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Status
Public on Nov 12, 2009
Title
NimbleGen Human 080814_HG18_Deluxe_Promoter_HX1 tiling array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
NimbleGen
Manufacture protocol
see the NimbleGen website
Description
Oligo coordinates based on genome build HG18.
Submission date
Oct 19, 2009
Last update date
Nov 12, 2009
Contact name
W. Lee Kraus
E-mail(s)
lee.kraus@utsouthwestern.edu Organization name
UT Southwestern Medical Center
Street address
5323 Harry Hines Blvd.
City
Dallas
State/province
TX
ZIP/Postal code
75390-8511
Country
USA
Samples (22)
GSM463023 , GSM463024 , GSM1489121 , GSM1489122 , GSM1489123 , GSM1489124
GSM1489125 ,
GSM1489126 ,
GSM1489127 ,
GSM1489128 ,
GSM1489129 ,
GSM1489130 ,
GSM1489131 ,
GSM1489132 ,
GSM1489133 ,
GSM1489134 ,
GSM1489135 ,
GSM1489136 ,
GSM1489137 ,
GSM1489138 ,
GSM1489139 ,
GSM1489140 Series (2)
GSE18633 MacroH2A1 ChIP-chip from IMR90 cells
GSE60806 ChIP-chip and MeDIP-chip from glioblastoma BTSCs (brain tumor stem cells) with H3K4me3, H3K27me3, H3K9me3, methylated DNA
Data table header descriptions ID SEQUENCE Sequence of oligo
Chromosome Chromosomal location
RANGE_GB Chromosome GenBank Accession number
SPOT_ID RANGE_START Chromosomal start position of oligo (relative to the RANGE_GB accession)
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo (relative to the RANGE_GB accession)
Data table ID SEQUENCE Chromosome RANGE_GB SPOT_ID RANGE_START LENGTH RANGE_END CHR01FS000004459
CCCTCCCAAGGAAGTAGGTCTGAGCAGCTTGTCCTGGCTGTGTCCATGTC
chr1
NC_000001.9 4459
50
4508
CHR01FS000004599
TGCTGCGGTGGCGGCAGAGGAGGGATGGAGTCTGACACGCGGGCAAAGGC
chr1
NC_000001.9 4599
50
4648
CHR01FS000004689
ATGCCTGGAGGGAAAAGGCTGAGTGAGGGTGGTTGGTGGGAAACCCTGGT
chr1
NC_000001.9 4689
50
4738
CHR01FS000004761
AATACAGGAAGAAAAAGGCAGGACAGAATTACAAGGTGCTGGCCCAGGGC
chr1
NC_000001.9 4761
50
4810
CHR01FS000004841
CTCATGACCAGCTTGTTGAAGAGATCCGACATCAAGTGCCCACCTTGGCT
chr1
NC_000001.9 4841
50
4890
CHR01FS000005021
TCAGAGCCTCAGTCGATCCCTGACCCAGCACCGGGCACTGATGAGACAGC
chr1
NC_000001.9 5021
50
5070
CHR01FS000005056
CACTGATGAGACAGCGGCTGTTTGAGGAGCCACCTCCCAGCCACCTCGGG
chr1
NC_000001.9 5056
50
5105
CHR01FS000005181
CACAGAGCAAGGCAAAAGCAGCGCTGGGTACAAGCTCAAAACCATAGTGC
chr1
NC_000001.9 5181
50
5230
CHR01FS000005256
GGCATCGCATCACACCAGTGTCTGCGTTCACAGCAGGCATCATCAGTAGC
chr1
NC_000001.9 5256
50
5305
CHR01FS000005391
AAGAAGATTCTCCTGTCAGTTTGAGCTGGGTGAGCTTAGAGAGGAAAGCT
chr1
NC_000001.9 5391
50
5440
CHR01FS000005441
CCACTATGGCTCCCAAACCAGGAAGGAGCCATAGCCCAGGCAGGAGGGCT
chr1
NC_000001.9 5441
50
5490
CHR01FS000005626
GCCCTCCGACTGCAAGCTCCAGGGCCCGCTCACCTTGCTCCTGCTCCTTC
chr1
NC_000001.9 5626
50
5675
CHR01FS000005671
CCTTCTGCTGCTGCTTCTCCAGCTTTCGCTCCTTCATGCTGCGCAGCTTG
chr1
NC_000001.9 5671
50
5720
CHR01FS000005751
GACTCTAGCAGAGTGGCCAGCCACCGGAGGGGTCAACCACTTCCCTGGGA
chr1
NC_000001.9 5751
50
5800
CHR01FS000005921
CGAGGAGCCCTGCGCTGGGGAGGCCGGACCTTTGGAGACTGTGTGTGGGG
chr1
NC_000001.9 5921
50
5970
CHR01FS000005981
TGACTTCTGCAACCACCTGAGCGCGGGCATCCTGTGTGCAGATACTCCCT
chr1
NC_000001.9 5981
50
6030
CHR01FS000006071
AGCTAGCCATGCTCTGACAGTCTCAGTTGCACACACGAGCCAGCAGAGGG
chr1
NC_000001.9 6071
50
6120
CHR01FS000006156
GGAGACACAGCAGTGAAGCTGAAATGAAAAATGTGTTGCTGTAGTTTGTTATTAGACC
chr1
NC_000001.9 6156
58
6213
CHR01FS000006271
TCCCTCTGCCCTAGAAGTGAGAAGTCCAGAGCTCTACAGTTTGAAAACCA
chr1
NC_000001.9 6271
50
6320
CHR01FS000006376
TGAGAATTTCTGACCACTTAACAAACCCACAGAAAATCCACCCGAGTGCA
chr1
NC_000001.9 6376
50
6425
2173622 235748 Kbytes .Supplementary file Size Download File type/resource GPL9464_080814_HG18_Deluxe_Promoter_HX1.ndf.gz
139.4 Mb
(ftp) (http) NDF
GPL9464_080814_HG18_Deluxe_Promoter_HX1.pos.gz
17.7 Mb
(ftp) (http) POS
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