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Platform GPL9534 Query DataSets for GPL9534
Status Public on Nov 30, 2009
Title Agilent-020846 Synechococcus elongatus PCC 7942 Oligo Microarray
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Synechococcus elongatus PCC 7942 = FACHB-805
Manufacturer Agilent
Manufacture protocol see manufacturer's website
 
Description Agilent 8x15k
Agilent Array ID 020846
The Platform data table reflects a condensed representation of the array's replicate features.
 
Submission date Nov 05, 2009
Last update date Nov 30, 2009
Contact name Vikram Vijayan
E-mail(s) vvijayan@fas.harvard.edu
Organization name Harvard University
Street address 52 Oxford Street, Room 440
City Cambridge
State/province MA
ZIP/Postal code 02138
Country USA
 
Samples (122) GSM468463, GSM468464, GSM468465, GSM468466, GSM468467, GSM468468 
Series (8)
GSE18902 Oscillations in supercoiling drive circadian gene expression in cyanobacteria
GSE50908 Gene expression timecourse in ΔrpaA strain
GSE50919 Comparison of gene expression in ΔrpaA strain and wild-type strain

Data table header descriptions
ID same as JGI_ID (when available)
ORF Locus tag
JGI_ID Joint Genome Institute ID for predicted ORF
Chromosome Location of the predicted ORF on chromosome or endogenous plasmids (pANL or pANS)
RANGE_GB
RANGE_START
RANGE_START
SEQUENCE Probe 1 sequence without Agilent linker (TATCCTACTATACGTATCACATAGC) appended to make probe 60 nt.
SEQUENCE Probe 2 sequence without Agilent linker (TATCCTACTATACGTATCACATAGC) appended to make probe 60 nt.
SEQUENCE Probe 3 sequence without Agilent linker (TATCCTACTATACGTATCACATAGC) appended to make probe 60 nt.
SEQUENCE Probe 4 sequence without Agilent linker (TATCCTACTATACGTATCACATAGC) appended to make probe 60 nt.
SPOT_ID

Data table
ID ORF JGI_ID Chromosome RANGE_GB RANGE_START RANGE_START SEQUENCE SEQUENCE SEQUENCE SEQUENCE SPOT_ID
637798406 Synpcc7942_0001 637798406 chromosome CP000100 65 1237 GATGAATTTCCTGAGTTGCCTCTGGTTCAGAGCCAAGAAGCTCTACAACTCTCCG CCGATGAATTTCCTGAGTTGCCTCTGGTTCAGAGCCAAGAAGCTCTACAACTCTC CGATGAATTTCCTGAGTTGCCTCTGGTTCAGAGCCAAGAAGCTCTACAACTCTCC ATGAATTTCCTGAGTTGCCTCTGGTTCAGAGCCAAGAAGCTCTACAACTCTCCG
637798407 Synpcc7942_0002 637798407 chromosome CP000100 1262 2134 TAGCGACCTTCTCAATCGACAAGTTCTTGATCGCCAAACCACGGATGAACATG TTAGCGACCTTCTCAATCGACAAGTTCTTGATCGCCAAACCACGGATGAACATG TTAGCGACCTTCTCAATCGACAAGTTCTTGATCGCCAAACCACGGATGAACATGG TTAGCGACCTTCTCAATCGACAAGTTCTTGATCGCCAAACCACGGATGAACAT
637798408 Synpcc7942_0003 637798408 chromosome CP000100 2178 4511 GAAAAATCGCTGATTGAAGCTTGCTTAGAAGCGTTCAAAACAGGTGCTGTTGTTGCTG TCGAAAAATCGCTGATTGAAGCTTGCTTAGAAGCGTTCAAAACAGGTGCTGTTGTTG CTCGAAAAATCGCTGATTGAAGCTTGCTTAGAAGCGTTCAAAACAGGTGCTGTTGTTG CTTCCTCGAAAAATCGCTGATTGAAGCTTGCTTAGAAGCGTTCAAAACAGGTGCTGTTG
637798409 Synpcc7942_0004 637798409 chromosome CP000100 4596 6077 GATCGGTCAGTGAAATCACTGAGCAGATTGGTGTCGATTCTCTGGCTTACCTGAC GATCGGTCAGTGAAATCACTGAGCAGATTGGTGTCGATTCTCTGGCTTACCTGA ATCGGTCAGTGAAATCACTGAGCAGATTGGTGTCGATTCTCTGGCTTACCTGAC GAGAAAGTATTGGTAACTTCTGCACGGCTTGCTTTAACGGTCGCTACCCGATCGCAATTC
637798410 Synpcc7942_0005 637798410 chromosome CP000100 6111 7706 CTCTACTTGTCAGGAGTTTTGGCTTTAGAGCAAGGGCAAATTTTTTCGGCCATGTTGTTG CTACTTGTCAGGAGTTTTGGCTTTAGAGCAAGGGCAAATTTTTTCGGCCATGTTGTTG CTCTACTTGTCAGGAGTTTTGGCTTTAGAGCAAGGGCAAATTTTTTCGGCCATGTTGTT TCTACTTGTCAGGAGTTTTGGCTTTAGAGCAAGGGCAAATTTTTTCGGCCATGTTGTTG
637798411 Synpcc7942_0006 637798411 chromosome CP000100 7779 8192 CATTTTCTGGCTGGGGATTTCCTTTTTATTAGTTGCTTCCAGCTTGTCAGTACTGCTCTG CCATTTTCTGGCTGGGGATTTCCTTTTTATTAGTTGCTTCCAGCTTGTCAGTACTGCTC ATTTTCTGGCTGGGGATTTCCTTTTTATTAGTTGCTTCCAGCTTGTCAGTACTGCTCTG CATTTTCTGGCTGGGGATTTCCTTTTTATTAGTTGCTTCCAGCTTGTCAGTACTGCTCT
637798412 Synpcc7942_0007 637798412 chromosome CP000100 8189 8539 GTTGTTCTTCAGCAATCCTTGGAGCATCTGCCCGAGGTCACTGCTGAAGTTACGGAAAAG TTGTTCTTCAGCAATCCTTGGAGCATCTGCCCGAGGTCACTGCTGAAGTTACGGAAAAG GTTGTTCTTCAGCAATCCTTGGAGCATCTGCCCGAGGTCACTGCTGAAGTTACGGAAAA GTTGTTCTTCAGCAATCCTTGGAGCATCTGCCCGAGGTCACTGCTGAAGTTAC
637798413 Synpcc7942_0008 637798413 chromosome CP000100 8536 8859 CTGATTTACAGCAGGCGGCTGATCAGGTGAGCCAAAGTCGTTGGCAGTATCTAC GATTTACAGCAGGCGGCTGATCAGGTGAGCCAAAGTCGTTGGCAGTATCTAC CAACTGTTGCTGAAATTTCTGGGACTCTTGCAGCCGTGGGTTCCTCTGTTC CAACTGTTGCTGAAATTTCTGGGACTCTTGCAGCCGTGGGTTCCTCTGTTCAC
637798414 Synpcc7942_0009 637798414 chromosome CP000100 8964 10166 CAGACGTCAGCCAGTACAAACGTGGCATTGAAAATAGCTGGTCTAACTTGGTCTACAAC CATCGACATGATCGAAAACCGCTTGGTTGGGATCAAGTCCCGAGAAATCTATGAAACTC CAGACGTCAGCCAGTACAAACGTGGCATTGAAAATAGCTGGTCTAACTTGGTCTACAA AGACGTCAGCCAGTACAAACGTGGCATTGAAAATAGCTGGTCTAACTTGGTCTACAAC
637798415 Synpcc7942_0010 637798415 chromosome CP000100 10252 10878 CTTCGGTTATGTGACTGTTTTTCTGGGGATCTTGCTTGAGAATGCAGGCATTCCG GCTTCGGTTATGTGACTGTTTTTCTGGGGATCTTGCTTGAGAATGCAGGCATTC GTTATGTGACTGTTTTTCTGGGGATCTTGCTTGAGAATGCAGGCATTCCGCTTC CTTCGGTTATGTGACTGTTTTTCTGGGGATCTTGCTTGAGAATGCAGGCATTCCGCTTC
637798416 Synpcc7942_0011 637798416 chromosome CP000100 10998 11474 GACTTACAACAGAACTATTTACAGCTCAAAGCCCGCAATCAACAGCTCGAACATCAACTC CTTACAACAGAACTATTTACAGCTCAAAGCCCGCAATCAACAGCTCGAACATCAACTCC GATCAACTGATTCAACAGTTATCTCACCAGCTCTACACAGAACTTGATCGGCAGGTAGC GGACTTACAACAGAACTATTTACAGCTCAAAGCCCGCAATCAACAGCTCGAACATCAAC
637798417 Synpcc7942_0012 637798417 chromosome CP000100 11641 11964 GTCGTCTCGCCTACTTGATTAATAAACAGCGCGAAGGCATCTACGTCCAAATCAACTAC GTCTCGCCTACTTGATTAATAAACAGCGCGAAGGCATCTACGTCCAAATCAACTACACC CGTCTCGCCTACTTGATTAATAAACAGCGCGAAGGCATCTACGTCCAAATCAACTACAC TCGTCTCGCCTACTTGATTAATAAACAGCGCGAAGGCATCTACGTCCAAATCAACTAC
637798418 Synpcc7942_0013 637798418 chromosome CP000100 12321 13028 ATATGAGGGGAGTGAGATTGATCCTTGGGATATTCGCTGGAGTTTAATGCGTCGAATTTC AAGCTCTCAAGATTACTCGGGGTCTCAGCTACGCTTATCAATAAATATGAGGGGAGTGAG CATGAAAGCTTATCGAAACGAAAGCTCTCAAGATTACTCGGGGTCTCAGCTACGCTTATC AAATATGAGGGGAGTGAGATTGATCCTTGGGATATTCGCTGGAGTTTAATGCGTCGAATT
637798419 Synpcc7942_0014 637798419 chromosome CP000100 13067 13411 CTGTTCGCTGGTATTGGCTTAGTCATTTACGGCATTTATCAAGTCGGCCAGAAAATCTTC CATTATTGTCTCGCCTGTTAGTTTGGTGGAATTTTTAATTGCGATCGCTGCAATGGTTGG CATTTACGGCATTTATCAAGTCGGCCAGAAAATCTTCTTTACAACCCGAAGTTCCAGCTT AAACTGTTCGCTGGTATTGGCTTAGTCATTTACGGCATTTATCAAGTCGGCCAGAAAATC
637798420 Synpcc7942_0015 637798420 chromosome CP000100 13577 14248 TACTTTAGCGAAGAGTTTGCAAGAGATAGTGCAAACGGCACTACAGAATAATGCCCTCTT CTTTAGCGAAGAGTTTGCAAGAGATAGTGCAAACGGCACTACAGAATAATGCCCTCTTTG GTACTTTAGCGAAGAGTTTGCAAGAGATAGTGCAAACGGCACTACAGAATAATGCCCTCT AGTACTTTAGCGAAGAGTTTGCAAGAGATAGTGCAAACGGCACTACAGAATAATGCCCTC
637798421 Synpcc7942_0016 637798421 chromosome CP000100 15020 15604 GTTTCCAGTTACCCAATCTCAGTCGAGGATTTCAGCCACAATATCTGTTTGCGATGTTTG GATTACCTTTGAAGGGGCCGGTAAGACAACAATTCGTAGTTACTATCCACAGCAGTTCAA ACCTTTGAAGGGGCCGGTAAGACAACAATTCGTAGTTACTATCCACAGCAGTTCAATAAT ATTACCTTTGAAGGGGCCGGTAAGACAACAATTCGTAGTTACTATCCACAGCAGTTCAAT
637798422 Synpcc7942_0017 637798422 chromosome CP000100 15630 16193 CTGTCGTAAAACTTTTTCCAGCTAGTAGTGCTGGTGGTCCTGCCTACGTACGATC GATTACGTTGGTTAGAAGTGACTTGGACCAGCGATCGCCCAGCAGAATTACTGTCTCAG TGTCGTAAAACTTTTTCCAGCTAGTAGTGCTGGTGGTCCTGCCTACGTACGATC GATTACGTTGGTTAGAAGTGACTTGGACCAGCGATCGCCCAGCAGAATTACTGTCTC
637798423 Synpcc7942_0018 637798423 chromosome CP000100 16206 18392 GATCTTGATACAGCGACCTTAGATCCCACGGGCTTAGTCAACGCCGATCTATTC TACTTCTATCGCACCGATAGCAAGCAGCCGCTCGAAAGTTTCCTCAGTCAACTAGAAG GTACTTCTATCGCACCGATAGCAAGCAGCCGCTCGAAAGTTTCCTCAGTCAACTAGAAG GTACTTCTATCGCACCGATAGCAAGCAGCCGCTCGAAAGTTTCCTCAGTCAACTAGAA
637798424 Synpcc7942_0019 637798424 chromosome CP000100 18615 20489 CTTTAATGAAGACGGGATCCAGATCCTTAAATTCCACGGTTCCTATCAGCAAGACAACCG ACTTTAATGAAGACGGGATCCAGATCCTTAAATTCCACGGTTCCTATCAGCAAGACAACC TCACTTTAATGAAGACGGGATCCAGATCCTTAAATTCCACGGTTCCTATCAGCAAGACAA CTCACTTTAATGAAGACGGGATCCAGATCCTTAAATTCCACGGTTCCTATCAGCAAGACA
637798425 Synpcc7942_0020 637798425 chromosome CP000100 20490 21092 CTTTACTGCAAAGCCTCAGTCACGAGAGTGTTCATGTAGCTCAAAGCTGTCGGTCTAATC TTTACTGCAAAGCCTCAGTCACGAGAGTGTTCATGTAGCTCAAAGCTGTCGGTCTAATC CTTTACTGCAAAGCCTCAGTCACGAGAGTGTTCATGTAGCTCAAAGCTGTCGGTCTAAT TTTACTGCAAAGCCTCAGTCACGAGAGTGTTCATGTAGCTCAAAGCTGTCGGTCTAATCT

Total number of rows: 2723

Table truncated, full table size 815 Kbytes.




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