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Platform GPL95 Query DataSets for GPL95
Status Public on Mar 11, 2002
Title [HG_U95E] Affymetrix Human Genome U95E Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www.ncbi.nlm.nih.gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html

The Human Genome U95 (HG-U95) Set, consisting of five GeneChip arrays, contains almost 63,000 probe sets interrogating approximately 54,000 clusters derived from the UniGene database (Build 95).
Based on this build and associated annotations, the HG-U95Av2 Array represents approximately 10,000 full-length genes, while arrays B through E represent approximately 50,000 EST clusters.

Keywords = high density oligonucleotide array
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=hgu95
http://www.affymetrix.com/analysis/index.affx
Submission date Feb 19, 2002
Last update date Jun 03, 2009
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (193) GSM1348, GSM4235, GSM4240, GSM4399, GSM4404, GSM11745 
Series (8)
GSE465 Expression profiling in the muscular dystrophies
GSE762 CCFAlmasan_CaP1
GSE803 GeneNote-Gene Normal tissue Expression

Data table header descriptions
ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
SPOT_ID identifies controls
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID GB_ACC SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
67022_at AA532745 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AA532745:nj21f10.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-993163 /clone_end=3' /gb=AA532745 /gi=2278321 /ug=Hs.178610 /len=539 AA532745
67024_at R21542 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. R21542:yh19g02.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-130226 /clone_end=3' /gb=R21542 /gi=776323 /ug=Hs.178666 /len=466 R21542 CAS1 domain containing 1 CASD1 64921 NM_022900 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation
67026_at AI378233 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AI378233:tc65d03.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2069477 /clone_end=3' /gb=AI378233 /gi=4188086 /ug=Hs.178693 /len=418 AI378233 neurofascin homolog (chicken) NFASC 23114 NM_015090 0007155 // cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation
67028_at AI091839 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AI091839:qa58d12.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-1690967 /clone_end=3' /gb=AI091839 /gi=3430898 /ug=Hs.178719 /len=478 AI091839 myeloid/lymphoid or mixed-lineage leukemia 3 MLL3 58508 NM_170606 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007242 // intracellular signaling cascade // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
67030_at R56359 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. R56359:yg93c03.r1 Homo sapiens cDNA, 5' end /clone=IMAGE-41254 /clone_end=5' /gb=R56359 /gi=826465 /ug=Hs.178757 /len=533 R56359 solute carrier family 6, member 17 SLC6A17 388662 NM_001010898 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation
67032_at AI950021 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AI950021:wq15f12.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2471375 /clone_end=3' /gb=AI950021 /gi=5742331 /ug=Hs.178937 /len=499 AI950021
67035_r_at AI341328 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AI341328:qx90g10.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2009826 /clone_end=3' /gb=AI341328 /gi=4078255 /ug=Hs.178953 /len=561 AI341328
67038_at AI025360 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AI025360:ow27b03.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-1648013 /clone_end=3' /gb=AI025360 /gi=3240973 /ug=Hs.179074 /len=375 AI025360 CDGSH iron sulfur domain 1 CISD1 55847 NM_018464 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation
67040_at AI627682 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AI627682:ty81e12.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2285518 /clone_end=3' /gb=AI627682 /gi=4664482 /ug=Hs.179075 /len=470 AI627682 ectonucleotide pyrophosphatase/phosphodiesterase 6 ENPP6 133121 NM_153343 0008152 // metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019695 // choline metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008889 // glycerophosphodiester phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation
67042_at AI571261 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AI571261:tn44a11.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2170460 /clone_end=3' /gb=AI571261 /gi=4534635 /ug=Hs.179080 /len=397 AI571261 solute carrier family 32 (GABA vesicular transporter), member 1 SLC32A1 140679 NM_080552 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0015816 // glycine transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0060077 // inhibitory synapse // inferred from electronic annotation 0015187 // glycine transmembrane transporter activity // inferred from electronic annotation /// 0015495 // gamma-aminobutyric acid:hydrogen symporter activity // inferred from electronic annotation
67044_r_at AI968034 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AI968034:wu12d02.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2516739 /clone_end=3' /gb=AI968034 /gi=5764852 /ug=Hs.179186 /len=561 AI968034
67046_at AI628081 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AI628081:ty84c07.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2285772 /clone_end=3' /gb=AI628081 /gi=4664881 /ug=Hs.179203 /len=482 AI628081 threonine synthase-like 2 (S. cerevisiae) THNSL2 55258 NM_018271 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation
67048_at AI039501 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AI039501:ox41f02.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-1658907 /clone_end=3' /gb=AI039501 /gi=3278695 /ug=Hs.179221 /len=490 AI039501
67049_at N64623 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. N64623:yz86g01.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-289968 /clone_end=3' /gb=N64623 /gi=1212452 /ug=Hs.179240 /len=520 N64623
67050_at AA913079 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AA913079:om94a03.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-1554796 /clone_end=3' /gb=AA913079 /gi=3052471 /ug=Hs.179246 /len=376 AA913079 target of myb1 (chicken)-like 1 TOM1L1 10040 NM_005486 /// XM_001723684 /// XM_001725529 /// XM_001726674 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0043162 // ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005764 // lysosome // traceable author statement /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0030295 // protein kinase activator activity // inferred from electronic annotation /// 0043130 // ubiquitin binding // traceable author statement
67052_at AI344324 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AI344324:tc03f04.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2062783 /clone_end=3' /gb=AI344324 /gi=4081530 /ug=Hs.179294 /len=545 AI344324 KIAA1522 KIAA1522 57648 NM_020888
67055_at AI202200 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AI202200:qs69e11.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-1943372 /clone_end=3' /gb=AI202200 /gi=3754806 /ug=Hs.179299 /len=439 AI202200
67058_at AI204266 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AI204266:qf58a08.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-1754198 /clone_end=3' /gb=AI204266 /gi=3756872 /ug=Hs.179303 /len=428 AI204266
67060_at AA812746 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AA812746:aj43f07.s1 Homo sapiens cDNA, 3' end /clone=1393093 /clone_end=3' /gb=AA812746 /gi=2882810 /ug=Hs.179522 /len=524 AA812746 Solute carrier family 2 (facilitated glucose transporter), member 8, mRNA (cDNA clone MGC:20634 IMAGE:4641145) SLC2A8 29988 NM_014580 0001666 // response to hypoxia // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015758 // glucose transport // inferred from electronic annotation /// 0015758 // glucose transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005351 // sugar:hydrogen symporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // traceable author statement /// 0005536 // glucose binding // inferred from electronic annotation /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation
67062_r_at AI474433 Homo sapiens Mar 11, 2009 Consensus sequence GenBank Cluster Incl. AI474433:th20d08.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2118831 /clone_end=3' /gb=AI474433 /gi=4327478 /ug=Hs.179556 /len=277 AI474433 adaptor-related protein complex 1, sigma 3 subunit AP1S3 130340 NM_001039569 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation

Total number of rows: 12639

Table truncated, full table size 7814 Kbytes.






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