GEO help: Mouse over screen elements for information.
Status
Public on Jul 18, 2011
Title
Operon Human 37.6K V4.0.1 Oparray
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Operon (Eurofins MWG Operon)
Manufacture protocol
see manufacturers web site (http://www.eurofinsdna.com/ )
Submission date
Jul 29, 2009
Last update date
Jul 18, 2011
Contact name
Lauro Sumoy
E-mail(s)
lsumoy@igtp.cat Organization name
IGTP
Department
High Content Genomics and Bioinformatics
Street address
Ctra. Can Ruti, Camà de les escoles s/n
City
Badalona
State/province
Barcelona
ZIP/Postal code
08916
Country
Spain
Samples (85)
GSM434695 , GSM434696 , GSM434697 , GSM434698 , GSM434699 , GSM434700
GSM434701 ,
GSM434702 ,
GSM434703 ,
GSM434704 ,
GSM434705 ,
GSM434706 ,
GSM864628 ,
GSM864629 ,
GSM864630 ,
GSM864631 ,
GSM864632 ,
GSM864633 ,
GSM864634 ,
GSM864635 ,
GSM864636 ,
GSM864637 ,
GSM864638 ,
GSM864639 ,
GSM864640 ,
GSM864641 ,
GSM864642 ,
GSM864643 ,
GSM864644 ,
GSM864645 ,
GSM864646 ,
GSM864647 ,
GSM864648 ,
GSM864649 ,
GSM864650 ,
GSM864651 ,
GSM864652 ,
GSM864653 ,
GSM864654 ,
GSM864655 ,
GSM864656 ,
GSM864657 ,
GSM864658 ,
GSM864659 ,
GSM864660 ,
GSM1246128 ,
GSM1246129 ,
GSM1246130 ,
GSM1246131 ,
GSM1246132 ,
GSM1246133 ,
GSM1246134 ,
GSM1246135 ,
GSM1246136 ,
GSM1246137 ,
GSM1246138 ,
GSM1246139 ,
GSM1246140 ,
GSM1246141 ,
GSM1246142 ,
GSM1246143 ,
GSM1246144 ,
GSM1246145 ,
GSM1246146 ,
GSM1246147 ,
GSM1246148 ,
GSM1246149 ,
GSM1431038 ,
GSM1431039 ,
GSM1431040 ,
GSM1431041 ,
GSM1431042 ,
GSM1431043 ,
GSM1431044 ,
GSM1431045 ,
GSM1431046 ,
GSM1431047 ,
GSM1431048 ,
GSM1431049 ,
GSM1431050 ,
GSM1431051 ,
GSM1431052 ,
GSM1431053 ,
GSM1431054 ,
GSM1431055 Series (4)
GSE17403 Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis
GSE35261 Gene expression changes in initiation and progression of oral squamous cell carcinomas revealed by laser microdissection and oligonucleotide microarray analysis
GSE51470 Transcriptomic effects of estradiol treatment on cultured human uterine smooth muscle cells
GSE59231 Transcriptomic effects of combined 17beta-estradiol and progesterone treatment of cultured human uterine smooth muscle cells and of the progesterone inhibitor RU486 (mifepristone)
Data table header descriptions ID feature number
BLOCK feature block
ROW feature row
COLUMN feature column
ID_FEAT feature ID
NAME feature name
GENE SYMBOL gene symbol
OLIGO_NAME probe ID
DESCRIPTION gene description
SEQUENCES probe sequence
ENSEMBL_gene_id ENSEMBL gene ID
ENSEMBL_transcript_id ENSEMBL transcript ID
GB_LIST GenBank accession numbers
ORF CLONE_ID SPOT_ID
Data table ID BLOCK ROW COLUMN ID_FEAT NAME GENE SYMBOL OLIGO_NAME DESCRIPTION SEQUENCES ENSEMBL_gene_id ENSEMBL_transcript_id GB_LIST ORF CLONE_ID SPOT_ID 1
1
1
1
97:_D-01__Dye_Marker
DyeMarker
--DyeMarker
2
1
1
2
01:_D-01__H200000498
ENSG00000109846
CRYAB
H200000498
Alpha crystallin B chain (Alpha(B)-crystallin) (Rosenthal fiber component) (Heat-shock protein beta-5) (HspB5). [Source:Uniprot/SWISSPROT;Acc:P02511]
CCAGTTCTTCGGAGAGCACCTGTTGGAGTCTGATCTTTTCCCGACGTCTACTTCCCTGAGTCCCTTCTA
ENSG00000109846
ENST00000227251
NM_001885 3
1
1
3
96:_D-01__Buffer
Buffer
--Buffer
4
1
1
4
01:_D-13__H200000511
ENSG00000059377
TBXAS1
H200000511
Thromboxane-A synthase (EC 5.3.99.5) (TXA synthase) (TXS). [Source:Uniprot/SWISSPROT;Acc:P24557]
AAATCTGCCCTAGGTCCAAAAAATGGTGTCTATATCAAGATCGTATCCCGCTGACACAGAAGGCTGCCG
ENSG00000059377
ENST00000336425,ENST00000263552
NM_030984 , NM_001061 5
1
1
5
01:_H-01__H200000542
ENSG00000056558
TRAF1
H200000542
TNF receptor associated factor 1 (Epstein-Barr virus-induced protein 6). [Source:Uniprot/SWISSPROT;Acc:Q13077]
AAACTTTCCTCTTCCTGCCTAGAGGCCCCACCTTTGGTGCTTTCCAGAATCCCGTAACACCTGATTAAC
ENSG00000056558
ENST00000317379
NM_005658 6
1
1
6
01:_H-13__H200000557
ENSG00000180644
PRF1
H200000557
Perforin 1 precursor (P1) (Lymphocyte pore forming protein) (PFP) (Cytolysin). [Source:Uniprot/SWISSPROT;Acc:P14222]
CTGGGATCAGGACTCTGGCAGGGACGATGACCTCCTTGGCACCTGTGATCAGGCTCCCAAGTCTGGTTC
ENSG00000180644
ENST00000318971
NM_005041 7
1
1
7
01:_L-01__H200000577
ENSG00000160654
CD3G
H200000577
T-cell surface glycoprotein CD3 gamma chain precursor (T-cell receptor T3 gamma chain). [Source:Uniprot/SWISSPROT;Acc:P09693]
CCATATCTGGCTTTCTCTTTGCTGAAATCGTCAGCATTTTCGTCCTTGCTGTTGGGGTCTACTTCATTG
ENSG00000160654
ENST00000292144
NM_000073 8
1
1
8
01:_L-13__H200000583
ENSG00000163032
VISL1_HUMAN
H200000583
Visinin-like protein 1 (VILIP) (Hippocalcin-like protein 3) (HLP3). [Source:Uniprot/SWISSPROT;Acc:P62760]
TTTTATCATTTTCGTTAAGTGACCGTGCGCAGCGCTGTAACTGCAGGATGGGGAAGCAGAATAGCAAAC
ENSG00000163032
ENST00000295156
NM_003385 9
1
1
9
01:_P-01__H200000613
ENSG00000075213
SEMA3A
H200000613
Semaphorin 3A precursor (Semaphorin III) (Sema III). [Source:Uniprot/SWISSPROT;Acc:Q14563]
TAGAGAATAGTAGCACATTTTTGGAATGCAGTCCGAAGTCGCAGAGAGCGCTGGTCTATTGGCAATTCC
ENSG00000075213
ENST00000265362
NM_006080 10
1
1
10
01:_P-13__H200000623
ENSG00000080608
KIAA0020
H200000623
-
AAAGGTGGCTAATGGCCAATACTCCCATTTGGTTTTACTGGCGGCATTTGATTGTATTGATGATACTAA
ENSG00000080608
ENST00000265774
NM_014878 11
1
1
11
02:_D-01__H200001116
ENSG00000120686
BM02_HUMAN
H200001116
UPF0185 protein BM-002. [Source:Uniprot/SWISSPROT;Acc:P61960]
AAAGCCCATTAATGATTCAGAATCAGTGCTTGACCTCCTGTATTCTGAATGGTGAACTCTGGAAGCAGG
ENSG00000120686
ENST00000239878
NM_016617 12
1
1
12
02:_D-13__H200001129
ENSG00000104219
ZDHHC2
H200001129
Zinc finger DHHC domain containing protein 2 (Zinc finger protein 372) (Reduced expression associated with metastasis protein) (Ream) (Reduced expression in cancer protein) (Rec). [Source:Uniprot/SWISSPROT;Acc:Q9UIJ5]
ATACCTAAAGTGCCAGACCGGAACCTATAGCTACTGCTAGAAGTCTTAAAAAAACCAACAGCAGCACAG
ENSG00000104219
ENST00000262096
NM_016353 13
1
1
13
02:_H-01__H200001162
ENSG00000137727
ARHGAP20
H200001162
Rho GTPase activating protein 20 [Source:RefSeq_peptide;Acc:NP_065860]
TTAGCTATAGGTGCTACCTACCTCTTGGGGACATGGCCCTGTTTGCGCTAACCATTACAATGATCTTTT
ENSG00000137727
ENST00000357139,ENST00000260283
NM_020809 14
1
1
14
02:_H-13__H200001170
ENSG00000088808
PPP1R13B
H200001170
Apoptosis stimulating of p53 protein 1 (Protein phosphatase 1 regulatory subunit 13B). [Source:Uniprot/SWISSPROT;Acc:Q96KQ4]
CAGCACTGTAGCCCATCACCTTGGAGCACTGACTGTACATAGTGTGGTGAAGAAAAGTGAACGCCCTTG
ENSG00000088808
ENST00000202556
NM_015316 15
1
1
15
02:_L-01__H200001204
ENSG00000006740
NM_014859.3
H200001204
-
TGGAGGAGCCAAAGGTGGCCTCCCTGTCCCCAAATATATTGGCTATATGAGAGTAATTTTACCCCTCTA
ENSG00000006740
ENST00000340825,ENST00000262444
NM_014859 16
1
1
16
02:_L-13__H200001217
ENSG00000146966
KIAA1277
H200001217
-
CAAAGATGCTCCCAGAATGGTAGAAACCAGGCTGTGCATAAAAATTAACCTGCCTGGCCGGGCGCAATG
ENSG00000146966
ENST00000275884
NM_015689 17
1
1
17
02:_P-01__H200001249
ENSG00000104888
SLC17A7
H200001249
solute carrier family 17, member 7 [Source:RefSeq_peptide;Acc:NP_064705]
TGTGGTTTTGAGGCACCCACACCCCCCGCTTTCCTTTATCTCCAGGGACTCTCAGGCTAACCTTTGAGA
ENSG00000104888
ENST00000221485
NM_020309 18
1
1
18
02:_P-13__H200001259
ENSG00000145919
FAM44B
H200001259
family with sequence similarity 44, member B [Source:RefSeq_peptide;Acc:NP_612378]
AATGACAGTAAAGATTAGCTGGGAGTAGTCTTTGACAGTGCTTATTTGATACTGTCTCTCAGAGTTTGC
ENSG00000145919
ENST00000285908,ENST00000311086
NM_138369 19
1
1
19
03:_D-01__H200001822
ENSG00000153786
ZDHHC7
H200001822
Zinc finger DHHC domain containing protein 7 (Zinc finger protein 370). [Source:Uniprot/SWISSPROT;Acc:Q9NXF8]
GCAGCGCTCCAGTCGGGAATGGCCAGGATGGCGCCCTCTTGTTGGAGTTTTTGGTTAGCTTTTACGTTT
ENSG00000153786
ENST00000313732
NM_017740 20
1
1
20
03:_D-13__H200001829
ENSG00000198858
C19orf22
H200001829
-
CATCGTTGAGCTTTTCTGGCCCGGTCTGAAGCTCAAGTGAGGAGGGGGAGGCTGGGTTTTTATCACTTT
ENSG00000198858
ENST00000361617,ENST00000361574
NM_138774
37584 9120 Kbytes .Supplementary data files not provided
Less...
More...