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Platform GPL92 Query DataSets for GPL92
Status Public on Mar 11, 2002
Title [HG_U95B] Affymetrix Human Genome U95B Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site

The Human Genome U95 (HG-U95) Set, consisting of five GeneChip arrays, contains almost 63,000 probe sets interrogating approximately 54,000 clusters derived from the UniGene database (Build 95).
Based on this build and associated annotations, the HG-U95Av2 Array represents approximately 10,000 full-length genes, while arrays B through E represent approximately 50,000 EST clusters.

 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www.ncbi.nlm.nih.gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 21, 2012: annotation table updated with netaffx build 32
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=hgu95
http://www.affymetrix.com/analysis/index.affx
Submission date Feb 19, 2002
Last update date Jun 21, 2012
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (513) GSM1339, GSM4232, GSM4237, GSM4396, GSM7626, GSM7629 
Series (15)
GSE465 Expression profiling in the muscular dystrophies
GSE494 Non-union skeletal fractures
GSE762 CCFAlmasan_CaP1

Data table header descriptions
ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
SPOT_ID identifies controls
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID GB_ACC SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
41880_at W74427 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W74427:zd76d07.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-346573 /clone_end=3' /gb=W74427 /gi=1384733 /ug=Hs.58384 /len=409 W74427
41881_at W79058 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W79058:zd76h04.r1 Homo sapiens cDNA, 5' end /clone=IMAGE-346615 /clone_end=5' /gb=W79058 /gi=1390641 /ug=Hs.58387 /len=338 W79058 Chromosome 12 open reading frame 76 C12orf76 400073 NM_207435
41882_at AA738314 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AA738314:nx16g04.s1 Homo sapiens cDNA /clone=IMAGE-1256310 /gb=AA738314 /gi=2769071 /ug=Hs.5840 /len=455 AA738314
41883_at W74646 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W74646:zd77d08.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-346671 /clone_end=3' /gb=W74646 /gi=1384859 /ug=Hs.58405 /len=541 W74646 BCL2-like 13 (apoptosis facilitator) BCL2L13 23786 NM_015367 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // non-traceable author statement /// 0006919 // activation of caspase activity // non-traceable author statement /// 0042981 // regulation of apoptosis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // non-traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0008656 // caspase activator activity // non-traceable author statement
41884_at W74779 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W74779:zd57b05.r1 Homo sapiens cDNA, 5' end /clone=IMAGE-344721 /clone_end=5' /gb=W74779 /gi=1385011 /ug=Hs.58412 /len=415 W74779
41885_at W79475 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W79475:zd78g02.r1 Homo sapiens cDNA, 5' end /clone=IMAGE-346802 /clone_end=5' /gb=W79475 /gi=1390746 /ug=Hs.58423 /len=449 W79475
41886_r_at R85286 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. R85286:yq24c08.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-274574 /clone_end=3' /gb=R85286 /gi=943692 /ug=Hs.58485 /len=272 R85286
41887_at W85908 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W85908:zh52a12.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-415678 /clone_end=3' /gb=W85908 /gi=1398337 /ug=Hs.58532 /len=482 W85908
41888_at W79579 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W79579:zd78d09.r1 Homo sapiens cDNA, 5' end /clone=IMAGE-346769 /clone_end=5' /gb=W79579 /gi=1390850 /ug=Hs.58552 /len=455 W79579
41889_at W79556 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W79556:zd81e01.r1 Homo sapiens cDNA, 5' end /clone=IMAGE-347064 /clone_end=5' /gb=W79556 /gi=1390895 /ug=Hs.58585 /len=343 W79556
41890_at AI051180 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AI051180:oy94b02.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-1673451 /clone_end=3' /gb=AI051180 /gi=3306714 /ug=Hs.58834 /len=441 AI051180
41891_at AI034162 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AI034162:ox12e02.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-1656122 /clone_end=3' /gb=AI034162 /gi=3255115 /ug=Hs.58854 /len=480 AI034162
41892_at AA705103 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AA705103:zj94g12.s1 Homo sapiens cDNA, 3' end /clone=462598 /clone_end=3' /gb=AA705103 /gi=2715021 /ug=Hs.58871 /len=505 AA705103
41893_at W87469 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W87469:zh67c08.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-417134 /clone_end=3' /gb=W87469 /gi=1401524 /ug=Hs.58992 /len=535 W87469
41894_r_at AA701948 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AA701948:zi68b04.s1 Homo sapiens cDNA, 3' end /clone=435919 /clone_end=3' /gb=AA701948 /gi=2705061 /ug=Hs.59324 /len=470 AA701948
41895_at W93764 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W93764:zd96e02.r1 Homo sapiens cDNA, 5' end /clone=IMAGE-357338 /clone_end=5' /gb=W93764 /gi=1422889 /ug=Hs.59486 /len=406 W93764
41896_at W95003 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W95003:zh46b09.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-415097 /clone_end=3' /gb=W95003 /gi=1424172 /ug=Hs.59601 /len=565 W95003
41897_at AA700856 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AA700856:zj36b03.s1 Homo sapiens cDNA, 3' end /clone=452333 /clone_end=3' /gb=AA700856 /gi=2704021 /ug=Hs.59651 /len=537 AA700856
41898_at W95645 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W95645:ze06g12.r1 Homo sapiens cDNA, 5' end /clone=IMAGE-358246 /clone_end=5' /gb=W95645 /gi=1425554 /ug=Hs.59719 /len=441 W95645
41899_at W95442 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W95442:ze07g05.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-358328 /clone_end=3' /gb=W95442 /gi=1425651 /ug=Hs.59732 /len=473 W95442 organic solute carrier partner 1 OSCP1 127700 NM_145047 /// NM_206837 0006810 // transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation

Total number of rows: 12620

Table truncated, full table size 10032 Kbytes.






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