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Platform GPL9523 Query DataSets for GPL9523
Status Public on Jan 11, 2010
Title [Mouse430_2] Affymetrix GeneChip Mouse Genome 430 2.0 Array [Alternative CDF: affy9618alt]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol This is identical to GPL1261 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below.
Submission date Nov 03, 2009
Last update date Jan 11, 2010
Contact name Marni J Falk
Phone 215-590-4564
Organization name CHOP
Department Pediatrics/ Human Genetics
Lab ARC 1002c
Street address 3615 Civic Center Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
Samples (36) GSM467876, GSM467877, GSM467878, GSM467879, GSM2080618, GSM2080619 
Series (2)
GSE18677 Cross-platform expression microarray performance in a mouse model of mitochondrial disease therapy
GSE78895 Rictor/mTORC2 signaling has opposing functions in adult glioma and childhood SHH medulloblastoma
Alternative to GPL1261 (Alternative CDF [official])

Data table header descriptions
ID Remapped probe set defined by AffyProbeMiner
Official_Symbol Number of probes in each probe set
Number_probes Official gene symbol
Entrezgene_ID NCBI Entrez gene ID
SPOT_ID set of genes

Data table
ID Official_Symbol Number_probes Entrezgene_ID SPOT_ID ORF
AFFYCUSTOMHF1 Ntrk1 11 18211 Ntrk1
AFFYCUSTOMHF10 Rbp3 11 19661 Rbp3
AFFYCUSTOMHF100 Opcml 11 330908 Opcml
AFFYCUSTOMHF1000 Drd3 11 13490 Drd3
AFFYCUSTOMHF10000 Top1 11 21969 Top1
AFFYCUSTOMHF10001 Tex16 11 83556 Tex16
AFFYCUSTOMHF10002 Mybpc3 11 17868 Mybpc3
AFFYCUSTOMHF10003 Tnfrsf1b 21 21938 Tnfrsf1b
AFFYCUSTOMHF10004 3110031B13Rik 11 67288 3110031B13Rik
AFFYCUSTOMHF10005 EG234703;EG434434;LOC638133;LOC670252+668946:LOC668946+675230:LOC675230;Rpl10 2 110954;234703;434434;638133;670252 EG234703;EG434434;LOC638133;LOC670252+668946:LOC668946+675230:LOC675230;Rpl10
AFFYCUSTOMHF10006 EG627427;EG666875;EG668771;LOC382931;LOC669985;LOC670155;LOC671972;LOC673015;LOC675010;Phgdh 1 236539;382931;627427;666875;668771;669985;670155;671972;673015;675010 EG627427;EG666875;EG668771;LOC382931;LOC669985;LOC670155;LOC671972;LOC673015;LOC675010;Phgdh
AFFYCUSTOMHF10007 1190002J23Rik 5 68874 1190002J23Rik
AFFYCUSTOMHF10008 Foxj1 11 15223 Foxj1
AFFYCUSTOMHF10009 Tsga13 11 116732 Tsga13
AFFYCUSTOMHF1001 Zfp511 27 69752 Zfp511
AFFYCUSTOMHF10010 Kpna6 21 16650 Kpna6
AFFYCUSTOMHF10011 Rnf17 25 30054 Rnf17
AFFYCUSTOMHF10012 EG622568;Pkig 2 18769;622568 EG622568;Pkig
AFFYCUSTOMHF10013 Gipc2 11 54120 Gipc2
AFFYCUSTOMHF10014 6430604K15Rik;9130019O22Rik;E430018J23Rik;Zfp764 10 101604;233893;269997;78921 6430604K15Rik;9130019O22Rik;E430018J23Rik;Zfp764

Total number of rows: 23424

Table truncated, full table size 1287 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9523_affy9618alt.cdf.gz 4.3 Mb (ftp)(http) CDF

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