|q26
6
534
1814
A_16_P16661749
FALSE
NC_000004.10[41332306..41332365]
NM_001112717 LIMCH1
LIM and calponin homology domains 1
ref|NM_001112717|ref|NM_001112718|ref|NM_014988|ref|NM_001112719|ref|NM_001112720
chr4:41332306-41332365
hs|p13
Homo sapiens LIM and calponin homology domains 1 (LIMCH1), transcript variant 2, mRNA.
7
534
1812
A_16_P00580592
FALSE
NC_000002.10[207756239..207756298]
chr2:207756239-207756298
hs|q33.3
8
534
1810
A_16_P38074224
FALSE
NC_000007.12[77727363..77727422]
NM_012301 MAGI2
membrane associated guanylate kinase, WW and PDZ domain containing 2
ref|NM_012301
chr7:77727363-77727422
hs|q21.11
Homo sapiens membrane associated guanylate kinase, WW and PDZ domain containing 2 (MAGI2), mRNA.
9
534
1808
A_16_P00164220
FALSE
NC_000001.9[150018243..150018302]
NM_006862 TDRKH
tudor and KH domain containing
ref|NM_006862|ref|NM_001083963|ref|NM_001083964|ref|NM_001083965
chr1:150018243-150018302
hs|q21.3
Homo sapiens tudor and KH domain containing (TDRKH), transcript variant 3, mRNA.
10
534
1806
A_16_P20731653
FALSE
NC_000017.9[71567235..71567294]
NM_014230 SRP68
signal recognition particle 68kDa
ref|NM_014230
chr17:71567235-71567294
hs|q25.1
Homo sapiens signal recognition particle 68kDa (SRP68), mRNA.
11
534
1804
A_14_P139499
FALSE
NC_000005.8[98611907..98611966]
chr5:98611907-98611966
hs|q21.1
12
534
1802
A_16_P02232488
FALSE
NC_000010.9[24407142..24407199]
NM_001098500 KIAA1217
KIAA1217
ref|NM_001098500
chr10:24407142-24407199
hs|p12.1
Homo sapiens KIAA1217 (KIAA1217), transcript variant 2, mRNA.
13
534
1800
A_16_P38880926
FALSE
NC_000009.10[129461976..129462035]
NM_001032221 STXBP1
syntaxin binding protein 1
ref|NM_001032221|ref|NM_003165
chr9:129461976-129462035
hs|q34.11
Homo sapiens syntaxin binding protein 1 (STXBP1), transcript variant 2, mRNA.
14
534
1798
A_16_P00162943
FALSE
NC_000001.9[149056171..149056230]
NM_001668 ARNT
aryl hydrocarbon receptor nuclear translocator
ref|NM_001668|ref|NM_178426|ref|NM_178427
chr1:149056171-149056230
hs|q21.2
Homo sapiens aryl hydrocarbon receptor nuclear translocator (ARNT), transcript variant 1, mRNA.
15
534
1796
A_16_P36022765
FALSE
NC_000002.10[197652907..197652966]
NM_153697 ANKRD44
ankyrin repeat domain 44
ref|NM_153697
chr2:197652907-197652966
hs|q33.1
Homo sapiens ankyrin repeat domain 44 (ANKRD44), mRNA.
16
534
1794
A_16_P17604015
FALSE
NC_000006.10[80419788..80419847]
NM_031469 SH3BGRL2
SH3 domain binding glutamic acid-rich protein like 2
ref|NM_031469
chr6:80419788-80419847
hs|q14.1
Homo sapiens SH3 domain binding glutamic acid-rich protein like 2 (SH3BGRL2), mRNA.
17
534
1792
A_16_P18004551
FALSE
NC_000007.12[82943672..82943731]
NM_012431 SEMA3E
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
ref|NM_012431
chr7:82943672-82943731
hs|q21.11
Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E (SEMA3E), mRNA.
18
534
1790
A_18_P15156220
FALSE
NC_000005.8[36890472..36890531]
chr5:36890472-36890531
hs|p13.2
19
534
1788
A_16_P39254377
FALSE
NC_000011.8[6154147..6154206]
chr11:6154147-6154206
hs|p15.4
20
534
1786
A_18_P23310454
FALSE
NC_000003.10[171098399..171098458]
chr3:171098399-171098458
hs|q26.2
974016 183916 Kbytes .Supplementary data files not provided
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